mRNA_F-serratus_M_contig875.20108.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig875.20108.1
Unique NamemRNA_F-serratus_M_contig875.20108.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.210e-44
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVD 270
            +VG+ADYQELA+GQMLGG DGFLKLIFHT+TLKLLGVHCIG+G+TEIIHIGQ    QGGTIEYF+TAVFN+PTLAEAY VAAADGLRKVD
Sbjct:  419 EVGLADYQELAKGQMLGGADGFLKLIFHTETLKLLGVHCIGDGATEIIHIGQVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 508
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A662XJN9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJN9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.190e-38
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDALAD 282
            +VG+A Y+ELA+GQMLGGV GFLK+IF   TLK+LGVH IGEG+TEIIHIGQ     GGTIEYFR AVFNYPTLAEAY VAA +GLRKV+ L D
Sbjct:  184 EVGVARYEELAKGQMLGGVPGFLKIIFCPQTLKVLGVHAIGEGATEIIHIGQVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVEHLRD 277
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A8J5JAY8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAY8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 5.070e-37
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VG+A Y+ELARGQMLGGV GFLK+IF  DTLK+LGVH IGEG+TEIIHIGQ     GGT+EYFR AVFNYPTLAEAY VAA +GLRK+D L
Sbjct:  460 EVGVARYEELARGQMLGGVPGFLKIIFCPDTLKILGVHAIGEGATEIIHIGQVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKIDRL 551
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.200e-36
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKV 267
            ++G+AD+ ELA+GQMLGG DGFLKLIFH +TL+LLGVH IGEG+TEIIHIGQ     GGT++YFR AVFNYPTLAEAY VAA D  RK+
Sbjct:  497 EIGVADFTELAKGQMLGGADGFLKLIFHRETLQLLGVHAIGEGATEIIHIGQVVMAMGGTVDYFRNAVFNYPTLAEAYNVAAHDAFRKI 585
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A6A3FH22_9STRA (Putative soluble pyridine nucleotide transhydrogenase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FH22_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.390e-36
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VG+A Y+ELARGQMLGG+ GFLK+IF  +TLK+LGVH IGEG+TEIIHIGQ     GGT+EYFR AVFNYPTLAEAY VAA +GLRKVD L
Sbjct:  465 EVGMARYEELARGQMLGGLPGFLKIIFCPETLKILGVHAIGEGATEIIHIGQVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKVDRL 556
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: M4BCY3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCY3_HYAAE)

HSP 1 Score: 138 bits (347), Expect = 2.520e-36
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VGIA Y+ELA+GQMLGGV GFLK+IF   TLKLLGVH IGEG+TEIIHIGQ      GT+EYFR AVFNYPTLAEAY VAA DGLRKVD L
Sbjct:  471 EVGIARYEELAKGQMLGGVPGFLKIIFCPKTLKLLGVHAIGEGATEIIHIGQVVMSTDGTLEYFRNAVFNYPTLAEAYRVAALDGLRKVDRL 562
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A225VHW9_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VHW9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.870e-36
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDALAD 282
            +VG+A Y+ELA+GQMLGGV GFLK+IF  +TLK+ GVH IGEG+TEIIHIGQ     GGT+EYFR AVFNYPTLAEAY VAA +GLRK++ L D
Sbjct:  271 EVGVARYEELAKGQMLGGVPGFLKIIFCPETLKIFGVHAIGEGATEIIHIGQVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKIERLRD 364
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A024U2X5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2X5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.070e-36
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VGIA Y+ELA+GQMLGG+ GFLKLIF   TLKLLGVH IGEG+TEIIHIGQ     GGT+EYFR AVFNYPTLAEAY VA  +GLRK++AL
Sbjct:  452 EVGIARYEELAKGQMLGGMPGFLKLIFCPTTLKLLGVHAIGEGATEIIHIGQVVMSTGGTMEYFRNAVFNYPTLAEAYRVAGLNGLRKIEAL 543
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BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: K3WL68_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD)

HSP 1 Score: 136 bits (343), Expect = 8.220e-36
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VG+A Y+ELA+GQMLGGV GFLK+IF   TL+LLGVH IGEG+TEIIHIGQ     GGTIEYFR AVFNYPTLAEAY VAA +GLRKV++L
Sbjct:  456 EVGLARYEELAKGQMLGGVPGFLKIIFCPKTLQLLGVHAIGEGATEIIHIGQVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVESL 547
[Close]
BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Match: A0A5D6XJI3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJI3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.100e-35
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHIGQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDAL 276
            +VG+A Y+ELA+GQMLGGV GFLK+IF   TL LLGVH IGEG+TEIIHIGQ     GGTIEYFR AVFNYPTLAEAY VAA +GLRKV++L
Sbjct:  453 EVGVARYEELAKGQMLGGVPGFLKIIFCPKTLHLLGVHAIGEGATEIIHIGQVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVESL 544
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig875.20108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHH4_ECTSI1.210e-4484.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662XJN9_9STRA2.190e-3873.40Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A8J5JAY8_9STRA5.070e-3775.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A835ZER9_9STRA2.200e-3671.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3FH22_9STRA2.390e-3673.91Putative soluble pyridine nucleotide transhydrogen... [more]
M4BCY3_HYAAE2.520e-3676.09Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A225VHW9_9STRA5.870e-3670.21Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A024U2X5_9STRA8.070e-3673.91Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
K3WL68_GLOUD8.220e-3673.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XJI3_9STRA1.100e-3573.91Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig875contigF-serratus_M_contig875:23743..24460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.3e-38
Seed eggNOG ortholog2880.D7FHH4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrolipoyl dehydrogenase activity
EggNOG OGsCOG1249@1,KOG1335@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.9668138-CDS-F-serratus_M_contig875:23742..239091622932553.9668138-CDS-F-serratus_M_contig875:23742..23909Fucus serratus maleCDSF-serratus_M_contig875 23743..23909 +
1690964363.0633557-CDS-F-serratus_M_contig875:23742..239091690964363.0633557-CDS-F-serratus_M_contig875:23742..23909Fucus serratus maleCDSF-serratus_M_contig875 23743..23909 +
1622932553.995799-CDS-F-serratus_M_contig875:24339..244601622932553.995799-CDS-F-serratus_M_contig875:24339..24460Fucus serratus maleCDSF-serratus_M_contig875 24340..24460 +
1690964363.077845-CDS-F-serratus_M_contig875:24339..244601690964363.077845-CDS-F-serratus_M_contig875:24339..24460Fucus serratus maleCDSF-serratus_M_contig875 24340..24460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig875.20108.1prot_F-serratus_M_contig875.20108.1Fucus serratus malepolypeptideF-serratus_M_contig875 23743..24460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig875.20108.1

