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Homology
BLAST of mRNA_F-serratus_M_contig88.20165.1 vs. uniprot
Match: D7FV45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45_ECTSI) HSP 1 Score: 104 bits (259), Expect = 7.190e-24 Identity = 65/99 (65.66%), Postives = 79/99 (79.80%), Query Frame = 3
Query: 3 MAFISPSTPMTCRGVARASARSRNSERG-LLMASRPNAKKEKRQRNRDNMRKFTKKGTSRKKLMRVQRQERAAEAESDFMAQVFHTGMDDWEEDDIFAE 296
+AF++P T T R A SARS S RG LM+ R NAKKEKR RNR NMRKF K+GTSRKK++RV+RQERAAE E++F+A+VFH+GMDDWEE DIF+E
Sbjct: 17 LAFVTPMT--TLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKVFHSGMDDWEEVDIFSE 113
BLAST of mRNA_F-serratus_M_contig88.20165.1 vs. uniprot
Match: A0A835YKP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 8.050e-8 Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 3
Query: 75 SERGLLMASRPNAKKEKRQRNRDNMRKFTKKGTSRKKLMRVQRQERAAEAESDFMAQVF 251
SE L MA R NAKK+K +RN+DNMRKF K+GTS+KK++R +RQ+ A E E+DFMA+++
Sbjct: 37 SESRLSMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLY 95
BLAST of mRNA_F-serratus_M_contig88.20165.1 vs. uniprot
Match: A0A835ZDX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX5_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.690e-7 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3
Query: 87 LLMASRPNAKKEKRQRNRDNMRKFTKKGTSRKKLMRVQRQERAAEAESDFMAQV 248
L MA R NAKK+K +RN+DNMRKF K+GTS+KK++R +RQ+ A E E+DFMA++
Sbjct: 42 LTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
BLAST of mRNA_F-serratus_M_contig88.20165.1 vs. uniprot
Match: A0A7R9YX41_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YX41_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 5.110e-5 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 3
Query: 90 LMASRPNAKKEKRQRNRDNMRKFTKKGTSRKKLMRVQRQERAAEAESDFMAQVF 251
L A R NAKKEKRQRNR+NMRKF K+G SRKK+M+ +A +AE++F+A+ F
Sbjct: 62 LEACRVNAKKEKRQRNRENMRKFQKRGLSRKKVMKKAFSAQARQAENEFLAKCF 115
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 108.6 |
| Seed ortholog evalue | 1.7e-21 |
| Seed eggNOG ortholog | 2880.D7FV45 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E66M@1,2SCXT@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-12_005120.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1092 |
| Cds size | 300 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932564.5006666-UTR-F-serratus_M_contig88:520857..521647 | 1622932564.5006666-UTR-F-serratus_M_contig88:520857..521647 | Fucus serratus male | UTR | F-serratus_M_contig88 520858..521647 - |
