mRNA_F-serratus_M_contig814.19559.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig814.19559.1
Unique NamemRNA_F-serratus_M_contig814.19559.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: A0A7S2Y508_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y508_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.460e-31
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   34 AINTLMDLKGKISTQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            A+  L  L+ +IS  +DFA +A ++SDC SA+ GGDLG FG GQMMKPFEDATRAL++GEIS VVDTDSGVHIILRTG
Sbjct:   38 AVQILQTLRSQISGPEDFANLAAQHSDCSSARNGGDLGPFGPGQMMKPFEDATRALQIGEISGVVDTDSGVHIILRTG 115          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: A0A5J4WIS3_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WIS3_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 1.790e-28
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   70 STQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRT 264
            S ++DFAEIA++YSDCGSAK GGDLG FG GQMMKPFEDAT AL+VGE+S +V TDSGVHIILRT
Sbjct:   48 SGEKDFAEIARQYSDCGSAKNGGDLGPFGHGQMMKPFEDATYALKVGEMSGIVTTDSGVHIILRT 112          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: A0A5P1FT62_ASPOF (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FT62_ASPOF)

HSP 1 Score: 106 bits (265), Expect = 6.070e-28
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   19 TNQADAINTLMDLKGKIST-QQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            T +  A+  L  L+ KI++  + F ++A++YSDC SAK GGDLG FG GQM KPFE+AT AL+VGEIS++VDTDSGVHIILRTG
Sbjct:   36 TTKEAAVEQLKALREKIASGDEKFEDVAKKYSDCSSAKRGGDLGRFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIILRTG 119          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: UPI000900F076 (peptidyl-prolyl cis-trans isomerase Pin1-like isoform X2 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900F076)

HSP 1 Score: 107 bits (267), Expect = 7.440e-28
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 GHSHFRTNQADAINTLMDLKGK-ISTQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            GH+  +  + DA+  L  L+   +S + DF +IA  YSDC SAK GGDLG+FG GQM KPFE AT AL+VGEIS++VDTDSG HII+RTG
Sbjct:   62 GHAICKRTREDAVAQLKSLREDLVSGKADFKDIASRYSDCSSAKRGGDLGKFGRGQMQKPFEAATYALKVGEISDIVDTDSGSHIIMRTG 151          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: UPI000C1CE4A9 (peptidyl-prolyl cis-trans isomerase Pin1-like n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE4A9)

HSP 1 Score: 105 bits (263), Expect = 1.330e-27
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   19 TNQADAINTLMDLKGKI-STQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            T + DA++ L DL+  I S +  F+++A   SDC SAK GGDLG FG+GQM KPFE+AT AL+VGEIS++VDTDSGVHII+RTG
Sbjct:   39 TTRDDAVSQLKDLRVDIVSGKASFSDVASRDSDCSSAKRGGDLGSFGKGQMQKPFEEATYALKVGEISDIVDTDSGVHIIMRTG 122          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: A0A200QQU8_9MAGN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QQU8_9MAGN)

HSP 1 Score: 105 bits (262), Expect = 1.690e-27
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   19 TNQADAINTLMDLKGKIST-QQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            T +  AI  L  LK +I T +  F +IA  YSDC SAK GGDLG FG GQM KPFE+AT AL+VGEIS++VDTDSGVHII+RTG
Sbjct:   35 TTKESAIAQLKTLKEEIVTGKAKFEDIASRYSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVDTDSGVHIIMRTG 118          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: UPI001CC5AE1A (peptidyl-prolyl cis-trans isomerase Pin1 n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001CC5AE1A)

HSP 1 Score: 104 bits (260), Expect = 3.490e-27
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 GHSHFRTNQADAINTLMDLKGKI-STQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            G     T +  A++ L  L+  I +T+  F ++A  YSDC SAK GGDLG FG GQM KPFE+AT AL+VGEIS++VDTDSGVHII+RTG
Sbjct:   30 GRIIMNTTRDTAVSQLKTLRDDIVTTKAKFDDLASRYSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVDTDSGVHIIMRTG 119          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: K3YFS7_SETIT (Peptidyl-prolyl cis-trans isomerase n=10 Tax=Panicoideae TaxID=147369 RepID=K3YFS7_SETIT)

HSP 1 Score: 104 bits (260), Expect = 4.030e-27
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   19 TNQADAINTLMDLKGKI-STQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRT 264
            T +ADA   L+DL+ +I + Q +FA++A  +SDC SA+ GGDLG FG  QM KPFEDAT AL+VGE+S++VDTDSGVHIILRT
Sbjct:   41 TTRADAAARLLDLRNQILAGQANFADLAARHSDCSSARRGGDLGTFGRRQMQKPFEDATFALKVGELSDLVDTDSGVHIILRT 123          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: A0A834ZNB5_9MAGN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZNB5_9MAGN)

