mRNA_F-serratus_M_contig1270.2019.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1270.2019.1
Unique NamemRNA_F-serratus_M_contig1270.2019.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: D7FS74_ECTSI (Ribonuclease Z n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS74_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 4.220e-126
Identity = 207/292 (70.89%), Postives = 231/292 (79.11%), Query Frame = -2
Query: 1147 AEGEPLRLLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNF--DGEGGRGGRKGAAMLLEGMRSVPVFHCYDAYGLVLQLWKGGAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDD 2016
            AEG PLRLL+DAG GTLGH ERQFG EGA REIRGLDCVWISHKHADH TGLFR+IA HHRAR A R A G    E   P+ VVAP  VL F++ CK FSGE++S++ +  +D  R   WRG SG        G RG R+G + LL GMRSV V HC +AYGLV+QLW+ GAKLVYSGDTRPCDRLVRAG GA LL+HEATFDDSMQQDAVSK HCTTSEA++VGRRMRA E+VLTHFSQRYPRVPVLD ERAQHFCVAFDGMVLN  T+ VLPAAA +LSQVLE K+E+ D
Sbjct:  604 AEGAPLRLLIDAGEGTLGHFERQFGREGALREIRGLDCVWISHKHADHHTGLFRLIAEHHRARQASRPA-GGGPREAAAPLVVVAPSAVLTFVKACKEFSGEDISYQAMRCKDLERAWHWRGGSGTRAGPSPSGRRGSRRGVSALLSGMRSVSVIHCREAYGLVVQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQHFCVAFDGMVLNGNTVGVLPAAANLLSQVLEPKAEDGD 894          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: D7FS73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS73_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 1.040e-105
Identity = 166/242 (68.60%), Postives = 207/242 (85.54%), Query Frame = 3
Query:  246 NPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLKGHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQSTLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYLQ 971
            NPL+R+DPERAR+N+ ITILA TP+ EWKPA++DEY+ SLLK  ++RQ M ERL+ VRSGEEREAL RVD+++TG+LG E RKASRKKVS+IL+AA EG  +LD+ +Q L K DLLDSDLT+YV SLI+ EE KCV+S LL+VL+TVRDRI+ EL   +RPEIRTLA+AL I D  +RKEFLQHAF +LE+LDEFVKFVEEG++++GDDFG ++R+NMPQE+FDKMK IYAEA+A+RR YLQ
Sbjct:   32 NPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 273          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A6H5JNW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW5_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 3.320e-103
Identity = 174/288 (60.42%), Postives = 218/288 (75.69%), Query Frame = 3
Query:  162 RHSRRRKHRVSAATPWSMSSGHGSNEVL------------------NPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLKGHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQSTLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYLQ 971
            R S  R+ R    T  S ++  G   VL                  NPL+R+DPERAR+N+ ITILA TP+ EWKPA++DEY+ SLLK  ++RQ M ERL+ VRSGEEREAL RVD+++TG+LG E RKASRKKVS+IL+AA EG  +LD+ +Q L K DLLDSDLT+YV SLI+ EE KCV+S LL+VL+TVRDRI+ EL   +RPEIRTLA+AL I D  +RKEFL HAF +LE+LDEFVKFVEEG++++GDDFG ++R+NMPQE+FDKMK IYAEA+A+RR YLQ
