mRNA_F-serratus_M_contig845.19823.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig845.19823.1
Unique NamemRNA_F-serratus_M_contig845.19823.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig845.19823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig845contigF-serratus_M_contig845:136514..141112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1016
Cds size831
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932488.0220869-CDS-F-serratus_M_contig845:136513..1366271622932488.0220869-CDS-F-serratus_M_contig845:136513..136627Fucus serratus maleCDSF-serratus_M_contig845 136514..136627 -
1690964333.1233723-CDS-F-serratus_M_contig845:136513..1366271690964333.1233723-CDS-F-serratus_M_contig845:136513..136627Fucus serratus maleCDSF-serratus_M_contig845 136514..136627 -
1622932488.0450046-CDS-F-serratus_M_contig845:137069..1371711622932488.0450046-CDS-F-serratus_M_contig845:137069..137171Fucus serratus maleCDSF-serratus_M_contig845 137070..137171 -
1690964333.1337063-CDS-F-serratus_M_contig845:137069..1371711690964333.1337063-CDS-F-serratus_M_contig845:137069..137171Fucus serratus maleCDSF-serratus_M_contig845 137070..137171 -
1622932488.0673127-CDS-F-serratus_M_contig845:137387..1375031622932488.0673127-CDS-F-serratus_M_contig845:137387..137503Fucus serratus maleCDSF-serratus_M_contig845 137388..137503 -
1690964333.1445036-CDS-F-serratus_M_contig845:137387..1375031690964333.1445036-CDS-F-serratus_M_contig845:137387..137503Fucus serratus maleCDSF-serratus_M_contig845 137388..137503 -
1622932488.0875978-CDS-F-serratus_M_contig845:137831..1379831622932488.0875978-CDS-F-serratus_M_contig845:137831..137983Fucus serratus maleCDSF-serratus_M_contig845 137832..137983 -
1690964333.1546495-CDS-F-serratus_M_contig845:137831..1379831690964333.1546495-CDS-F-serratus_M_contig845:137831..137983Fucus serratus maleCDSF-serratus_M_contig845 137832..137983 -
1622932488.1070158-CDS-F-serratus_M_contig845:138347..1384761622932488.1070158-CDS-F-serratus_M_contig845:138347..138476Fucus serratus maleCDSF-serratus_M_contig845 138348..138476 -
1690964333.1717162-CDS-F-serratus_M_contig845:138347..1384761690964333.1717162-CDS-F-serratus_M_contig845:138347..138476Fucus serratus maleCDSF-serratus_M_contig845 138348..138476 -