| 1690964368.0794737-UTR-F-serratus_M_contig88:520857..521647 | 1690964368.0794737-UTR-F-serratus_M_contig88:520857..521647 | Fucus serratus male | UTR | F-serratus_M_contig88 520858..521647 - |
| 1622932564.6359646-UTR-F-serratus_M_contig88:526898..526900 | 1622932564.6359646-UTR-F-serratus_M_contig88:526898..526900 | Fucus serratus male | UTR | F-serratus_M_contig88 526899..526900 - |
| 1690964368.1337702-UTR-F-serratus_M_contig88:526898..526900 | 1690964368.1337702-UTR-F-serratus_M_contig88:526898..526900 | Fucus serratus male | UTR | F-serratus_M_contig88 526899..526900 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932564.5291703-CDS-F-serratus_M_contig88:521647..521782 | 1622932564.5291703-CDS-F-serratus_M_contig88:521647..521782 | Fucus serratus male | CDS | F-serratus_M_contig88 521648..521782 - |
| 1690964368.0912528-CDS-F-serratus_M_contig88:521647..521782 | 1690964368.0912528-CDS-F-serratus_M_contig88:521647..521782 | Fucus serratus male | CDS | F-serratus_M_contig88 521648..521782 - |
| 1622932564.5559573-CDS-F-serratus_M_contig88:522236..522278 | 1622932564.5559573-CDS-F-serratus_M_contig88:522236..522278 | Fucus serratus male | CDS | F-serratus_M_contig88 522237..522278 - |
| 1690964368.1018798-CDS-F-serratus_M_contig88:522236..522278 | 1690964368.1018798-CDS-F-serratus_M_contig88:522236..522278 | Fucus serratus male | CDS | F-serratus_M_contig88 522237..522278 - |
| 1622932564.577552-CDS-F-serratus_M_contig88:523138..523185 | 1622932564.577552-CDS-F-serratus_M_contig88:523138..523185 | Fucus serratus male | CDS | F-serratus_M_contig88 523139..523185 - |
| 1690964368.1123264-CDS-F-serratus_M_contig88:523138..523185 | 1690964368.1123264-CDS-F-serratus_M_contig88:523138..523185 | Fucus serratus male | CDS | F-serratus_M_contig88 523139..523185 - |
| 1622932564.60017-CDS-F-serratus_M_contig88:526822..526898 | 1622932564.60017-CDS-F-serratus_M_contig88:526822..526898 | Fucus serratus male | CDS | F-serratus_M_contig88 526823..526898 - |
| 1690964368.1235394-CDS-F-serratus_M_contig88:526822..526898 | 1690964368.1235394-CDS-F-serratus_M_contig88:526822..526898 | Fucus serratus male | CDS | F-serratus_M_contig88 526823..526898 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig88.20165.1 >prot_F-serratus_M_contig88.20165.1 ID=prot_F-serratus_M_contig88.20165.1|Name=mRNA_F-serratus_M_contig88.20165.