Sbjct:   97 RRSGHRRPRDPTVTAMSAAADEGDGSVLGPLRPLSPTEDGGDVFNPNPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIKDGAQRKEFLLHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 384          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A835Z8U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U9_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.840e-55
Identity = 119/253 (47.04%), Postives = 162/253 (64.03%), Query Frame = 3
Query:  228 GSNEVLNPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLK--GHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQ----STLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYL 968
            G  ++ + +S  + +R RIN+FI+ L   P + W P +L+ +   LL+    +Y+Q MA R S  R G+ER  L RV+AFL GYL Q+RR+ASR KV  +L AA  G  +LD  +  L+    +DSDL +YVT L+  EE K +     S LL VLR VRDR++ EL T SRPEIR LA AL++    +R ++L+ AFT+LEDL+EF+ FV EGV Y  ++ G+ +RSNMPQEN DKMK I  EA  +R  YL
Sbjct:   82 GGGDIKSVISGGEEDRIRINNFISYLCNLPQSAWSPDVLESHTPDLLRDGSAVYKQTMALRASRARDGDERAKLERVEAFLNGYLQQQRRRASRVKVQEMLGAAAVGPQELDAAMAELSASKGIDSDLVEYVTGLVEAEEMKRMDTDGSSRLLAVLRAVRDRLQAELRTGSRPEIRILAYALRLPTALQRSDYLRSAFTKLEDLEEFLDFVTEGVGYF-ENGGIDVRSNMPQENLDKMKDIQREAERMREFYL 333          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: M1CIC3_SOLTU (Ribonuclease Z n=11 Tax=Solanum TaxID=4107 RepID=M1CIC3_SOLTU)

HSP 1 Score: 200 bits (508), Expect = 5.800e-51
Identity = 115/283 (40.64%), Postives = 162/283 (57.24%), Query Frame = -2
Query: 1183 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAMLLEGM---RSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVL 1995
            +L+D G GTLG ++R+FGV+GA   ++GL C+WISH HADH  GL RI+A  H         + + +P   +P+ VV PQ +  FL+  +    EE+  + +  RDT  + SW      + +   G   R    +   G+    SVPV HC  AYG+VL+             G K+VYSGDTRPC  LV+A  GA LL+HEATF+D M ++A++K+H T  EAV+ G    A  ++LTHFSQRYP++PV D       C+AFD M +N A + +LP+    L
Sbjct:  545 ILLDCGEGTLGQLKRRFGVDGADEAVKGLKCIWISHIHADHHAGLARILALRH--------DLLSGTPH--EPLIVVGPQQLEIFLDRYQML--EELDMQFLDCRDTTES-SWEAFESNDHNDANGSASRLKNMLREAGLMALNSVPVIHCPQAYGIVLKFADRTNVIGKKIPGWKIVYSGDTRPCPELVKASHGATLLIHEATFEDGMLEEAIAKNHSTMGEAVEAGDAAGAYRVILTHFSQRYPKIPVFDETYMHKACIAFDLMSVNLADLPMLPSVVPYL 814          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A1S4CR46_TOBAC (Ribonuclease Z n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CR46_TOBAC)

HSP 1 Score: 199 bits (505), Expect = 1.540e-50
Identity = 120/303 (39.60%), Postives = 164/303 (54.13%), Query Frame = -2
Query: 1132 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAMLLEGM---RSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAK---SEEDDVQEIV 1995
            +L+D G GTLG ++R+FGVEGA   ++GL C+WISH HADH  GL RI+          R  + N +P   +P+ VV PQ +  FL+  +     +M F  +  RDT ++ SW        +   G   R    +   G+    SVPV HC  AYG+VL+             G K+VYSGDTRPC  LV A  GA + +HEATF+D M ++A++K+H T  EAVD G    A  ++LTHFSQRYP++PV D       CVAFD M +N A + +LP     L  +   +    E DDV   +