1622932488.1243703-CDS-F-serratus_M_contig845:139992..1402101622932488.1243703-CDS-F-serratus_M_contig845:139992..140210Fucus serratus maleCDSF-serratus_M_contig845 139993..140210 -
1690964333.1830761-CDS-F-serratus_M_contig845:139992..1402101690964333.1830761-CDS-F-serratus_M_contig845:139992..140210Fucus serratus maleCDSF-serratus_M_contig845 139993..140210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932488.1427794-UTR-F-serratus_M_contig845:140927..1411121622932488.1427794-UTR-F-serratus_M_contig845:140927..141112Fucus serratus maleUTRF-serratus_M_contig845 140928..141112 -
1690964333.1924222-UTR-F-serratus_M_contig845:140927..1411121690964333.1924222-UTR-F-serratus_M_contig845:140927..141112Fucus serratus maleUTRF-serratus_M_contig845 140928..141112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig845.19823.1prot_F-serratus_M_contig845.19823.1Fucus serratus malepolypeptideF-serratus_M_contig845 136514..140210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig845.19823.1

>prot_F-serratus_M_contig845.19823.1 ID=prot_F-serratus_M_contig845.19823.1|Name=mRNA_F-serratus_M_contig845.19823.1|organism=Fucus serratus male|type=polypeptide|length=277bp
MENTTRNDSGNELIKNQSPPLTGAPSSGAKSRTKTYPRPNTRHKKRSKKA
ASPSDSASPGTTWKPQQVKRCALQTLGGSTSNSSPAPLKGNLKFKRSSEA
TLRKMKSYGGRMFFDKCYLSSEDEKQHVRTAWTLSPSDGEESEPPRSTKD
VAAASSSSKKGVMGTKVGDGKRATRRANSENPFAIPSVAEEDSCDSNIDS
AEEDESEWMDTKASKDMCKPVHHQVHQAIAPKQRGEQRKATSTPGKGGKR
PNRNKGENLADTCQGGTSKSTPSVTKS
back to top

mRNA from alignment at F-serratus_M_contig845:136514..141112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig845.19823.1 ID=mRNA_F-serratus_M_contig845.19823.1|Name=mRNA_F-serratus_M_contig845.19823.1|organism=Fucus serratus male|type=mRNA|length=4599bp|location=Sequence derived from alignment at F-serratus_M_contig845:136514..141112- (Fucus serratus male)
GGAGCCTCCTACACGCCAGACTCATTTTCATTGCTCTTGAGTTGGTCACC
ATTGAACGATCGACCTCTCGCGCTCAACTCTGACGACTTCTCTGAGCATC
CGGAGCCTTTAGAATAAGGTTTGCCTTCAAAATCCGCTCAAGGCTGACAA
CAGACTCTCTTCTCTGACCATCCGGAACCTTTCGAGTAAGGTTTGAATTC
AAAATCCGAATTTGCAACTTTGATTTTGAGAAAACCTCCCGTTTTCAAAC
