mRNA_F-serratus_M_contig8486.19877.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8486.19877.1
Unique NamemRNA_F-serratus_M_contig8486.19877.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8486.19877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8486contigF-serratus_M_contig8486:5570..6058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8486.19877.1prot_F-serratus_M_contig8486.19877.1Fucus serratus malepolypeptideF-serratus_M_contig8486 5599..6031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.0040283-UTR-F-serratus_M_contig8486:5569..55981622932499.0040283-UTR-F-serratus_M_contig8486:5569..5598Fucus serratus maleUTRF-serratus_M_contig8486 5570..5598 -
1690964338.023868-UTR-F-serratus_M_contig8486:5569..55981690964338.023868-UTR-F-serratus_M_contig8486:5569..5598Fucus serratus maleUTRF-serratus_M_contig8486 5570..5598 -
1622932499.0641212-UTR-F-serratus_M_contig8486:6031..60581622932499.0641212-UTR-F-serratus_M_contig8486:6031..6058Fucus serratus maleUTRF-serratus_M_contig8486 6032..6058 -
1690964338.067412-UTR-F-serratus_M_contig8486:6031..60581690964338.067412-UTR-F-serratus_M_contig8486:6031..6058Fucus serratus maleUTRF-serratus_M_contig8486 6032..6058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.0246716-CDS-F-serratus_M_contig8486:5598..56521622932499.0246716-CDS-F-serratus_M_contig8486:5598..5652Fucus serratus maleCDSF-serratus_M_contig8486 5599..5652 -
1690964338.0438101-CDS-F-serratus_M_contig8486:5598..56521690964338.0438101-CDS-F-serratus_M_contig8486:5598..5652Fucus serratus maleCDSF-serratus_M_contig8486 5599..5652 -
1622932499.0440311-CDS-F-serratus_M_contig8486:5974..60311622932499.0440311-CDS-F-serratus_M_contig8486:5974..6031Fucus serratus maleCDSF-serratus_M_contig8486 5975..6031 -
1690964338.0578475-CDS-F-serratus_M_contig8486:5974..60311690964338.0578475-CDS-F-serratus_M_contig8486:5974..6031Fucus serratus maleCDSF-serratus_M_contig8486 5975..6031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8486.19877.1

>prot_F-serratus_M_contig8486.19877.1 ID=prot_F-serratus_M_contig8486.19877.1|Name=mRNA_F-serratus_M_contig8486.19877.1|organism=Fucus serratus male|type=polypeptide|length=37bp
MAGVFEGMDPLTFKGDVSATIISKIESRPIRIVQPA*
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mRNA from alignment at F-serratus_M_contig8486:5570..6058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8486.19877.1 ID=mRNA_F-serratus_M_contig8486.19877.1|Name=mRNA_F-serratus_M_contig8486.19877.1|organism=Fucus serratus male|type=mRNA|length=489bp|location=Sequence derived from alignment at F-serratus_M_contig8486:5570..6058- (Fucus serratus male)
CACAGCCCGCGATACTCTGGTTTGAAGATGGCTGGCGTGTTCGAGGGCAT
GGACCCATTGACTTTCAAGGGTGATGTCTCCGCGGTGGGAAATGCCCCTC
CGTTCAAACGAAAAGCGATCGACAAAAGAATGGATCCGGCTTATAAGGCT
TCGCTACAACGCGATGCACTTCGAGAGTTAACGCTATCTTCCCGTGCGCT
GCGTCGCATTCCAAAATTTAACCAAATAGAATTATTTACTTACAAGTTCA
AAATTTGACAAAATCAATTCTATTGACACCATCTATAATGGTGTGTACGT
CGAATAAGGTACCCATGTACAGCTACTTTAAAACACTTGGGGGTTAAGTC
CTCCCGACGGAATATTGAGCGCGTGCAATTTATCTGCCCGGCTGATTTCC
CTCCAGACAATAATTTCCAAGATCGAATCGAGGCCGATACGGATTGTTCA
GCCTGCCTAACGGGCGCGAGCGGGTCGTCCTACTTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8486:5570..6058-

>mRNA_F-serratus_M_contig8486.19877.1 ID=mRNA_F-serratus_M_contig8486.19877.1|Name=mRNA_F-serratus_M_contig8486.19877.1|organism=Fucus serratus male|type=CDS|length=222bp|location=Sequence derived from alignment at F-serratus_M_contig8486:5570..6058- (Fucus serratus male)
ATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGGGTGATGT
CTCCGCGATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGG
GTGATGTCTCCGCGACAATAATTTCCAAGATCGAATCGAGGCCGATACGG
ATTGTTCAGCCTGCCTAAACAATAATTTCCAAGATCGAATCGAGGCCGAT
ACGGATTGTTCAGCCTGCCTAA
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