Sbjct:  542 ILLDCGEGTLGQLKRRFGVEGADEAVKGLRCIWISHIHADHHAGLARILTL--------RRDLLNETPH--EPLIVVGPQQLEIFLDRYQMLEDLDMQF--LDSRDTTKS-SWEAFELNEDNDANGSASRLKNTLRESGLISLNSVPVIHCPQAYGIVLKAADKTNVIGKMIPGWKIVYSGDTRPCPELVEASRGATVFIHEATFEDGMVEEAIAKNHSTMGEAVDAGDAAGAYRVILTHFSQRYPKIPVFDESYMNKACVAFDLMSVNLADLPMLPRVLPYLKLLFRDEIVVHESDDVNSAI 831          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A5P1FTL7_ASPOF (Ribonuclease Z n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FTL7_ASPOF)

HSP 1 Score: 198 bits (504), Expect = 4.390e-50
Identity = 128/334 (38.32%), Postives = 173/334 (51.80%), Query Frame = -2
Query: 1129 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFD----------GEGGR--------GGRKGAAML---------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAA---RVLSQVLEAKSEEDDVQEIVL 1995
            LL+D G GTLG ++R+FGVEGA   ++GL C+WISH HADH TGL RI+A         R  +    P   +P+ V+ P+ +  FL+        +  F           DS+  +S    D           +  R        G     AM                LE + SVPV HC  A+G+VL+  +          G KLVYSGDTRPC  L+ A A A +L+HEATF+DSM+++A++K+H TT EA+ VG   RA  IVLTHFSQRYP+VPV D       C+AFD M +N A + VLP      +VL +   A  E DD+Q++ +
Sbjct:  626 LLLDCGEGTLGQLKRRFGVEGADNAVKGLRCIWISHIHADHHTGLARILAL--------RSQLLKDVPH--EPLLVIGPRSLKRFLDAYARLEDLDALFLDCRHTTEASLDSFFSSSNSEHDKYQSQETTLFAQDSRMESFWKRPGSPVDIAMAEPLLIRLKSILRDAGLEALYSVPVIHCPQAFGVVLKAAERINSVRKTIPGWKLVYSGDTRPCQSLIDASADATVLIHEATFEDSMEEEAIAKNHSTTKEAIGVGSSARAYRIVLTHFSQRYPKVPVFDEAHMDRTCIAFDLMSINAADLPVLPKVLPYLKVLFRNEMAVDESDDIQDVAV 949          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A803QWV9_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QWV9_CANSA)

HSP 1 Score: 187 bits (475), Expect = 1.980e-49
Identity = 128/352 (36.36%), Postives = 180/352 (51.14%), Query Frame = -2
Query: 1129 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEV-------------CKNFSGEEM-SFKGVC--------IRDTMRN-DSWRGASGGNFDGE-----GGRGGR------------------KGAAMLL-----EGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLE---AKSEEDDVQEIVL 1995
            LL+D G GTLG ++R++GV+GA   +RGL C+WISH HADH TGL RI+A  H     E L       E  +PI VV P+ +  +L+              C++ + E + +FK +         I D   + D W+  + G    +       RG R                  K    +L     E + S PV HC  A+G+VL+  +          G K+VYSGDTRPC+  + A   A +L+HEATF++ M ++AV+K+H TT EA++VG    A  I+LTHFSQRYP++PV D     + C+AFD M +N A + VLP     L  +     A  E DDVQE +L