ATTCAACTACAACAAGCTTGAACAGACCTGGTCCTTTGTTAGGTCAAAGG
ACGAAGGAGGAGGTGGTGCAGAGCAACCCGTCGCCCCGACGGTCTGCTTG
GACCCTGTGACACAGCATCATCTTTCATGCCGATAGAAGCACATTTTTTT
AGTTTGGTCGATTGGAACCTGTGTATAACTGTCGGAACTCTTCAAGACGA
AGGCATTCTCCCAATAGCCCATGAGTAGTAGTGTACGAATACTCGTAACT
ATTTTACTTTGGAAATGCAAAATACTCGTGCGCAACCGTATACAATGAGC
TTCGTACTGTAGTTCGCAATGGCTGACATATAGGTCCTCATGGCCCATCC
TACCTGAAGCGTAGACCGTCTCCTCGGAGAGACCATCATAGTGGATGGAA
GCCAATCCGCTTTGTTGACGGAAGATGGCATGACAACGACCTAATTTCGT
CTCCGTCGCGTGCTTGACGTGCAGTTTCAGGATTCGTCGGGTGAACCAAA
GGTTCAGTCAACTACTTGTACCGGTAGTCTTTATTCAGCCGGTTGATTGT
GACCGCTCCGACTCAAAAGCAGCGTCTAAGCTGCTATCTCGCTGGCACGT
GGTACTAATGTAAGTACTATGTATTTGACGCTGTCCATATTTTGTGGTAA
AGATGGAGAACACAACAAGAAATGACTCGGGCAACGAGTTGATCAAGAAC
CAGAGCCCGCCGCTGACAGGCGCGCCTTCTAGCGGGGCCAAGAGCCGAAC
CAAGACTTACCCTCGGCCAAACACACGCCACAAGAAACGGAGCAAGAAAG
CTGCGTCACCTTCCGACAGTGCCTCGCCGGGGACGACGTGGAAGCCTCAA
CAGGTCAAGCGATGCGCTCTGTGAGTAGTGAACACTTGTGATCACACACT
TTTGTACATGGTAGTAAGTCATCGATTGTTTGTTTTTTCAGACAGCAAAC
AAAGTAGCTCTATGGCTCTAGGGCTCCTCGATATAGTAGCTCTATACTCA
GTATCTAATTATTGTAGCTAATAATACCTATTATTATAGTAGCTGCGAGA
CAGAAATATGTTTGTGTAGCATTTTAGTGCGCACAACCTAATAATGAATA
ATACTGTTTAAAGAAAACCCAGAACGCGCCTATACCTTCTGAGCATCCTC
CAGTCAGAAGAAAAATGTTGTTGAAGCACGTACGGCATATTGATGCGATG
CGTTAGGACTCCGTTCAGGGACATGGGACACCAGCACAGCGGGCGCGGGG
AACGACCCTTAGGACAATCAAGCTAGTGTTTGGAGCGTTTTTCTGCTGCC
GACCTTCCTCTGGTTTCGGTCAGCGTTCCACATTCATTCCCAATGCATTG
TTTCGTGTGTTGTCCTATCTAGCCTTCCTCGTGTTATACGCGTACCCGTT
CCCGCATTCTCCGTCTGTTCCTTCTCTGTTGGCAAATACCTGGTAATACA
GTAGTAGTCCTTTGACGTCGCATTTTGACCGTTCTCAACCAACAGACAGC
GGAGACGGTGCATGACAGAGAAATGGGCAAAAAACTATCCTGGTAGAGGT
GATGGGTGACAACCCGCCACGTCTCTCGCGACAGACTCACTCGTTGGATA
CCCTGTTTGATAGGCAACAGAATGGTGACTACCTGTTACAGTAGATAGAT
ACCGTGAGGGGCACCAGAGAAATCTCGTGAAAGGCAATAATTATACATTT
TGCCCTATAGCCAGAAGGTCTAACGCTCCTACAGGGAGTGGTTTTTGTCA
CATCTAGAGCTGGTCCTCAACAACAACAGGTGTGTTTGTACGTAAGGGAG
AGGAAGGATGTGGTCTTAAAACGCAGTCGAGCTGGCCACGGCTAGAATAA
TACTAAATCTCGATCCAAAAGAACGCGCACACGTACATTTCTGTTGAGAT
ACCCGATCATCGTACTTTGTTGAAGAGATACAACAGCACCACAGCCGCGG
GTATACTTTGGTAGCAAAGGCCCAAGCACGCATGCGTGTGCAAGGACACG
GAAGTACCAGCGTCGGACCATAATTATAGATCCACGATAGAAACATTTTG
TTTTCAATTACGTCGAGTTTACAGTAAGTAGGAGTGGTTTATAGCCTCAT