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MAFISPSTPMTCRGVARASARSRNSERGLLMASRPNAKKEKRQRNRDNMR KFTKKGTSRKKLMRVQRQERAAEAESDFMAQVFHTGMDDWEEDDIFAED* back to topmRNA from alignment at F-serratus_M_contig88:520858..526900- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig88.20165.1 ID=mRNA_F-serratus_M_contig88.20165.1|Name=mRNA_F-serratus_M_contig88.20165.1|organism=Fucus serratus male|type=mRNA|length=6043bp|location=Sequence derived from alignment at F-serratus_M_contig88:520858..526900- (Fucus serratus male) CAATGGCATTTATAAGCCCGTCGACACCCATGACTTGCCGGGGAGTCGCG
AGGGCGTCTGCACGTAGTCGCAACTCAGGTACGAATATAATGACCTCTAC
CTCCACTACCTGTACTGGCTCACCTCCTACGCTGTTCCCGAATGGCATTA
GACTAGAGCATTCGTTGAAGTATTGGTGCGACAATACAAACTGGTTTCCA
AGATGTGTACGATGCTATCGCGATTGAGTACCAGGTAGCTACCGGCTGTC
ACTTTTCTACGGACGGTTCGTGCCATTCGATCGCTACTCTGTGAGAACCA
AGTTAAGTACAGCGGCAGTAAAATTAGTCAGGCGGGCATCTGTGAACCGC
GTATGAGCATGATCTTACATGTTACCGGTACAGTACTACTATAATACAAC
AGAAATGTGTTCGAGTGAACAAAATCATGACTATTATTGTACTTCGCACG
TTGTAGTCAGTACAGTACATTATTTTCATAGACTACAGAGTAGTATCTCC
GAAGCTCCCTGCTAACCAAACGGCGTTTTCATGGACATGTTTCTTTCGGA
GTGCGTGCGTACCGTTAGACAGCAGCGTCACGAAGAAAAGTGTCCTCATA
CAAGCACATACAGAGTTAGGTATCTGATCTTAGGCCAACCTTTATGGGAA
ACGAAAAAACAGAAACGCAAAATACAGAAATTTGTCATTTCTGTGGCCAA
AAAATCCGTGGGGAAAAACTGTAGTTGGTCGTTTATGGGATAAAGGAAAA
ATACCAATTGGAAAATACAAAAAAAAACGGGGAGCATATCGGGTTAACCC
CGGCATTTTCGGCCACCCATCACCGCACAAAGACAGGTGCAAGTATGTAC
ACATGGCGAGTATGGATCAACCGGGTAAGGTTGCCAGTCCTGTTCGTGGT
CAACTGAACAGGGAAAAATAATATTTCCCTCTCCGCGTTTGTGCCCGAGA
ATTTAGTCCGGCGAGACAGGGTCGTTTAGTACTTAATTACGAGTACATCG
CAAATAGAGTGGGCAGAGCGACATTGTTTCGATGGCGAGCCGTCGGACGC
TCGTGACACGCAGCCCGTCCCTGCTTGATTGATCTCCGGCGCCACCCATT
CAACCGCCCCCGCCGCCGGCGATCAGCTTGTCCAGGCCCATCACCTCAAC
AGCTTTTATAAATTTCCTCCAGATCTGCTTGCCCGGGCCCATCACCTCAA
CAGATTCTATAAATTTCCTCCAAATCTGCTGCTCCGGCGATCATCGCACA
ACTACTGCTGCTCAGCACCTATCGTACAATTTTCTTCAAGCACTCGCGAG
CTCTTCTTTGCCGATATTTGATAGGAAGGATGCTACAGTCCCGACCTCCC
AATCGTTCTTGGAAGGCGTGAATCATTTCTGCGGCAAACTAAACTTGTCG
AGCCACATACAGAAATGAGCCTCATTTCTGTATGTGGGAAGAGAAAAATA
ACCTCCCACAGAAATTCGCCATTTCTGTAGGGCTACATTTCTGCGGCACG
GGGCCCATAGCGCCACGTTTACAAAAAATTCGCCACAGAAATTTCACATT
TCTGTATTTTCATGTCGTTTCTGTTTCCCATAAAGGTTGGCCTTAGGCCG
GATCGGTTTCAGGTCCAGCTTTTGGACTGACTTGTTCATGTATAGTCTAA
TTGTATGTAGTTTCACGCTTCTCGATGTATTTCTCACTGAGAAATTACCA
TTATGTCACTTTGTAAGGCCCTATATGGCCACACGTGTAGCAAGAGTATG
GATCAACCGTGTAAGGTTGCCAATCCTGCACGTGGTCAGCTGAACAGGGA
AAATGGATATTCCCCCGTCCGCGTTCGCGCTTGAGAATTTAGTGTCGCGA
GATGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTTCATACTTA
GGCTGAATCTGGTACTTACTTGCGGGATTCCTCACGAGTTCCGCGGCGGC
GTCCATTTATTCATTTAAAGCCGCCATACACCATCGGGTCAGTCCCGAGT
TTACCGGGTCACGCAATTGCGTACCAATGGCGTTCACTGCCGAGAGTCCG
CCGGCACAGGGTCAGTAACCTCAGATAGTTCCGAACGAGTGCTGCCTTGG
