mRNA_F-serratus_M_contig88.20158.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20158.1
Unique NamemRNA_F-serratus_M_contig88.20158.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig88.20158.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.550e-40
Identity = 78/123 (63.41%), Postives = 89/123 (72.36%), Query Frame = -1 
Query:    1 GNRGDGIAVCGKRFHFLCAWFAGAYVKVSPTDPSFTRGERGLSGNMNTWPPRGQPRFGFPTGMAIEARCLEHSVGAPGRRGAPPGLARV-------VTPVGSGGGLAVAET---FVEDTTFEE 339
            GN GDG  VCGKRFHFLCAWFAGAYVKV  TDPSFTRGERGLSG+M  WP  G+PR+GFP GM++EARCLEHSVGAPGR+GAP   A V         P G+   +++ ET    V  TT+EE
Sbjct: 1167 GNLGDGRPVCGKRFHFLCAWFAGAYVKVDVTDPSFTRGERGLSGDMEAWPAPGEPRYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAVQQLADADALPPGT---ISLGETAGGVVRGTTWEE 1286
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BLAST of mRNA_F-serratus_M_contig88.20158.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.590e-20
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = -1 
Query:   73 KVSPTDPSFTRGERGLSGNMNTWPPRGQPRFGFPTGMAIEARCLEHSVGAPGRRGAPPGLARV 261
            +V  TDPSFT GERGLSG+M  WP  G+ R+GFP GM++EARCLEHSVGAPGR+GAP   A V
Sbjct:  995 EVDVTDPSFTMGERGLSGDMGAWPAAGEARYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAV 1057
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BLAST of mRNA_F-serratus_M_contig88.20158.1 vs. uniprot
Match: A0A836CHP9_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHP9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.780e-5
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = -1 
Query:  121 CGKRFHFLCAWFAGAYVKVSPTDPSFTRGERGLSGNMNTWPPRGQPRFGFPTGMAIEARCLEHS 312
            C +RFHFLCAWFAGA V+    DP+F      +  +  T+P       GFP  +A+ A C  HS
Sbjct: 1089 CAQRFHFLCAWFAGAVVEAQIADPTFAST---VPAHRATFP-------GFPGLLALRALCGAHS 1142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LHH7_9PHAE1.550e-4063.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV42_ECTSI3.590e-2068.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHP9_9STRA4.780e-542.19PHD-type domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:433140..433478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.3078098-CDS-F-serratus_M_contig88:433139..4334781622932560.3078098-CDS-F-serratus_M_contig88:433139..433478Fucus serratus maleCDSF-serratus_M_contig88 433140..433478 +
1690964365.9088178-CDS-F-serratus_M_contig88:433139..4334781690964365.9088178-CDS-F-serratus_M_contig88:433139..433478Fucus serratus maleCDSF-serratus_M_contig88 433140..433478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20158.1prot_F-serratus_M_contig88.20158.1Fucus serratus malepolypeptideF-serratus_M_contig88 433140..433478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20158.1

>prot_F-serratus_M_contig88.20158.1 ID=prot_F-serratus_M_contig88.20158.1|Name=mRNA_F-serratus_M_contig88.20158.1|organism=Fucus serratus male|type=polypeptide|length=113bp
LLEGSVFYKRLRDSQPSPGPHGRHDSRQSGWRPTSTGGTDRVLQAPRLDS
HTRRKPKPRLPARRPGVHVPAKPTLASGKGGIGRGNLHVRAREPRTQEVK
PLAADSDAIAPVA
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mRNA from alignment at F-serratus_M_contig88:433140..433478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20158.1 ID=mRNA_F-serratus_M_contig88.20158.1|Name=mRNA_F-serratus_M_contig88.20158.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig88:433140..433478+ (Fucus serratus male)
CTCCTCGAAGGTAGTGTCTTCTACAAACGTCTCCGCGACAGCCAGCCCTC
CCCCGGACCCCACGGGCGTCACGACTCTCGCCAGTCCGGGTGGCGCCCCA
CGTCGACCGGGGGCACCGACCGAGTGCTCCAGGCACCGCGCCTCGATAGC
CATACCCGTCGGAAACCCAAACCGCGGCTGCCCGCGCGGCGGCCAGGTGT
TCATGTTCCCGCTAAGCCCACGCTCGCCTCTGGTAAAGGAGGGATCGGTC
GGGGAAACCTTCACGTACGCGCCCGCGAACCACGCACACAAGAAGTGAAA
CCTCTTGCCGCAGACAGCGATGCCATCGCCCCGGTTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:433140..433478+

>mRNA_F-serratus_M_contig88.20158.1 ID=mRNA_F-serratus_M_contig88.20158.1|Name=mRNA_F-serratus_M_contig88.20158.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig88:433140..433478+ (Fucus serratus male)
CTCCTCGAAGGTAGTGTCTTCTACAAACGTCTCCGCGACAGCCAGCCCTC
CCCCGGACCCCACGGGCGTCACGACTCTCGCCAGTCCGGGTGGCGCCCCA
CGTCGACCGGGGGCACCGACCGAGTGCTCCAGGCACCGCGCCTCGATAGC
CATACCCGTCGGAAACCCAAACCGCGGCTGCCCGCGCGGCGGCCAGGTGT
TCATGTTCCCGCTAAGCCCACGCTCGCCTCTGGTAAAGGAGGGATCGGTC
GGGGAAACCTTCACGTACGCGCCCGCGAACCACGCACACAAGAAGTGAAA
CCTCTTGCCGCAGACAGCGATGCCATCGCCCCGGTTGCCCTCCTCGAAGG
TAGTGTCTTCTACAAACGTCTCCGCGACAGCCAGCCCTCCCCCGGACCCC
ACGGGCGTCACGACTCTCGCCAGTCCGGGTGGCGCCCCACGTCGACCGGG
GGCACCGACCGAGTGCTCCAGGCACCGCGCCTCGATAGCCATACCCGTCG
GAAACCCAAACCGCGGCTGCCCGCGCGGCGGCCAGGTGTTCATGTTCCCG
CTAAGCCCACGCTCGCCTCTGGTAAAGGAGGGATCGGTCGGGGAAACCTT
CACGTACGCGCCCGCGAACCACGCACACAAGAAGTGAAACCTCTTGCCGC
AGACAGCGATGCCATCGCCCCGGTTGCC
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