Sbjct:   55 LLLDCGEGTLGQLKRRYGVDGADDAVRGLRCIWISHIHADHHTGLARILALRH-----ELL-----KEEPHEPILVVGPRQLKRYLDAYQRLEDLNMMFLDCQHTTKESLDAFKSIIESSNDLISIGDPKSSKDIWKKPTDGQMAQKIDSTLFARGSRMQSYWQKPGSPIDNITEIKSLKKILGDAGLEALISFPVVHCPQAFGVVLKAAERTNSVGKSIPGWKVVYSGDTRPCEASIEASRDATILIHEATFEEGMVEEAVAKNHSTTEEAIEVGNAAGAYRIILTHFSQRYPKIPVFDETHMHNTCIAFDMMSVNVADLPVLPRVLPYLKMLFRNEMALEESDDVQESML 396          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A1S3ZEB0_TOBAC (Ribonuclease Z n=10 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZEB0_TOBAC)

HSP 1 Score: 196 bits (499), Expect = 2.510e-49
Identity = 121/338 (35.80%), Postives = 169/338 (50.00%), Query Frame = -2
Query: 1126 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSF-----------------------KGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAML----------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDDVQEIVLA 1995
            +L+D G GTLG ++R+FG+EGA   ++GL C+WISH HADH TGL RI+A         R  + N +P   +P+ VV P+ +  FL+  +     +M F                       +  C+    +N S   A G   +    R G    A                  LE + S PV HC  AYG VL+             G K+VYSGDTRPC  LV A  GA +L+HEATF+D M ++A++++H TT EA++VG    A  IVLTHFSQRYP++PV D       C+AFD M +N A + +LP     L  +   +   D+  +I +A
Sbjct:  681 ILLDCGEGTLGQLKRRFGIEGADEAVKGLRCIWISHIHADHHTGLARILAL--------RRDLLNGTPH--EPLIVVGPRQLKRFLDAYQKLEDLDMQFLDCRHTTEVSLKTFESNGDKDVSESACVPSDQKNGSTLFAKGSRMESYWKRPGSPVDAAAAFPLLKTLKEILREAGLEALISFPVIHCPQAYGAVLKAADRTNSTGKKIPGWKIVYSGDTRPCPELVEASCGATVLIHEATFEDGMVEEAIARNHSTTQEAIEVGDSAGAYRIVLTHFSQRYPKIPVFDETHMHKTCIAFDMMSVNLADLPMLPRVLPYLKLLFRDEMIADESDDIDVA 1008          
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: UPI0005C917F2 (zinc phosphodiesterase ELAC protein 2 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C917F2)

HSP 1 Score: 196 bits (498), Expect = 2.760e-49
Identity = 120/332 (36.14%), Postives = 166/332 (50.00%), Query Frame = -2
Query: 1132 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVC-IRDTMRNDSWRGASGGNFDGEGGRGGR---------KGAAML-------------------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDDVQEIV 1995
            LL+D G GTLG ++R++GVEGA   +RGL C+WISH HADH TGL RI+A         R  +    P   +P+ VV P+ +  +L+  +     +M F       D   N   R           G+  +         KG+ M                          LE + SVPV HC  A+G+VL+  K          G KLVYSGDTRPC  L+ A  GA +L+HEATF+D M+ +A+ K+H TT EA+ VG       ++LTHFSQRYP++PV D       C+AFD M +N A + VLP     L  + + +   D++ EI+
Sbjct:  629 LLLDCGEGTLGQLKRRYGVEGADNAVRGLRCIWISHIHADHHTGLARILAL--------RRTLLKGVPH--EPVLVVGPRQLKSYLDAYQRLEDLDMQFLDCRNTTDASLNAPSRATDSNKHHSSPGKDRQQKVDSTLFAKGSRMESYWKKPGSPVDDAVLSLQKMLSEAGLEALISVPVIHCSQAFGVVLKASKRLNSVGKVIPGWKLVYSGDTRPCPALIEASRGATILIHEATFEDGMEDEAIKKNHSTTEEAIGVGNSAGVYRVILTHFSQRYPKIPVFDEAHMHKTCIAFDLMSINMADLPVLPKVLPYLKMLFKNEMTVDELDEIL 950          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS74_ECTSI4.220e-12670.89Ribonuclease Z n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
