mRNA_F-serratus_M_contig849.19885.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig849.19885.1
Unique NamemRNA_F-serratus_M_contig849.19885.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig849.19885.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.130e-17
Identity = 70/141 (49.65%), Postives = 85/141 (60.28%), Query Frame = 1 
Query:    1 AKYDKAKGRIAALEELVAASRRVSARARKEFQGALDALKLSQKMLLKIHGQHQGDGRNAVDSPPTLSNACT--ASSP-------PTAASTQEG--------QAAPAGCS---------------STDAHVRELAVQASRLR 327
            AKY+KAKGRI ALEELVAASRRVSA+AR+EF+GAL+ALKLSQ++LL+IH Q Q    NAV  P   +   T  A++P       P AA+ +           AAPA  +               STDAHV ELA QAS+LR
Sbjct: 1405 AKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQN---NAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLR 1542
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig849.19885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI1.130e-1749.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig849contigF-serratus_M_contig849:329549..330226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002080.1
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932500.4776592-CDS-F-serratus_M_contig849:329548..3297791622932500.4776592-CDS-F-serratus_M_contig849:329548..329779Fucus serratus maleCDSF-serratus_M_contig849 329549..329779 -
1690964338.7731369-CDS-F-serratus_M_contig849:329548..3297791690964338.7731369-CDS-F-serratus_M_contig849:329548..329779Fucus serratus maleCDSF-serratus_M_contig849 329549..329779 -
1622932500.4941998-CDS-F-serratus_M_contig849:330130..3302261622932500.4941998-CDS-F-serratus_M_contig849:330130..330226Fucus serratus maleCDSF-serratus_M_contig849 330131..330226 -
1690964338.7849238-CDS-F-serratus_M_contig849:330130..3302261690964338.7849238-CDS-F-serratus_M_contig849:330130..330226Fucus serratus maleCDSF-serratus_M_contig849 330131..330226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig849.19885.1prot_F-serratus_M_contig849.19885.1Fucus serratus malepolypeptideF-serratus_M_contig849 329549..330226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig849.19885.1

>prot_F-serratus_M_contig849.19885.1 ID=prot_F-serratus_M_contig849.19885.1|Name=mRNA_F-serratus_M_contig849.19885.1|organism=Fucus serratus male|type=polypeptide|length=109bp
AKYDKAKGRIAALEELVAASRRVSARARKEFQGALDALKLSQKMLLKIHG
QHQGDGRNAVDSPPTLSNACTASSPPTAASTQEGQAAPAGCSSTDAHVRE
LAVQASRLR
back to top

mRNA from alignment at F-serratus_M_contig849:329549..330226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig849.19885.1 ID=mRNA_F-serratus_M_contig849.19885.1|Name=mRNA_F-serratus_M_contig849.19885.1|organism=Fucus serratus male|type=mRNA|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig849:329549..330226- (Fucus serratus male)
GCCAAGTATGATAAGGCGAAAGGTCGTATTGCAGCGCTGGAAGAGTTGGT
GGCGGCCTCGCGTCGGGTCAGTGCACGAGCTCGTAAAGAGTTCCAGGTAA
GCAGGAAGCAACGGTACGCATTGGTCGCGGGTGAAGGCGTGGAATTTGTA
CAATTTTCATCTGTGAAGTCCCCGCTGTTTTTTGTTGGTCAAGATGAAGT
ATGACGGCGAGGAAAAACGCGAGTCGGCGACTATCCTTCGAGGTACTTAC
TTCTGAGCGACATTTTTCCAGTCGCATTTTTCTTGATGGTCACCACCGTC
GTTGAATCAGGATGTTTGACACGGCGAGTTTCGGGGGGGGGAAATGACTC
TAGTGCCAAGGATATCGGACACACCGCGAACAGGACTCGATTGCGCCCAC
TTTCGAACCGCTTACATTGCCTGGGCGTCTTCTCTTTCGGCTGACAGGGT
GCTCTCGATGCGCTCAAGCTGTCTCAGAAGATGCTTCTGAAAATCCACGG
GCAGCACCAGGGCGATGGACGCAACGCCGTCGACAGCCCGCCCACGCTAT
CTAACGCATGCACTGCCTCCTCGCCGCCGACAGCAGCTAGTACGCAGGAA
GGCCAAGCAGCCCCGGCGGGCTGCTCATCGACCGATGCTCACGTGCGCGA
GCTGGCGGTCCAGGCGTCGAGATTGCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig849:329549..330226-

>mRNA_F-serratus_M_contig849.19885.1 ID=mRNA_F-serratus_M_contig849.19885.1|Name=mRNA_F-serratus_M_contig849.19885.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig849:329549..330226- (Fucus serratus male)
GCCAAGTATGATAAGGCGAAAGGTCGTATTGCAGCGCTGGAAGAGTTGGT
GGCGGCCTCGCGTCGGGTCAGTGCACGAGCTCGTAAAGAGTTCCAGGCCA
AGTATGATAAGGCGAAAGGTCGTATTGCAGCGCTGGAAGAGTTGGTGGCG
GCCTCGCGTCGGGTCAGTGCACGAGCTCGTAAAGAGTTCCAGGGTGCTCT
CGATGCGCTCAAGCTGTCTCAGAAGATGCTTCTGAAAATCCACGGGCAGC
ACCAGGGCGATGGACGCAACGCCGTCGACAGCCCGCCCACGCTATCTAAC
GCATGCACTGCCTCCTCGCCGCCGACAGCAGCTAGTACGCAGGAAGGCCA
AGCAGCCCCGGCGGGCTGCTCATCGACCGATGCTCACGTGCGCGAGCTGG
CGGTCCAGGCGTCGAGATTGCGAGGTGCTCTCGATGCGCTCAAGCTGTCT
CAGAAGATGCTTCTGAAAATCCACGGGCAGCACCAGGGCGATGGACGCAA
CGCCGTCGACAGCCCGCCCACGCTATCTAACGCATGCACTGCCTCCTCGC
CGCCGACAGCAGCTAGTACGCAGGAAGGCCAAGCAGCCCCGGCGGGCTGC
TCATCGACCGATGCTCACGTGCGCGAGCTGGCGGTCCAGGCGTCGAGATT
GCGA
back to top