CAGGTCACCGTGGACGAATTAATATACGCCTCTCTTTCCCACACGCACTA
TTGGCATGAAGTGGGCATGTTGAAAGTATCGGCGACATAATATAATTGAG
ACTTCACCCCAGGGAAATCATCATCAGGGGGGAAGTCCTCATCCGCCGAT
GAAAACTTTCCGTAAGTTCTCATCGGCTAGCGATAATTTCTTTGCTTGAC
AATAATTTTCTATTTGGAGTTTGTACCCAAGTCAAAACTCGATGGAAACC
CATTTCATACGAGGTCCCTGCTGGCAAACTGGTGGGCCGTGAGTACGATG
TCAATCACCGGCAAATAGCGCTCATCACGAGTAAAAGACTTTAAAGGGGA
GGTAAACAGCTCTTAATGCTATGTATTGGTAATAATAGAGCATGCTGGTG
GGTTCACTCGATGGTAGCGAAAAGACTGCGAGGTCGAAGCAACCCCGAGT
TGAGCACAGATAAGTGGCATGTCGCCCACCCCGAACTACTAAAAATATGG
TGTAAACTCATTGGCGCGTAGAGAGTAGTTTCAAGCTCGAGGATTCCGTG
TCCGTTTTTCTGTTTTCTCAGGAGATCGTACAAGTCAAATACAACACCTG
ATGAGAGACAGATCCATTTGCAAAAATATGTGCCGTACCTGGATGGATCC
AAAGAGCTCGGAATTGAAGGATTGAAGGCTTACAACACTTTCCCGGTGCT
GCAGTATGTCGGGTCGGGGGCGCTGTGCGTCTGTGCTCGGTTTGGTAGAC
CAATAGACCCTACTGCTGCATCGCCGGTACCGCTACTGTTTGTGAGCAAT
TCTCCCTGCCGTAAACGATAGCATTGGTACTGCTGTGTGCGCTATAAAGT
CGCAAATATTAGTATAAAATTCCCTTTCTTTTCATGGGATGGAATCTCCC
GTTGCTATGACAGTCAGTTTATACTGTACGAGTAATGATTTTGTATCCAA
AAACGGAGCGTTGACGGTATAAGTAGAAGGACGATAGCAAAGTGTTTTGA
GTTAACAGTTGAAAACAGGGTAATCATCTGACATAAGTCGGTGGACTCGG
TGTGAGCTATGGGAAGACGCAGCGGTCACCTGTGGCGCAGGGCATGTCTG
CGAACACACACCCTCAGCAGCACACTGCCGCTGCACGGAATTGCTCGTAG
GCGGCAAGTTTTCGGGGGGACCGTAGGTTGTCTGCATCATAGACTTGAGA
GACCGCCTGGCATGACGAGGAATGGAGGGCTCTGATACCGTAAAAACAGC
AAATGACTCCTCTCCCTGCCTCTGGGTCGCTAATATTTGATATCGTCCGC
GTGTTTTGTGTTAAAATTACTCACTACTTCGGAGTATTATTAAGACGCGC
TAAAACCTACCTGATTCAATCCCAAGGAGAGTTTTTGACCTTGTAGCCAA
TGTTCCTATCTAAACATCTTGATAATTCCCCCCCCTGACTAGACGAATGC
TCAGAAGGTTTCCATGCGTTTTGTTTTTTCTTGAAATTAAACCTTGTAGA
GTCCTGGCTCCTACTATCCCGTCCTCTTTTTCTGCCAACGTTTCTCTCGT
AACTTACCGGTGCCGTGCTGGCGGGGATGGGGTATCGTGGCGCGGCTTTG
GGGGGGGTGTCACAGAGCGCGGCTTGCTCATGGCTTCCAGGCCTAACGCG
AAGAAGGAAAAGGTATACCAGGGTATCCCGCGAACGTTCTGTACCTAAAT
AAACCTCTTGGGTCGTAACTTTTTAGCCCTCGAAAGAATCGACCAGATAC
GTCACGAAGCTAAGTCCCGCGTGTACCTAGTGGGTATGTCCATGTAGTTA
TTCATCGTTGAAGTGCATTCATTATAATAGCAACAGCGCCTATGCGCGCG
TTATCAGGTGACTTTTTGTGTTTAAAGAAAATTTGTTTTGTCAAGGTTAG
CAGAAGTTGTGAGCTGTTTTTGAAAACGGATTGAGCTGCGGCAACGTTTT
CGAACGTCGGCATCACGGTCCGACCTGAGAACCGATTTGACAAGAAAATA
TTTGTGTTACGTCGTTGTCGTGTGAATTAACCCACACCACGGGCTACTTT
GAAATATCTAGGATGTGGTGTGAGACGTTTCCCTAGCACTTGTCTATGTG
TTGCCTTGTCGCTTGATTATGTTTATATGCCTCGGTCAATCACGGTCCTC
GAACGTCTTTCTTGGCGAAAGTTCCGTAAGCAGTGAAAACATTTTTCAAT
ACTTGCTGTTGAGTTTTGGTCGCTGGAAGGACATGTTAGCGAGTTTTGCC
ATGGGGTACGAGGACATCGGTCATCCTCAGGGCGCAGTCAAAGCAGCCCG
ATTGTGCGTCGAGACAACCATGTCGTGTGTATAACATTCGACCCGGGGCT
CGCATATCAAAAAGAGTTGTGTAGGGCCTGGACACACAAAAAAATAGCCC
TTTCTAGCTTTTGATATTCGCGTATTCCTCTCTCTCCACTCTCCACTCTC