D7FS73_ECTSI1.040e-10568.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNW5_9PHAE3.320e-10360.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8U9_9STRA2.840e-5547.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M1CIC3_SOLTU5.800e-5140.64Ribonuclease Z n=11 Tax=Solanum TaxID=4107 RepID=M... [more]
A0A1S4CR46_TOBAC1.540e-5039.60Ribonuclease Z n=5 Tax=Nicotiana TaxID=4085 RepID=... [more]
A0A5P1FTL7_ASPOF4.390e-5038.32Ribonuclease Z n=1 Tax=Asparagus officinalis TaxID... [more]
A0A803QWV9_CANSA1.980e-4936.36Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A0A1S3ZEB0_TOBAC2.510e-4935.80Ribonuclease Z n=10 Tax=Nicotiana TaxID=4085 RepID... [more]
UPI0005C917F22.760e-4936.14zinc phosphodiesterase ELAC protein 2 n=1 Tax=Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1270contigF-serratus_M_contig1270:139910..144587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000810.1
Exons4
Model size2017
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1270.2019.1prot_F-serratus_M_contig1270.2019.1Fucus serratus malepolypeptideF-serratus_M_contig1270 139996..143544 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.4810352-UTR-F-serratus_M_contig1270:139909..1399951622929205.4810352-UTR-F-serratus_M_contig1270:139909..139995Fucus serratus maleUTRF-serratus_M_contig1270 139910..139995 +
1690962749.6499543-UTR-F-serratus_M_contig1270:139909..1399951690962749.6499543-UTR-F-serratus_M_contig1270:139909..139995Fucus serratus maleUTRF-serratus_M_contig1270 139910..139995 +
1622929205.5635986-UTR-F-serratus_M_contig1270:143544..1445871622929205.5635986-UTR-F-serratus_M_contig1270:143544..144587Fucus serratus maleUTRF-serratus_M_contig1270 143545..144587 +
1690962749.696171-UTR-F-serratus_M_contig1270:143544..1445871690962749.696171-UTR-F-serratus_M_contig1270:143544..144587Fucus serratus maleUTRF-serratus_M_contig1270 143545..144587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.4965355-CDS-F-serratus_M_contig1270:139995..1404181622929205.4965355-CDS-F-serratus_M_contig1270:139995..140418Fucus serratus maleCDSF-serratus_M_contig1270 139996..140418 +
1690962749.6607227-CDS-F-serratus_M_contig1270:139995..1404181690962749.6607227-CDS-F-serratus_M_contig1270:139995..140418Fucus serratus maleCDSF-serratus_M_contig1270 139996..140418 +
1622929205.5131922-CDS-F-serratus_M_contig1270:142309..1424381622929205.5131922-CDS-F-serratus_M_contig1270:142309..142438Fucus serratus maleCDSF-serratus_M_contig1270 142310..142438 +
1690962749.6694057-CDS-F-serratus_M_contig1270:142309..1424381690962749.6694057-CDS-F-serratus_M_contig1270:142309..142438Fucus serratus maleCDSF-serratus_M_contig1270 142310..142438 +
1622929205.530763-CDS-F-serratus_M_contig1270:142924..1430041622929205.530763-CDS-F-serratus_M_contig1270:142924..143004Fucus serratus maleCDSF-serratus_M_contig1270 142925..143004 +
