mRNA_F-serratus_M_contig848.19875.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig848.19875.1
Unique NamemRNA_F-serratus_M_contig848.19875.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig848.19875.1 vs. uniprot
Match: UPI0019D64B3C (uncharacterized protein LOC120651961 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D64B3C)

HSP 1 Score: 54.7 bits (130), Expect = 2.080e-5
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  158 LLQGSNDDKLGKYDVNNAATEFACSRYQILRVWKRYKQQKADGVDIDLRNRRFQNSGRKGMDTEKILEILETVPL 382
            LL+ SN  KL K   N  A  F  SRYQ+  VW+R KQ +A G  +D+R+RR +N GR+ + T+ +L++L  VPL
Sbjct:  199 LLERSNRGKLKKNSTNIVAQLFQVSRYQVRAVWRRVKQCRAQGRQVDVRSRR-KNCGRERIQTD-LLDVLR-VPL 270
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019D64B3C2.080e-545.33uncharacterized protein LOC120651961 n=1 Tax=Panic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:343089..343678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19875.1prot_F-serratus_M_contig848.19875.1Fucus serratus malepolypeptideF-serratus_M_contig848 343174..343677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932496.2918894-UTR-F-serratus_M_contig848:343088..3431731622932496.2918894-UTR-F-serratus_M_contig848:343088..343173Fucus serratus maleUTRF-serratus_M_contig848 343089..343173 +
1690964336.670614-UTR-F-serratus_M_contig848:343088..3431731690964336.670614-UTR-F-serratus_M_contig848:343088..343173Fucus serratus maleUTRF-serratus_M_contig848 343089..343173 +
1622932496.3784258-UTR-F-serratus_M_contig848:343677..3436781622932496.3784258-UTR-F-serratus_M_contig848:343677..343678Fucus serratus maleUTRF-serratus_M_contig848 343678..343678 +
1690964336.6892362-UTR-F-serratus_M_contig848:343677..3436781690964336.6892362-UTR-F-serratus_M_contig848:343677..343678Fucus serratus maleUTRF-serratus_M_contig848 343678..343678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932496.3352008-CDS-F-serratus_M_contig848:343173..3436771622932496.3352008-CDS-F-serratus_M_contig848:343173..343677Fucus serratus maleCDSF-serratus_M_contig848 343174..343677 +
1690964336.6804535-CDS-F-serratus_M_contig848:343173..3436771690964336.6804535-CDS-F-serratus_M_contig848:343173..343677Fucus serratus maleCDSF-serratus_M_contig848 343174..343677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig848.19875.1

>prot_F-serratus_M_contig848.19875.1 ID=prot_F-serratus_M_contig848.19875.1|Name=mRNA_F-serratus_M_contig848.19875.1|organism=Fucus serratus male|type=polypeptide|length=168bp
MPVSGSAREIVPRNNLNEKQKSMPLLQGSNDDKLGKYDVNNAATEFACSR
YQILRVWKRYKQQKADGVDIDLRNRRFQNSGRKGMDTEKILEILETVPLK
YVPSTKKSFVPKKIIFASFRLYLNRAYIYCFTNRAYNRCRTYCAPLSQLL
YKYWLCSLALNTAVALV*
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mRNA from alignment at F-serratus_M_contig848:343089..343678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig848.19875.1 ID=mRNA_F-serratus_M_contig848.19875.1|Name=mRNA_F-serratus_M_contig848.19875.1|organism=Fucus serratus male|type=mRNA|length=590bp|location=Sequence derived from alignment at F-serratus_M_contig848:343089..343678+ (Fucus serratus male)
CTTCGCTCGTGCCACCCCACCCACCAGCAAACCGAGCTCCCGCGCGGCGA
TCACCGGTTGAAGCACTTCTCATCTTGTGTGTGAGATGCCAGTTTCTGGA
AGTGCTCGGGAGATAGTGCCGCGCAATAATCTGAACGAAAAACAAAAATC
GATGCCTCTACTGCAAGGCAGCAATGATGACAAACTCGGCAAGTACGACG
TGAACAACGCGGCCACAGAGTTTGCATGCTCCCGGTACCAGATCCTGCGC
GTGTGGAAGCGCTACAAGCAGCAGAAGGCTGACGGTGTCGACATCGACCT
CCGCAACAGGCGGTTCCAGAATTCTGGCCGCAAAGGCATGGACACGGAGA
AGATACTCGAGATCCTTGAGACCGTGCCGCTGAAATATGTACCAAGTACA
AAAAAATCGTTTGTACCAAAAAAAATCATTTTCGCCTCATTTCGGCTGTA
CTTGAATCGAGCTTATATTTATTGTTTTACAAATCGAGCTTATAATCGTT
GTCGGACGTACTGCGCACCACTGAGTCAACTTCTGTACAAATACTGGCTG
TGTAGTCTAGCGTTAAATACTGCTGTGGCTCTAGTCTAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig848:343089..343678+

>mRNA_F-serratus_M_contig848.19875.1 ID=mRNA_F-serratus_M_contig848.19875.1|Name=mRNA_F-serratus_M_contig848.19875.1|organism=Fucus serratus male|type=CDS|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig848:343089..343678+ (Fucus serratus male)
ATGCCAGTTTCTGGAAGTGCTCGGGAGATAGTGCCGCGCAATAATCTGAA
CGAAAAACAAAAATCGATGCCTCTACTGCAAGGCAGCAATGATGACAAAC
TCGGCAAGTACGACGTGAACAACGCGGCCACAGAGTTTGCATGCTCCCGG
TACCAGATCCTGCGCGTGTGGAAGCGCTACAAGCAGCAGAAGGCTGACGG
TGTCGACATCGACCTCCGCAACAGGCGGTTCCAGAATTCTGGCCGCAAAG
GCATGGACACGGAGAAGATACTCGAGATCCTTGAGACCGTGCCGCTGAAA
TATGTACCAAGTACAAAAAAATCGTTTGTACCAAAAAAAATCATTTTCGC
CTCATTTCGGCTGTACTTGAATCGAGCTTATATTTATTGTTTTACAAATC
GAGCTTATAATCGTTGTCGGACGTACTGCGCACCACTGAGTCAACTTCTG
TACAAATACTGGCTGTGTAGTCTAGCGTTAAATACTGCTGTGGCTCTAGT
CTAAATGCCAGTTTCTGGAAGTGCTCGGGAGATAGTGCCGCGCAATAATC
TGAACGAAAAACAAAAATCGATGCCTCTACTGCAAGGCAGCAATGATGAC
AAACTCGGCAAGTACGACGTGAACAACGCGGCCACAGAGTTTGCATGCTC
CCGGTACCAGATCCTGCGCGTGTGGAAGCGCTACAAGCAGCAGAAGGCTG
ACGGTGTCGACATCGACCTCCGCAACAGGCGGTTCCAGAATTCTGGCCGC
AAAGGCATGGACACGGAGAAGATACTCGAGATCCTTGAGACCGTGCCGCT
GAAATATGTACCAAGTACAAAAAAATCGTTTGTACCAAAAAAAATCATTT
TCGCCTCATTTCGGCTGTACTTGAATCGAGCTTATATTTATTGTTTTACA
AATCGAGCTTATAATCGTTGTCGGACGTACTGCGCACCACTGAGTCAACT
TCTGTACAAATACTGGCTGTGTAGTCTAGCGTTAAATACTGCTGTGGCTC
TAGTCTAA
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