CACTCCCTCCGCGTCGGTGGTTATGTGATCGTGATCGTCTGTCTATGTGA
TCGTGATCGTCTGTCGACGCAGAGGCAACGCAACCGCGACAACATGCGCA
AGTTCACCAAGAAGGTGAGTCAACCGCACACTGTCCATACTGCAATAGAT
CCAAGTCGCCTCTTTCTTACCGAAGATAACAGAGCTCTAGGGCTGCGCGG
GGCCAATTTATTCCGTTCCGGAGTCTATCGTTTCCCAATGTTTGAGACAA
AAGTGCCTACTTTGAACTATCAAAGTGGAGATTCGTAGAGATAAATACGC
GGAACTCGGCTTGAACGAGCGATGGCAATCCCCCCCTGACATCGTGCGTC
TTTTGAGCATCCCTCGCGGTGACTCCGAAGGGCCTTTACGATATTGAGAC
ATCAGCGGTAGCACGCAAGACTGCAAACAGAGGGGATGCGAGGAAACGAT
CTATGCCTTGAAAGCTGCTTGCGCGAAGGATCACGAGTCAGCGTTCGCTT
TGCCTCATGTACTGCGCGCTCAGACCTTGGGATGCGCTACCCTGCATTGT
ATTTTATTGCCACCTCAGGGAACGTCGCGAAAGAAACTGATGCGCGTGCA
GCGCCAGGAGCGTGCCGCAGAAGCGGAGTCCGACTTCATGGCCCAGGTGT
TTCACACCGGGATGGACGACTGGGAGGAAGATGACATCTTCGCCGAGGAT
TGAGTGTTCTCGAACTCTTTGTTTCAATCCACGTTGCGTGTGGTATCCAT
ATGCTTCCACGCCAGGAGAGTACGAGGGGACTTTTACGATATTCTTGGCT
TGCGTTTCTATTAATAGAAGGCAATGATGGGATTCAGGGGGCCATGGACC
GGCGTATTCTCGGGCGAATGGGATTATCGCACTAAAAAGCTTGGATTGTT
GACGTCCGCGGCATGTTAAATGTGGCAGTTTGACAATTTAGCTCCCAACA
ATAGGAGATGGCGAAGTATTGAGGATTGGCTGTGATTGTGAAAATGTTAG
AAGGACGAAAATCGAAATTGGCCTGTGTACATCTGAACGCCGAGAGTTCA
TGTTGAGTCAGAATCTGATGCTCCACGCTGCTAGCAGGTCACATGCGACA
ACACGGTGATGGAGCAAATGCGACAGACAGGTTCTAATACACTCGACATT
TTCCGAAGTGATAGATAAGCTAAGGCGAAATATGTAGCACCAACATTCGG
GGAATGTAAATGTCGCGATGTCAAAATGCACGTTCTGCTTTTCGCCAAAG
TAGCCTTTGGGTTGAGAGAGTACCGGTAAAATTCCCTGCCGCAGCTCGGA
CGTCGGCGTAAAATGTTCAAAAACAAGAAAAACCTTTACCCTTTGAATTA
TAAATCAATGCACAGTGCAAAACAAGTACTGGTAGACAGTATCAGCTATG
TCGTGTTCTTTGTGAGCGCGAGCGCCGTCTGCGCCGGAAACCTTCACAAC
AAGATAATAAGATAAATTGCGCGAATACGAACTATTAAAAGTA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig88:520858..526900- >mRNA_F-serratus_M_contig88.20165.1 ID=mRNA_F-serratus_M_contig88.20165.1|Name=mRNA_F-serratus_M_contig88.20165.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig88:520858..526900- (Fucus serratus male) ATGGCATTTATAAGCCCGTCGACACCCATGACTTGCCGGGGAGTCGCGAG GGCGTCTGCACGTAGTCGCAACTCAGATGGCATTTATAAGCCCGTCGACA CCCATGACTTGCCGGGGAGTCGCGAGGGCGTCTGCACGTAGTCGCAACTC AGAGCGCGGCTTGCTCATGGCTTCCAGGCCTAACGCGAAGAAGGAAAAGA GCGCGGCTTGCTCATGGCTTCCAGGCCTAACGCGAAGAAGGAAAAGAGGC AACGCAACCGCGACAACATGCGCAAGTTCACCAAGAAGAGGCAACGCAAC CGCGACAACATGCGCAAGTTCACCAAGAAGGGAACGTCGCGAAAGAAACT GATGCGCGTGCAGCGCCAGGAGCGTGCCGCAGAAGCGGAGTCCGACTTCA TGGCCCAGGTGTTTCACACCGGGATGGACGACTGGGAGGAAGATGACATC TTCGCCGAGGATTGAGGAACGTCGCGAAAGAAACTGATGCGCGTGCAGCG CCAGGAGCGTGCCGCAGAAGCGGAGTCCGACTTCATGGCCCAGGTGTTTC ACACCGGGATGGACGACTGGGAGGAAGATGACATCTTCGCCGAGGATTGA back to top
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