1690962749.6776133-CDS-F-serratus_M_contig1270:142924..1430041690962749.6776133-CDS-F-serratus_M_contig1270:142924..143004Fucus serratus maleCDSF-serratus_M_contig1270 142925..143004 +
1622929205.5475204-CDS-F-serratus_M_contig1270:143288..1435441622929205.5475204-CDS-F-serratus_M_contig1270:143288..143544Fucus serratus maleCDSF-serratus_M_contig1270 143289..143544 +
1690962749.6858978-CDS-F-serratus_M_contig1270:143288..1435441690962749.6858978-CDS-F-serratus_M_contig1270:143288..143544Fucus serratus maleCDSF-serratus_M_contig1270 143289..143544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1270.2019.1

>prot_F-serratus_M_contig1270.2019.1 ID=prot_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=polypeptide|length=296bp
MEARDTFPIEMDLKRGECWGNDLVFRHSRRRKHRVSAATPWSMSSGHGSN
EVLNPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLKGHLYR
QAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAAT
EGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQSTLLEVLRTV
RDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVK
FVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYLQ*
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mRNA from alignment at F-serratus_M_contig1270:139910..144587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1270.2019.1 ID=mRNA_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=mRNA|length=4678bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139910..144587+ (Fucus serratus male)
GGACTGTTAGCTCCCGAGGTCCTGGAGTTTGCTCCGTTCACCAACAGAGA TCATGTCACCGCCGACGTTCAGTGGCTAGACGCGCTATGGAGGCGAGGGA CACTTTTCCGATAGAGATGGATTTGAAACGTGGAGAATGCTGGGGGAATG ATTTAGTTTTTCGTCACTCCCGCCGTCGTAAACATCGTGTTTCGGCCGCG ACGCCGTGGAGCATGTCCAGCGGTCATGGGAGCAACGAGGTGTTGAACCC CCTCAGCAGAGACGACCCCGAGCGTGCCCGTATCAACAGCTTCATAACCA TCCTCGCTGAAACACCTGTAACAGAGTGGAAACCAGCTATCCTTGACGAA TATCTGTCGAGCTTGTTGAAAGGACATCTCTACAGGCAAGCCATGGCGGA GAGACTATCAAATGTGCGGAGTGGCGAGGAACGGGAGGCGCTGACAAGGG TAGACGCGTTTCTGACTGGCTACCTCGGGCAGGAGCGACGAAAGGCGTCC CGGAAAAAGGTCAGTAGTTGCCGAGTACCCAACTGTACGTCAAGATTTGG GAATGCCCATTCGTCTTAACACCACCAGGCAACGCTGTCGCCGTCTATTT GACAGGTGGTGGGAGGTCTACGGAGGCTCATGTGGCCTTTTGAGCAAGAA ATTGCGATCTGAAACGCGGTCATAAAATATCACCTCATGTACATTAGCTT AGGTATGAAAACTAACTGTAACATCAAGGTTGAATACAAAGTGATTTAAC CTGGGTGTGGAGAATGAGCGGGCTGAGGCGGGTCAGGACGGCCGAATCTG CCTCGTGAAACGAAATCTCAGGCGCGAACGGGGATAGGGAAAATATTCAT TTTCACTGTTCAGCTGACCACGAGCAGAACCGTTTCGGTTGACACTCATT TTGCTGTATGTGTACACACATACATACATGCATACACACAAAGTGGATGA AGGAAAGGAGGGGCGTACATTAATTGGTCCATGTATGGTCACACATATAG CAAGAGTATGGATCAACCTGTTAAGGTTGCCAATCCTGCTCGTGGTCAGC TAAACAGAGAAAATAATATTCCCCTGTCCGCGTTCGCGCCTGGGAATTTG GTCTCGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCT CCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTC CGCGGCGGCGTCCATATATTAATATTAAACCGCCATACGCCATCGGGTCA GTCCCGAGTAAATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCC