mRNA_F-serratus_M_contig864.20020.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig864.20020.1
Unique NamemRNA_F-serratus_M_contig864.20020.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig864.20020.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 3.240e-21
Identity = 175/343 (51.02%), Postives = 203/343 (59.18%), Query Frame = 1 
Query:    1 PSVPAGLRRFLEQHRPSQPEI--ANGSTGPQRPPS-----RVSFKSGQVYEGQL-RRHGA---MPFGWGRVTLAEGATYEGEWSGGRVHGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GVFVDAAGGGERYEGXXXRGVRSGGGRLIQGWAEGGQ---GGENLPDLASSVSTDRFKDLAWYSGNFKDGLPHGEGAMGYGLATFCGH-----------VERGEWTGGRGVLDLGGGRGSFEGTFSKGLPRGNGSWRWENSGVEMDCTFEEGYTSSI 945
            P +P  L  FLE HRP       + GS G           RV F  G  YEGQL RR G    +P GWG +T  +   Y+G W GG V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     GVFVD A  GER+ G    G+RSG G L+QG  E  +   GGE+  + A     +   +LAWYSGNF+ GLPHG+G M Y  ATFC             ++ GE +G           G FEG++  G+P G+G W ++ SGV +DCTFE+GY+  I
Sbjct:   75 PPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTA-EGERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAERED-EASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXXKIDFGEKSGFS--------SGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKI 407
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig864.20020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI3.240e-2151.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig864contigF-serratus_M_contig864:337182..338129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D7G4Q6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size948
Cds size948
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932534.1058385-CDS-F-serratus_M_contig864:337181..3381291622932534.1058385-CDS-F-serratus_M_contig864:337181..338129Fucus serratus maleCDSF-serratus_M_contig864 337182..338129 +
1690964353.6151288-CDS-F-serratus_M_contig864:337181..3381291690964353.6151288-CDS-F-serratus_M_contig864:337181..338129Fucus serratus maleCDSF-serratus_M_contig864 337182..338129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig864.20020.1prot_F-serratus_M_contig864.20020.1Fucus serratus malepolypeptideF-serratus_M_contig864 337182..338129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig864.20020.1

>prot_F-serratus_M_contig864.20020.1 ID=prot_F-serratus_M_contig864.20020.1|Name=mRNA_F-serratus_M_contig864.20020.1|organism=Fucus serratus male|type=polypeptide|length=316bp
PSVPAGLRRFLEQHRPSQPEIANGSTGPQRPPSRVSFKSGQVYEGQLRRH
GAMPFGWGRVTLAEGATYEGEWSGGRVHGKGTLRLPNGNAYWGSWALGRK
HGLGTFVWADGSRHDGNYRAGMKSGFGTLHYASGAVFEGQFEADRRHGIG
RLELPEGSSYVGEWERDVPHGFGVFVDAAGGGERYEGSWKRGVRSGGGRL
IQGWAEGGQGGENLPDLASSVSTDRFKDLAWYSGNFKDGLPHGEGAMGYG
LATFCGHVERGEWTGGRGVLDLGGGRGSFEGTFSKGLPRGNGSWRWENSG
VEMDCTFEEGYTSSI*
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mRNA from alignment at F-serratus_M_contig864:337182..338129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig864.20020.1 ID=mRNA_F-serratus_M_contig864.20020.1|Name=mRNA_F-serratus_M_contig864.20020.1|organism=Fucus serratus male|type=mRNA|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig864:337182..338129+ (Fucus serratus male)
CCATCCGTTCCAGCCGGGCTGCGGCGCTTCCTCGAACAGCACCGACCCTC
ACAGCCCGAAATCGCGAACGGCAGCACCGGTCCGCAGCGGCCACCATCCC
GAGTCAGCTTCAAGTCTGGGCAAGTTTACGAGGGTCAGCTCCGCCGTCAC
GGTGCTATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGGCTAC
GTACGAGGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACCCTCC
GTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCGCAAA
CATGGACTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACGGTAA
CTACAGGGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCTAGCG
GCGCCGTTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCATCGGC
CGCCTCGAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAAGAGA
CGTCCCTCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGGGAGC
GGTACGAGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCGGCTT
ATACAGGGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGGACCT
CGCATCGTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTACTCCG
GCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTACGGT
CTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTGGAAG
GGGGGTGCTCGATCTAGGTGGTGGGAGGGGAAGCTTTGAGGGGACGTTCA
GCAAAGGCCTTCCGAGGGGCAACGGAAGTTGGCGCTGGGAAAACTCCGGT
GTCGAGATGGATTGTACCTTCGAGGAGGGCTACACCTCGAGTATCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig864:337182..338129+

>mRNA_F-serratus_M_contig864.20020.1 ID=mRNA_F-serratus_M_contig864.20020.1|Name=mRNA_F-serratus_M_contig864.20020.1|organism=Fucus serratus male|type=CDS|length=1896bp|location=Sequence derived from alignment at F-serratus_M_contig864:337182..338129+ (Fucus serratus male)
CCATCCGTTCCAGCCGGGCTGCGGCGCTTCCTCGAACAGCACCGACCCTC
ACAGCCCGAAATCGCGAACGGCAGCACCGGTCCGCAGCGGCCACCATCCC
GAGTCAGCTTCAAGTCTGGGCAAGTTTACGAGGGTCAGCTCCGCCGTCAC
GGTGCTATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGGCTAC
GTACGAGGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACCCTCC
GTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCGCAAA
CATGGACTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACGGTAA
CTACAGGGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCTAGCG
GCGCCGTTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCATCGGC
CGCCTCGAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAAGAGA
CGTCCCTCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGGGAGC
GGTACGAGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCGGCTT
ATACAGGGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGGACCT
CGCATCGTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTACTCCG
GCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTACGGT
CTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTGGAAG
GGGGGTGCTCGATCTAGGTGGTGGGAGGGGAAGCTTTGAGGGGACGTTCA
GCAAAGGCCTTCCGAGGGGCAACGGAAGTTGGCGCTGGGAAAACTCCGGT
GTCGAGATGGATTGTACCTTCGAGGAGGGCTACACCTCGAGTATCTGACC
ATCCGTTCCAGCCGGGCTGCGGCGCTTCCTCGAACAGCACCGACCCTCAC
AGCCCGAAATCGCGAACGGCAGCACCGGTCCGCAGCGGCCACCATCCCGA
GTCAGCTTCAAGTCTGGGCAAGTTTACGAGGGTCAGCTCCGCCGTCACGG
TGCTATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGGCTACGT
ACGAGGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACCCTCCGT
CTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCGCAAACA
TGGACTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACGGTAACT
ACAGGGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCTAGCGGC
GCCGTTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCATCGGCCG
CCTCGAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAAGAGACG
TCCCTCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGGGAGCGG
TACGAGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCGGCTTAT
ACAGGGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGGACCTCG
CATCGTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTACTCCGGC
AACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTACGGTCT
CGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTGGAAGGG
GGGTGCTCGATCTAGGTGGTGGGAGGGGAAGCTTTGAGGGGACGTTCAGC
AAAGGCCTTCCGAGGGGCAACGGAAGTTGGCGCTGGGAAAACTCCGGTGT
CGAGATGGATTGTACCTTCGAGGAGGGCTACACCTCGAGTATCTGA
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