ACTATCATCATTGGATTCGTCGGGCCTTGAAACGAGCCTTGTACTCGTGT
ATAGGATGTAGAGGTGATGTACAGCTGTATGTACCTAGATGACGTAAAGG
AACGACGATCCTAGACTGCACATGAACACCTGGACAACCGGCACCCAATG
GTAGCAATGAGGTTACGGTTGCAAAGGGCGCATTACTTTGCTCCAATTCT
TGGGTCAAGGTCCGTAGGATTTAAAAGAACGTAATAATTCGCCTTTTTGT
TGTTGGACCGTTCGCGGCGCCCCTCTTGGGCCCCAGGCAGACACTAGGTG
GTTCAACGAGCAACTCTTCGCCGGCACCATTAAAGGGGAACCTCAAGTTC
AAGAGAAGCAGCGAAGCTACTCTACGCAAGATGAAATCATACGGGGGCAG
GATGTTCTTTGACAAGTGAGAGACATCTACTGAAGAATCAGATGATGAAT
CTCTGATCTGATCGTTGGTACAGGAGTTTCAGCCTGTAACGGCAGCTTAA
TAGTTGAACGCCTGTTTGGACGCTCCTGGCTCAAGCTGCCCTACTTCATG
CGCATATAATAAAATGTACGCGAAAACGCGTGAAAAGCGCCATAGGTCAG
CGTGGCGATAGAGAATCGGGCTGTTAAGATTATTATCACTCATGTGTTAT
AGAGCAGCTTGTGGATGCCGTCCGGCTTCGTCAGACATGATGCCACTTGC
TGCACTCTCGCAGTCTCACCTGCGATATTGGGACCATTTGATCGATCTCG
ACTATTATTACTGCCTCGGATTAAAAAAGGTGTTATCTCAGCAGCGAGGA
CGAAAAGCAACATGTCCGGACTGCTTGGACGCTATCTCCTTCTGATGGAG
AAGAAAGCGAGCCCCCCCGTTCCACCAAAGACGTTGCCGCGGCTTCCTCT
AGCTCTAAGAAGGGCGTCATGGGCACCAAAGGTGTCGATACCTGTAGGTC
GAAGTACACCCTATCAAGGAACACCTTCGTCGATCCACCTCCTTCACTCT
CGAGATACACAGGGCCTAAACATTATTTTGAAAACTCGTCTACTTTCTTC
CGCAGTATGGAGACAAATGTTGTTGTCGTTGTTGTTGTTTTTCATCAAAA
GTGATTTTCGGGGCTCAAGGAGAGGAAAGGAGGGAGGAGCATCGTCTGCC
GAACTTGATACTGGGTATTAGTGACACTCCACCACTATCCATGTCATAGT
CTAGAGCTCATCTGTTTTGTGGATCCTCGATTTATATTTGTTTCTGTGTA
TCCAAGTAGTAGGTGATGGAAAGAGGGCAACCAGGAGAGCAAACAGCGAA
AATCCGTTCGCAATACCCTCCGTCGCTGAAGAGGACAGCTGCGACTCCAA
TATCGACTCTGCCGAGGAGGACGAGGCAAGAAAAATACAAATTATACTGT
ACCGAATTATCGAGGTGTCCTCACGGTCAATGGACTTCTACCTTGGAGTC
ATATGCGCCTATTGTTATAGGTTGTCGGCGTATACGCAGCAAGTTTTCCG
CTCCGCCCCCAAATATTGTACTACTAGTTCTATGTACTTGATATTCGTGC
AATCCCCCCATATATTTCTCGAATTTCTCTACACGCAAAAGTCAGAATGG
ATGGACACCAAGGCTTCCAAGGATATGTGCAAGCCTGTTCATCATCAGGT
TCATCAGGCCATTGCCCCAAAACAGAGGGGGGAACAACGAAAGGTACCTA
GACTACTGGCGGTCCTCCTTACAAAATATTGGTTCATAAACGGTTGAAGG
GGCAGTAGGGGGCGGAATTATTGTTCCGACCTAACAAGCTACACCCACTC
AACCGTATAATATTCCACTCACACTCCGTCAAAAGATGCGAATGGGGGAG
GAGCGTTATCGGTGGCAACGCCGTAGTGAGAGTCGGCCACAGTACAATGT
ATATCGTACCTTATAGACGTGGAATGCATACATTTTACAGACTTTGGTCG
CACGAGCCGCGTCTATACAAACAGCTCCGCTCTCTCACCCGAATCGATCC
AAAGCAAAAACTCTCAGGGTCACGAGCCAGCGCGGGTGAATCCGTTCGTT
GACTATGTTTTCTTCCTGGTATTCGACCGATCGATCCAGACACACCACAA
ATGGTAAATGTGCATTCACATGTGAACTATTTCAGGCCACCTCGACGCCA