GAGAATCCGCCGGCACAGGGCCAGCATACCTCAAGGTAGTTTCGAACGAG TGCTGCCTTCGCAGGTCACTATGGACCAATTAATATACGCCTTTCTTTCC CACACCCACTATTGGTTATGAAGTGGGCATGTTGAAAGCAACGGCGAATG GGGTTACCTGAATAGACATTCTGATTTTTCTTTAAACACCCTTAATCGAG CTATCTTGAGAACTACCAGCCCTTTGCCGGCGGACACTCGGGGACGAACG CCATCGGTGCCCAATTGCGTGACTGAATAAGCGCAGGGCTGACATGATGG CGGTTGTCGGTGCAGATGGACACCCTCGCAGAAAGCGGAGGAAGGACAGG AGCTGGTGAGTAAGCGCCAGATTTAGTCTGGATGTGGAAAACGAGCGAGC TGGCGCGGGACGGGGCGTACATTGAATTGGTCCATGGAGTTACCTGAATA GACAACACCCATTACTCGAGCTACCTTGAGGGCTGCTGAACCTGCTGTGC CTGCGGACTCTCAGTGACGAACGCTATCATCGGTACCAAATTACTTTACT GGGTAAGCGCGGGGCTGACATTCATCGGCGGTTGACGGTATTGAGGGCCA CCGTCGCGGAAAATGGAGAAAGGAGAGGAGCCCTTGAGTAAGCACCAGAT TAAAGCCTGAATGTGGAGAATGAGCGAGCTGACGCGGGACGGGACGACCA AATCTATCTCGCAAAACCAAATTCTCAGGCGCGAACGGGGACAAGAGTTT TTTTTCTCCCCCTGTTCTGCTGATCACAAGCACAATTAGTAACCAGTAAT AAATACACCTGAGTGATGCCCAATCTTTTGAAAGTGATAAACTGAGACAC CATCACAATTTTGTACACATGTGTGACCATACATACAAGCTGTAGACCTC TGTTAATAATATATTACCGCGTTACACTGAACCTGAAACCTGCTGCATCG TACAAGTATAGGAACATTCGATCATTCAGATGGACTTCTCGCCTCTTGCC TTGAGCTAGTAATAGTGTATAACTGCCTTGAACAGAGCACCCAAACAAAA AGTAGTAATCGTGGAGGGCTCTGAAAGCTGCTCCATCACATAAATGACAG GTATCAATAATCCTGACTGCAGCAACAGAAGGCGCAGCGCAACTGGACGA GGTTATTCAGATTCTCGCCAAAGAGGACCTGCTCGACAGCGACCTCACCG ACTACGTCACGAGCCTTATTTCCGGCGAGGTGATCTATCCTCTCAAGATG ATGTTGCCTTTTCCCTAATAATACGCTATAAATGGCACACCTGTATAACC AAAGTCGTTCAGTATCGAGTGCGCGACAATCAGTCCTTCAGCTCTCTATC TGGCACTAACCCACGACGGATGAACGGATTTTCGGGTGATTAATCATCGT ATCAGCGTTGCAAAATGGTACTGGAGCATCTAAAATATGCTCGAATTGAA GCCTCGATCTTGTAGGCAAGCTGAACTTGTAGGCAAGCTGAATGTAAGCT TGAGTTAGGACGCTAGCGGAAACCGCGTCCACCTCGCAGAAAGTTGGTAA CATCATTTTGTATTGCTCGAATTTAAGCCTCGATGTTGTAGACTTGTAAG CTGAACGTAAGCTGAGTTAGGACGCTACCGGAAACCGCGTCCACCGGGCA GGAAGTTGTTGACATCGTTTTTTATTGCAAGTATGGTTACACGATCTGTG CTAATCTGTACGCAGGAGAACAAGTGCGTGCAGTCGACATTGCTCGAAGT GCTCCGAACCGTACGAGATCGGATCAAGGTGGAACTCGAAACCAGGTAAG CTCCAGCGCTTTAAGAGTCGGTGCATATCTTCTCGCCCTTTTTGGAAACG ATTCGTGACCTATGCGCCGCGCGTAATCGCTCTAGAGATGAGCGGCGGGG GATAACTACAAGAAGAGCGATCCACAACCGCGAAGATGAGCTAACAGCGT ACTCGTGCACAAATTTCGGGAACTGAGATGCGCGCTCTCGACGGAATCCC GTGGGACGAGCAGATGCAACCTGTAACATAAATAAAAGCCCGTGGTTGCG GGTGGCCATTTTTTTTTGTGCTCGGACAGGTCAAGACCGGAGATTCGAAC GCTTGCGCAGGCGCTCCAGATCGGCGATCCACGGGAGCGCAAGGAGTTCT TGCAGCACGCATTCACAAGGCTCGAGGACCTGGACGAGTTCGTTAAATTT GTGGAAGAAGGGGTTGAGTACATGGGGGATGACTTTGGGGTCTCGATGCG GTCCAACATGCCGCAGGAGAACTTTGACAAGATGAAGATGATATACGCCG AGGCGGCGGCAATTAGAAGGCAGTATCTTCAATGAAAAACCCGGAATTTG GAGATCGATCTACAAGAAACGTTCTATAGACCAATCAGTACATAACCTTC CAATTATCTAGAGACACCGAATGGACGCTGGTTCCGTATGCTCAAACTAT TGAATAGATATTTTATCTAAATCCGTGGGCGTCTTACGCGAGCACAATTT CTTGGACGTCATCCTCCTCGGATTTTGCTTCTAAGACCTGGCTCAGAACT CTCGCAGCTGCCGGGAGTACACTTATGGTAGCCCTGTTCAACACCATACC GTCAAACGCTACGCAGAAATGCTGCGCCCGCTCGGGATCTAGCACCGGCA CTCGCGGATACCTCTGCGAAAAATGGGTCAGCACAATTTCCTTCGCACGC