>prot_F-serratus_M_contig875.20108.1 ID=prot_F-serratus_M_contig875.20108.1|Name=mRNA_F-serratus_M_contig875.20108.1|organism=Fucus serratus male|type=polypeptide|length=96bp
QVGIADYQELARGQMLGGVDGFLKLIFHTDTLKLLGVHCIGEGSTEIIHI
GQASAGQGGTIEYFRTAVFNYPTLAEAYTVAAADGLRKVDALADC*
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mRNA from alignment at F-serratus_M_contig875:23743..24460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig875.20108.1 ID=mRNA_F-serratus_M_contig875.20108.1|Name=mRNA_F-serratus_M_contig875.20108.1|organism=Fucus serratus male|type=mRNA|length=718bp|location=Sequence derived from alignment at F-serratus_M_contig875:23743..24460+ (Fucus serratus male)
CAGGTCGGGATCGCGGACTACCAGGAGCTGGCAAGGGGCCAGATGTTGGG
CGGGGTGGACGGGTTCCTCAAGTTGATCTTTCACACGGACACGCTGAAGC
TGCTCGGAGTGCATTGTATCGGAGAAGGGTCCACCGAGATCATTCACATC
GGCCAGGCGAGTGCGGGGTGGTCGGCGTACCGGCGCGTGATGACATCTTT
CATGATGATAGTCAATGGCGATGACCGCCAATAGTAATAACGCCGATACA
GTTGTGTGGAGGAAAACCGTGATATTAGTTTGAACTCTCGCAGTACTTGT
ACCCTGTTTTGTTTTTCTGTTTTTGATTTGTTTTCACTGAAACCTGTATA
CTAATTAGAAGAGTAAGCTTCGTTCCTACTGGTACTCGCGGTCATGTCGC
TCTTCATAAAAATAAATAAAAGTGCACCGTTTTGTTCCAGTATTCGGAAG
AATTTCCAATACAGCTCCCGATCCCTTCTCCGCCGCTGCCCCCACTCTCC
TCTATCCTCCCCTGCCCCCCCCCATTGCTGACGGTGATGACGGAATCGAT
GTCAATTCATCTTAATTAATGTTGATTCATGCGTAGGTGGTGATGAGCCA
GGGCGGAACGATCGAGTACTTCCGTACGGCGGTGTTCAACTACCCCACGC
TGGCGGAGGCCTATACGGTTGCCGCGGCGGACGGCCTTCGGAAGGTCGAC
GCCCTCGCCGATTGTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig875:23743..24460+

>mRNA_F-serratus_M_contig875.20108.1 ID=mRNA_F-serratus_M_contig875.20108.1|Name=mRNA_F-serratus_M_contig875.20108.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig875:23743..24460+ (Fucus serratus male)
CAGGTCGGGATCGCGGACTACCAGGAGCTGGCAAGGGGCCAGATGTTGGG
CGGGGTGGACGGGTTCCTCAAGTTGATCTTTCACACGGACACGCTGAAGC
TGCTCGGAGTGCATTGTATCGGAGAAGGGTCCACCGAGATCATTCACATC
GGCCAGGCGAGTGCGGGCAGGTCGGGATCGCGGACTACCAGGAGCTGGCA
AGGGGCCAGATGTTGGGCGGGGTGGACGGGTTCCTCAAGTTGATCTTTCA
CACGGACACGCTGAAGCTGCTCGGAGTGCATTGTATCGGAGAAGGGTCCA
CCGAGATCATTCACATCGGCCAGGCGAGTGCGGGCCAGGGCGGAACGATC
GAGTACTTCCGTACGGCGGTGTTCAACTACCCCACGCTGGCGGAGGCCTA
TACGGTTGCCGCGGCGGACGGCCTTCGGAAGGTCGACGCCCTCGCCGATT
GTTAACCAGGGCGGAACGATCGAGTACTTCCGTACGGCGGTGTTCAACTA
CCCCACGCTGGCGGAGGCCTATACGGTTGCCGCGGCGGACGGCCTTCGGA
AGGTCGACGCCCTCGCCGATTGTTAA
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