mRNA_F-serratus_M_contig88.20147.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20147.1
Unique NamemRNA_F-serratus_M_contig88.20147.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:152719..153352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size635
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.1776278-CDS-F-serratus_M_contig88:152718..1531951622932560.1776278-CDS-F-serratus_M_contig88:152718..153195Fucus serratus maleCDSF-serratus_M_contig88 152719..153195 +
1690964365.8541143-CDS-F-serratus_M_contig88:152718..1531951690964365.8541143-CDS-F-serratus_M_contig88:152718..153195Fucus serratus maleCDSF-serratus_M_contig88 152719..153195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.1964564-UTR-F-serratus_M_contig88:153195..1533521622932560.1964564-UTR-F-serratus_M_contig88:153195..153352Fucus serratus maleUTRF-serratus_M_contig88 153196..153352 +
1690964365.8654187-UTR-F-serratus_M_contig88:153195..1533521690964365.8654187-UTR-F-serratus_M_contig88:153195..153352Fucus serratus maleUTRF-serratus_M_contig88 153196..153352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20147.1prot_F-serratus_M_contig88.20147.1Fucus serratus malepolypeptideF-serratus_M_contig88 152719..153195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20147.1

>prot_F-serratus_M_contig88.20147.1 ID=prot_F-serratus_M_contig88.20147.1|Name=mRNA_F-serratus_M_contig88.20147.1|organism=Fucus serratus male|type=polypeptide|length=159bp
LPVHRPFYFCYGEWGRLYFAGLFSDGVRGTHLGVLFSRHCERAVKVLRLL
APLQRRPVFFQPLPHFTAPLVFLLEAFFQQQIVDSFGGSFVFLRPPSMRQ
QGIRGVHTHLMLLRLGPRAPALKCGYLPVPLLSVHFSPRECGNVPSAAAG
SSAAGVSR*
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mRNA from alignment at F-serratus_M_contig88:152719..153352+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20147.1 ID=mRNA_F-serratus_M_contig88.20147.1|Name=mRNA_F-serratus_M_contig88.20147.1|organism=Fucus serratus male|type=mRNA|length=634bp|location=Sequence derived from alignment at F-serratus_M_contig88:152719..153352+ (Fucus serratus male)
CTTCCGGTACATAGACCGTTCTACTTCTGCTACGGAGAGTGGGGGCGACT
CTACTTCGCTGGGTTGTTTTCCGATGGGGTTCGGGGTACTCATCTCGGTG
TTTTGTTCAGCCGCCATTGCGAGAGGGCAGTCAAGGTCCTGCGCCTCCTC
GCGCCGCTCCAGCGCCGGCCCGTCTTCTTCCAGCCACTCCCCCATTTTAC
CGCGCCGCTCGTGTTCCTCCTCGAGGCGTTCTTCCAACAGCAAATCGTGG
ACTCGTTCGGTGGCAGTTTCGTCTTCCTCCGTCCTCCAAGCATGCGTCAG
CAGGGCATCCGCGGTGTCCACACCCATTTGATGTTGCTTCGACTGGGACC
GCGTGCGCCCGCCTTGAAGTGCGGGTATCTTCCCGTCCCACTTCTGTCAG
TGCACTTCTCTCCCCGCGAGTGTGGGAACGTCCCCTCTGCTGCTGCTGGT
TCTTCTGCCGCTGGAGTTTCCCGATGATGCCGCGGGGTCGCCTTCCGCTA
CTCCCCCGGCTCCTGCTCCAGTTTCTGCCGTTTCTGCCTCCCGCATTACG
GTTAGCATGGGCCCCACCTCCGTGTCGTCAAGGTCGGACTCGCCGTCCAA
ATCTTCTTCCACCCTCCCTCCGCCTTGACTCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:152719..153352+

>mRNA_F-serratus_M_contig88.20147.1 ID=mRNA_F-serratus_M_contig88.20147.1|Name=mRNA_F-serratus_M_contig88.20147.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig88:152719..153352+ (Fucus serratus male)
CTTCCGGTACATAGACCGTTCTACTTCTGCTACGGAGAGTGGGGGCGACT
CTACTTCGCTGGGTTGTTTTCCGATGGGGTTCGGGGTACTCATCTCGGTG
TTTTGTTCAGCCGCCATTGCGAGAGGGCAGTCAAGGTCCTGCGCCTCCTC
GCGCCGCTCCAGCGCCGGCCCGTCTTCTTCCAGCCACTCCCCCATTTTAC
CGCGCCGCTCGTGTTCCTCCTCGAGGCGTTCTTCCAACAGCAAATCGTGG
ACTCGTTCGGTGGCAGTTTCGTCTTCCTCCGTCCTCCAAGCATGCGTCAG
CAGGGCATCCGCGGTGTCCACACCCATTTGATGTTGCTTCGACTGGGACC
GCGTGCGCCCGCCTTGAAGTGCGGGTATCTTCCCGTCCCACTTCTGTCAG
TGCACTTCTCTCCCCGCGAGTGTGGGAACGTCCCCTCTGCTGCTGCTGGT
TCTTCTGCCGCTGGAGTTTCCCGATGACTTCCGGTACATAGACCGTTCTA
CTTCTGCTACGGAGAGTGGGGGCGACTCTACTTCGCTGGGTTGTTTTCCG
ATGGGGTTCGGGGTACTCATCTCGGTGTTTTGTTCAGCCGCCATTGCGAG
AGGGCAGTCAAGGTCCTGCGCCTCCTCGCGCCGCTCCAGCGCCGGCCCGT
CTTCTTCCAGCCACTCCCCCATTTTACCGCGCCGCTCGTGTTCCTCCTCG
AGGCGTTCTTCCAACAGCAAATCGTGGACTCGTTCGGTGGCAGTTTCGTC
TTCCTCCGTCCTCCAAGCATGCGTCAGCAGGGCATCCGCGGTGTCCACAC
CCATTTGATGTTGCTTCGACTGGGACCGCGTGCGCCCGCCTTGAAGTGCG
GGTATCTTCCCGTCCCACTTCTGTCAGTGCACTTCTCTCCCCGCGAGTGT
GGGAACGTCCCCTCTGCTGCTGCTGGTTCTTCTGCCGCTGGAGTTTCCCG
ATGA
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