ATACGCCTGCCCACATCCACAGCCTCCGAAGTAGTGCAGTGGGATTTGGA CACTGCATCCTGCTGCATGGAGTCATCGAAGGTGGCCTCGTGAACGAGGA GGTCTGCCCCGGCCCCGGCTCTTACCAGGCGATCGCAAGGCCGTGTGTCC CCGCTGTAAACCAACTTGGCACCACCTTTCCACAATTGAAGCACAAGGCC GTATGCGTCATAGCAGTGGAAGACGGGTACCGAGCGCATTCCTTCCAACA GCATCGCGGCCCCTTTCCGCCCTCCTCTGCCGCCCTCCCCGTCAAAGTTG CCACCGCTGGCGCCACGCCAGGAATCATTACGCATGGTATCCCGAATGCA CACACCTTTAAACGACATCTCCTCGCCCGAAAAATTCTTGCACACCTCTA AAAAATCGAGCACGACCTGCGGCGCCACGACAGCGATTGGGTCAGTGCCT TCGGGCGAACGATTTCCGACTGCCAGCCGTTCAGCTACCCGGGCGCGGTG GTGCGCGGCGATGATGCGGAAAAGCCCAGTACGATGATCCGCGTGCTTGT GCGAGATCCAAACGCAATCAAGACCTCGGATTTCTCGCTGTGCCCCCTCC ACCCCGAACTGTCTCTCCATATGCCCGAGAGTGCCTCCTCCGGCATCCAT CAAAAGGCGAAGGGGCTCCCCCTCCGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1270:139910..144587+

>mRNA_F-serratus_M_contig1270.2019.1 ID=mRNA_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139910..144587+ (Fucus serratus male)
ATGGAGGCGAGGGACACTTTTCCGATAGAGATGGATTTGAAACGTGGAGA
ATGCTGGGGGAATGATTTAGTTTTTCGTCACTCCCGCCGTCGTAAACATC
GTGTTTCGGCCGCGACGCCGTGGAGCATGTCCAGCGGTCATGGGAGCAAC
GAGGTGTTGAACCCCCTCAGCAGAGACGACCCCGAGCGTGCCCGTATCAA
CAGCTTCATAACCATCCTCGCTGAAACACCTGTAACAGAGTGGAAACCAG
CTATCCTTGACGAATATCTGTCGAGCTTGTTGAAAGGACATCTCTACAGG
CAAGCCATGGCGGAGAGACTATCAAATGTGCGGAGTGGCGAGGAACGGGA
GGCGCTGACAAGGGTAGACGCGTTTCTGACTGGCTACCTCGGGCAGGAGC
GACGAAAGGCGTCCCGGAAAAAGATGGAGGCGAGGGACACTTTTCCGATA
GAGATGGATTTGAAACGTGGAGAATGCTGGGGGAATGATTTAGTTTTTCG
TCACTCCCGCCGTCGTAAACATCGTGTTTCGGCCGCGACGCCGTGGAGCA
TGTCCAGCGGTCATGGGAGCAACGAGGTGTTGAACCCCCTCAGCAGAGAC
GACCCCGAGCGTGCCCGTATCAACAGCTTCATAACCATCCTCGCTGAAAC
ACCTGTAACAGAGTGGAAACCAGCTATCCTTGACGAATATCTGTCGAGCT
TGTTGAAAGGACATCTCTACAGGCAAGCCATGGCGGAGAGACTATCAAAT
GTGCGGAGTGGCGAGGAACGGGAGGCGCTGACAAGGGTAGACGCGTTTCT
GACTGGCTACCTCGGGCAGGAGCGACGAAAGGCGTCCCGGAAAAAGGTAT
CAATAATCCTGACTGCAGCAACAGAAGGCGCAGCGCAACTGGACGAGGTT
ATTCAGATTCTCGCCAAAGAGGACCTGCTCGACAGCGACCTCACCGACTA
CGTCACGAGCCTTATTTCCGGCGAGGTATCAATAATCCTGACTGCAGCAA
CAGAAGGCGCAGCGCAACTGGACGAGGTTATTCAGATTCTCGCCAAAGAG
GACCTGCTCGACAGCGACCTCACCGACTACGTCACGAGCCTTATTTCCGG
CGAGGAGAACAAGTGCGTGCAGTCGACATTGCTCGAAGTGCTCCGAACCG
TACGAGATCGGATCAAGGTGGAACTCGAAACCAGGAGAACAAGTGCGTGC
AGTCGACATTGCTCGAAGTGCTCCGAACCGTACGAGATCGGATCAAGGTG
GAACTCGAAACCAGGTCAAGACCGGAGATTCGAACGCTTGCGCAGGCGCT
CCAGATCGGCGATCCACGGGAGCGCAAGGAGTTCTTGCAGCACGCATTCA
CAAGGCTCGAGGACCTGGACGAGTTCGTTAAATTTGTGGAAGAAGGGGTT
GAGTACATGGGGGATGACTTTGGGGTCTCGATGCGGTCCAACATGCCGCA
GGAGAACTTTGACAAGATGAAGATGATATACGCCGAGGCGGCGGCAATTA
GAAGGCAGTATCTTCAATGAGTCAAGACCGGAGATTCGAACGCTTGCGCA
GGCGCTCCAGATCGGCGATCCACGGGAGCGCAAGGAGTTCTTGCAGCACG
CATTCACAAGGCTCGAGGACCTGGACGAGTTCGTTAAATTTGTGGAAGAA
GGGGTTGAGTACATGGGGGATGACTTTGGGGTCTCGATGCGGTCCAACAT
GCCGCAGGAGAACTTTGACAAGATGAAGATGATATACGCCGAGGCGGCGG
CAATTAGAAGGCAGTATCTTCAATGA
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