mRNA_F-serratus_M_contig88.20151.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20151.1
Unique NamemRNA_F-serratus_M_contig88.20151.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:248531..249127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.2356076-CDS-F-serratus_M_contig88:248530..2490041622932560.2356076-CDS-F-serratus_M_contig88:248530..249004Fucus serratus maleCDSF-serratus_M_contig88 248531..249004 +
1690964365.875478-CDS-F-serratus_M_contig88:248530..2490041690964365.875478-CDS-F-serratus_M_contig88:248530..249004Fucus serratus maleCDSF-serratus_M_contig88 248531..249004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.2568116-UTR-F-serratus_M_contig88:249004..2491271622932560.2568116-UTR-F-serratus_M_contig88:249004..249127Fucus serratus maleUTRF-serratus_M_contig88 249005..249127 +
1690964365.8953865-UTR-F-serratus_M_contig88:249004..2491271690964365.8953865-UTR-F-serratus_M_contig88:249004..249127Fucus serratus maleUTRF-serratus_M_contig88 249005..249127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20151.1prot_F-serratus_M_contig88.20151.1Fucus serratus malepolypeptideF-serratus_M_contig88 248531..249004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20151.1

>prot_F-serratus_M_contig88.20151.1 ID=prot_F-serratus_M_contig88.20151.1|Name=mRNA_F-serratus_M_contig88.20151.1|organism=Fucus serratus male|type=polypeptide|length=158bp
VLLQRRNRLVTGKNTRPLCELLVYGITQTSCGRTIKATNVEATQSSSTRF
LLSLPSPTHSTQNKQCRRTCLPEEGSCATGIRSAWSSLHPDAAAVLPDHA
TSPPISWSLSVGRGIFSMPVTKDVEVWSSTPTTRPYRAGPQRRSVGEATS
LGSAPRI*
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mRNA from alignment at F-serratus_M_contig88:248531..249127+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20151.1 ID=mRNA_F-serratus_M_contig88.20151.1|Name=mRNA_F-serratus_M_contig88.20151.1|organism=Fucus serratus male|type=mRNA|length=597bp|location=Sequence derived from alignment at F-serratus_M_contig88:248531..249127+ (Fucus serratus male)
GTTCTTCTCCAGCGGAGGAACCGTCTTGTGACAGGCAAGAATACGCGTCC
ATTATGCGAACTTTTGGTCTACGGCATCACGCAGACATCGTGCGGCCGAA
CGATTAAAGCGACGAACGTTGAGGCCACCCAATCCTCCTCCACGCGATTC
CTCTTATCCTTGCCTTCTCCGACGCACTCTACGCAAAATAAGCAGTGCCG
AAGAACGTGTCTGCCTGAAGAGGGAAGCTGTGCGACAGGCATCCGAAGTG
CTTGGTCCTCGTTACATCCCGACGCCGCCGCGGTACTTCCCGACCACGCG
ACCTCCCCGCCCATTTCATGGTCGCTATCGGTCGGGCGGGGGATTTTTTC
GATGCCCGTCACCAAGGATGTTGAGGTTTGGTCGTCAACTCCGACGACGC
GTCCCTACAGAGCTGGGCCGCAGCGCAGAAGCGTTGGCGAAGCTACCTCG
TTGGGCTCTGCACCACGAATCTAGCGGTGATAGCCCTTGTACCTTAACCA
CGGGCCGGCAGTGTCCAACCGCGCAAGGAAACGTCCACGTCGGTGCCCCA
AGCCCAGCGTCGAGAGCCGCTACGTTGGCACGTAGGCCCGACGCAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:248531..249127+

>mRNA_F-serratus_M_contig88.20151.1 ID=mRNA_F-serratus_M_contig88.20151.1|Name=mRNA_F-serratus_M_contig88.20151.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig88:248531..249127+ (Fucus serratus male)
GTTCTTCTCCAGCGGAGGAACCGTCTTGTGACAGGCAAGAATACGCGTCC
ATTATGCGAACTTTTGGTCTACGGCATCACGCAGACATCGTGCGGCCGAA
CGATTAAAGCGACGAACGTTGAGGCCACCCAATCCTCCTCCACGCGATTC
CTCTTATCCTTGCCTTCTCCGACGCACTCTACGCAAAATAAGCAGTGCCG
AAGAACGTGTCTGCCTGAAGAGGGAAGCTGTGCGACAGGCATCCGAAGTG
CTTGGTCCTCGTTACATCCCGACGCCGCCGCGGTACTTCCCGACCACGCG
ACCTCCCCGCCCATTTCATGGTCGCTATCGGTCGGGCGGGGGATTTTTTC
GATGCCCGTCACCAAGGATGTTGAGGTTTGGTCGTCAACTCCGACGACGC
GTCCCTACAGAGCTGGGCCGCAGCGCAGAAGCGTTGGCGAAGCTACCTCG
TTGGGCTCTGCACCACGAATCTAGGTTCTTCTCCAGCGGAGGAACCGTCT
TGTGACAGGCAAGAATACGCGTCCATTATGCGAACTTTTGGTCTACGGCA
TCACGCAGACATCGTGCGGCCGAACGATTAAAGCGACGAACGTTGAGGCC
ACCCAATCCTCCTCCACGCGATTCCTCTTATCCTTGCCTTCTCCGACGCA
CTCTACGCAAAATAAGCAGTGCCGAAGAACGTGTCTGCCTGAAGAGGGAA
GCTGTGCGACAGGCATCCGAAGTGCTTGGTCCTCGTTACATCCCGACGCC
GCCGCGGTACTTCCCGACCACGCGACCTCCCCGCCCATTTCATGGTCGCT
ATCGGTCGGGCGGGGGATTTTTTCGATGCCCGTCACCAAGGATGTTGAGG
TTTGGTCGTCAACTCCGACGACGCGTCCCTACAGAGCTGGGCCGCAGCGC
AGAAGCGTTGGCGAAGCTACCTCGTTGGGCTCTGCACCACGAATCTAG
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