GGCAAGGGGGGCAAGAGACCCAACCGCAACAAGGGGGAAAATCTTGCGGA
TACCTGCCAGGGGGGCACTTCAAAATCTACGCCTTCCGTCACAAAGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig845:136514..141112-

>mRNA_F-serratus_M_contig845.19823.1 ID=mRNA_F-serratus_M_contig845.19823.1|Name=mRNA_F-serratus_M_contig845.19823.1|organism=Fucus serratus male|type=CDS|length=1662bp|location=Sequence derived from alignment at F-serratus_M_contig845:136514..141112- (Fucus serratus male)
ATGGAGAACACAACAAGAAATGACTCGGGCAACGAGTTGATCAAGAACCA
GAGCCCGCCGCTGACAGGCGCGCCTTCTAGCGGGGCCAAGAGCCGAACCA
AGACTTACCCTCGGCCAAACACACGCCACAAGAAACGGAGCAAGAAAGCT
GCGTCACCTTCCGACAGTGCCTCGCCGGGGACGACGTGGAAGCCTCAACA
GGTCAAGCGATGCGCTCTATGGAGAACACAACAAGAAATGACTCGGGCAA
CGAGTTGATCAAGAACCAGAGCCCGCCGCTGACAGGCGCGCCTTCTAGCG
GGGCCAAGAGCCGAACCAAGACTTACCCTCGGCCAAACACACGCCACAAG
AAACGGAGCAAGAAAGCTGCGTCACCTTCCGACAGTGCCTCGCCGGGGAC
GACGTGGAAGCCTCAACAGGTCAAGCGATGCGCTCTGCAGACACTAGGTG
GTTCAACGAGCAACTCTTCGCCGGCACCATTAAAGGGGAACCTCAAGTTC
AAGAGAAGCAGCGAAGCTACTCTACGCAAGATGAAATCATACGGGGGCAG
GATGTTCTTTGACAAGCAGACACTAGGTGGTTCAACGAGCAACTCTTCGC
CGGCACCATTAAAGGGGAACCTCAAGTTCAAGAGAAGCAGCGAAGCTACT
CTACGCAAGATGAAATCATACGGGGGCAGGATGTTCTTTGACAAGTGTTA
TCTCAGCAGCGAGGACGAAAAGCAACATGTCCGGACTGCTTGGACGCTAT
CTCCTTCTGATGGAGAAGAAAGCGAGCCCCCCCGTTCCACCAAAGACGTT
GCCGCGGCTTCCTCTAGCTCTAAGAAGGGCGTCATGGGCACCAAAGGTGT
TATCTCAGCAGCGAGGACGAAAAGCAACATGTCCGGACTGCTTGGACGCT
ATCTCCTTCTGATGGAGAAGAAAGCGAGCCCCCCCGTTCCACCAAAGACG
TTGCCGCGGCTTCCTCTAGCTCTAAGAAGGGCGTCATGGGCACCAAAGTA
GGTGATGGAAAGAGGGCAACCAGGAGAGCAAACAGCGAAAATCCGTTCGC
AATACCCTCCGTCGCTGAAGAGGACAGCTGCGACTCCAATATCGACTCTG
CCGAGGAGGACGAGTAGGTGATGGAAAGAGGGCAACCAGGAGAGCAAACA
GCGAAAATCCGTTCGCAATACCCTCCGTCGCTGAAGAGGACAGCTGCGAC
TCCAATATCGACTCTGCCGAGGAGGACGAGTCAGAATGGATGGACACCAA
GGCTTCCAAGGATATGTGCAAGCCTGTTCATCATCAGGTTCATCAGGCCA
TTGCCCCAAAACAGAGGGGGGAACAACGAAAGTCAGAATGGATGGACACC
AAGGCTTCCAAGGATATGTGCAAGCCTGTTCATCATCAGGTTCATCAGGC
CATTGCCCCAAAACAGAGGGGGGAACAACGAAAGGCCACCTCGACGCCAG
GCAAGGGGGGCAAGAGACCCAACCGCAACAAGGGGGAAAATCTTGCGGAT
ACCTGCCAGGGGGGCACTTCAAAATCTACGCCTTCCGTCACAAAGAGCGC
CACCTCGACGCCAGGCAAGGGGGGCAAGAGACCCAACCGCAACAAGGGGG
AAAATCTTGCGGATACCTGCCAGGGGGGCACTTCAAAATCTACGCCTTCC
GTCACAAAGAGC
back to top