mRNA_F-serratus_M_contig880.20187.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig880.20187.1
Unique NamemRNA_F-serratus_M_contig880.20187.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.200e-34
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+EGK  VAL+LE LA E++  PTDTP  CPN+F  AEE L H+S+    + LRCLVVLDNVW+VEVV+AFA+TG H LVTTR+R VI  ++ GV  EVGDM E + LE+L + S
Sbjct:  308 GREGK-DVALLLEHLAVELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKAS 421          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.160e-22
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            GQ G  +   +L+ LAR++A AP+  PH  P++F   E  + H+    K  NLRCLVVLD+VWD ++V  F   G H+LVTTR+  VIP   +GV  EV  +   E LELL+  S
Sbjct:  306 GQVGTGNPMALLQGLARDLAHAPSHQPHTVPHEFVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEALELLKNAS 420          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.660e-21
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+    S+   L+ LARE+  APTD PH  P+ FDS E+ + H++A +   +   LVVLD+VW+ EVV+AF   G+  LVTTR+R+++     G ++E+GDM E E LELL +TS
Sbjct:  311 GRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVG--VPGGLLELGDMAEDEALELLWKTS 423          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.050e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVI-PPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K S+  +L+ LARE+  APTD PH  P+  DS E+   H++A   + N   LVVLD+VW+ EVV AF   G   L+TTR+R+++  P  R   +E+GDM E E LELLR+TS
Sbjct:  119 GRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGR---LELGDMTEEEALELLRKTS 231          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.120e-20
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K S+  +L+ LARE++ APTDTPH  P+  +S E+   H++    +     LVVLD+VW+ EVV A  + G+  LVTTR+R+V+     G ++E+GDM E E LELL +TS
Sbjct:   75 GRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVG--VSGGLLELGDMTEEEALELLLKTS 187          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.890e-20
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            GQ G  +   +L+ LA ++A AP++ P   P++F   E  + H+   ++  NLRCLVVLDNVWD E+V  F  TG   LVTTR+  ++P    G    V  + E E LELL++ S
Sbjct:  265 GQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKAS 379          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-19
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K+S+  +L+ LARE+  A TD PH  P+  D  E+   H++A   +     LVVLD+VW+ EVV AF   G   L+TTR+R+V+  +     +EVGDM E E LELLR++S
Sbjct:  280 GRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--VVPAGRLEVGDMTEEEALELLRKSS 392          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.880e-19
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIP-PMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K+S+  +L+ LA ++  APTD PH  P+  D  E+   H++A   +     LVVLD+VW+ EVV AF   G   L+TTR+R+V+  P  R   +E+GDM E E LELLR+TS
Sbjct:  334 GRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGR---LELGDMTEEEALELLRKTS 446          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.960e-19
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIP-PMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K+S+  +L+ LAR++  APTD P   P   DS E+   H++A   +   + LVVLD+VW+ EVV AF   G   L+TTR+R+V+  P  R   +E+GD+ E E LELLR+TS
Sbjct:  317 GRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGR---LELGDVTEEEALELLRKTS 429          
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.560e-18
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRC-LVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
            G+  K S+  +L+ LARE+ VAPTD PH  P   DS E+   H++A + S      LVVLD+VW+ EVV A    G   L+TTR+ +V+    R   +++GDM E E LELLR+TS
Sbjct:  291 GRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPAR--RLDLGDMTEEEALELLRKTS 404          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FH19_ECTSI1.200e-3459.13NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LL58_ECTSI4.160e-2244.35NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI3.660e-2145.22NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7FUD7_ECTSI5.050e-2146.55NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LJA6_9PHAE2.120e-2044.35NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L982_9PHAE6.890e-2040.87NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE1.470e-1943.48NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI9.880e-1943.97NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI9.960e-1943.97NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI2.560e-1844.83NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig880contigF-serratus_M_contig880:101001..101359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size360
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932567.8833218-CDS-F-serratus_M_contig880:101000..1013571622932567.8833218-CDS-F-serratus_M_contig880:101000..101357Fucus serratus maleCDSF-serratus_M_contig880 101001..101357 +
1690964369.6698039-CDS-F-serratus_M_contig880:101000..1013571690964369.6698039-CDS-F-serratus_M_contig880:101000..101357Fucus serratus maleCDSF-serratus_M_contig880 101001..101357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig880.20187.1prot_F-serratus_M_contig880.20187.1Fucus serratus malepolypeptideF-serratus_M_contig880 101001..101357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig880.20187.1

>prot_F-serratus_M_contig880.20187.1 ID=prot_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=polypeptide|length=119bp
FHFGQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSAT
IKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMV
EVGDMEEMEGLELLRRTSH
back to top

mRNA from alignment at F-serratus_M_contig880:101001..101359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig880.20187.1 ID=mRNA_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=mRNA|length=359bp|location=Sequence derived from alignment at F-serratus_M_contig880:101001..101359+ (Fucus serratus male)
TTCCATTTTGGGCAGGAGGGTAAAGCAAGTGTTGCTCTGATCTTGGAACA GCTTGCGCGTGAAATAGCTGTGGCCCCTACAGACACGCCCCATCTCTGTC CGAATAAGTTTGATAGCGCTGAGGAGACTCTTTGGCACGTTTCCGCGACC ATCAAGTCGAACAACTTGCGGTGCCTAGTAGTGCTGGATAACGTCTGGGA TGTGGAGGTTGTCAGCGCATTCGCGAACACGGGCATCCACGCCCTTGTCA CCACTCGTGAGAGGACCGTGATCCCACCGATGTACCGGGGAGTGATGGTG GAGGTTGGAGATATGGAAGAGATGGAAGGTCTGGAGCTTCTTCGGAGGAC TAGCCATGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig880:101001..101359+

>mRNA_F-serratus_M_contig880.20187.1 ID=mRNA_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig880:101001..101359+ (Fucus serratus male)
TTCCATTTTGGGCAGGAGGGTAAAGCAAGTGTTGCTCTGATCTTGGAACA
GCTTGCGCGTGAAATAGCTGTGGCCCCTACAGACACGCCCCATCTCTGTC
CGAATAAGTTTGATAGCGCTGAGGAGACTCTTTGGCACGTTTCCGCGACC
ATCAAGTCGAACAACTTGCGGTGCCTAGTAGTGCTGGATAACGTCTGGGA
TGTGGAGGTTGTCAGCGCATTCGCGAACACGGGCATCCACGCCCTTGTCA
CCACTCGTGAGAGGACCGTGATCCCACCGATGTACCGGGGAGTGATGGTG
GAGGTTGGAGATATGGAAGAGATGGAAGGTCTGGAGCTTCTTCGGAGGAC
TAGCCATTTCCATTTTGGGCAGGAGGGTAAAGCAAGTGTTGCTCTGATCT
TGGAACAGCTTGCGCGTGAAATAGCTGTGGCCCCTACAGACACGCCCCAT
CTCTGTCCGAATAAGTTTGATAGCGCTGAGGAGACTCTTTGGCACGTTTC
CGCGACCATCAAGTCGAACAACTTGCGGTGCCTAGTAGTGCTGGATAACG
TCTGGGATGTGGAGGTTGTCAGCGCATTCGCGAACACGGGCATCCACGCC
CTTGTCACCACTCGTGAGAGGACCGTGATCCCACCGATGTACCGGGGAGT
GATGGTGGAGGTTGGAGATATGGAAGAGATGGAAGGTCTGGAGCTTCTTC
GGAGGACTAGCCAT
back to top