HSP 1 Score: 104 bits (259), Expect = 4.820e-27
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 GHSHFRTNQADAINTLMDLKGKIST-QQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG 267
            G     T +  A+  L  LK +I++    F +IA  YSDC SAK GGDLG FG GQM KPFE+AT AL+VGEIS+++DTDSGVHII+RTG
Sbjct:   29 GQVIMNTTRDSAVAQLKSLKEEIASGTAKFEDIASRYSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIMRTG 118          
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Match: J3LVA2_ORYBR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LVA2_ORYBR)

HSP 1 Score: 104 bits (259), Expect = 5.250e-27
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   19 TNQADAINTLMDLKGKI-STQQDFAEIAQEYSDCGSAKAGGDLGEFGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRT 264
            T++ADA   L + + +I S +  FA+IA  +SDC SA+ GGDLG FG GQM KPFEDAT ALRVGE S++VDTDSGVHIILRT
Sbjct:   38 TSRADAAARLAEFRDQILSGRASFADIAARHSDCSSARRGGDLGTFGRGQMQKPFEDATFALRVGETSDIVDTDSGVHIILRT 120          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig814.19559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y508_9STRA3.460e-3169.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
A0A5J4WIS3_9EUKA1.790e-2878.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=Strebl... [more]
A0A5P1FT62_ASPOF6.070e-2861.90Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aspara... [more]
UPI000900F0767.440e-2858.89peptidyl-prolyl cis-trans isomerase Pin1-like isof... [more]
UPI000C1CE4A91.330e-2761.90peptidyl-prolyl cis-trans isomerase Pin1-like n=2 ... [more]
A0A200QQU8_9MAGN1.690e-2764.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Maclea... [more]
UPI001CC5AE1A3.490e-2757.78peptidyl-prolyl cis-trans isomerase Pin1 n=4 Tax=P... [more]
K3YFS7_SETIT4.030e-2762.65Peptidyl-prolyl cis-trans isomerase n=10 Tax=Panic... [more]
A0A834ZNB5_9MAGN4.820e-2757.78Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tetrac... [more]
J3LVA2_ORYBR5.250e-2763.86Peptidyl-prolyl cis-trans isomerase n=1 Tax=Oryza ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig814contigF-serratus_M_contig814:264011..265193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.0
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog4558.Sb06g001060.1
KEGG koko:K09578
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGs37VQE@33090,3GIK0@35493,3IHTY@38820,3M03W@4447,COG0760@1,KOG3259@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03110
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932429.4691691-CDS-F-serratus_M_contig814:264010..2641061622932429.4691691-CDS-F-serratus_M_contig814:264010..264106Fucus serratus maleCDSF-serratus_M_contig814 264011..264106 -
1690964304.8245525-CDS-F-serratus_M_contig814:264010..2641061690964304.8245525-CDS-F-serratus_M_contig814:264010..264106Fucus serratus maleCDSF-serratus_M_contig814 264011..264106 -
1622932429.4902256-CDS-F-serratus_M_contig814:265019..2651931622932429.4902256-CDS-F-serratus_M_contig814:265019..265193Fucus serratus maleCDSF-serratus_M_contig814 265020..265193 -
1690964304.8386216-CDS-F-serratus_M_contig814:265019..2651931690964304.8386216-CDS-F-serratus_M_contig814:265019..265193Fucus serratus maleCDSF-serratus_M_contig814 265020..265193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig814.19559.1prot_F-serratus_M_contig814.19559.1Fucus serratus malepolypeptideF-serratus_M_contig814 264011..265193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig814.19559.1

>prot_F-serratus_M_contig814.19559.1 ID=prot_F-serratus_M_contig814.19559.1|Name=mRNA_F-serratus_M_contig814.19559.1|organism=Fucus serratus male|type=polypeptide|length=90bp
GHSHFRTNQADAINTLMDLKGKISTQQDFAEIAQEYSDCGSAKAGGDLGE
FGEGQMMKPFEDATRALRVGEISNVVDTDSGVHIILRTG*
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mRNA from alignment at F-serratus_M_contig814:264011..265193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig814.19559.1 ID=mRNA_F-serratus_M_contig814.19559.1|Name=mRNA_F-serratus_M_contig814.19559.1|organism=Fucus serratus male|type=mRNA|length=1183bp|location=Sequence derived from alignment at F-serratus_M_contig814:264011..265193- (Fucus serratus male)
GGCCATTCCCATTTCCGTACCAACCAGGCCGACGCCATCAATACCTTAAT GGACCTCAAAGGCAAGATATCGACTCAACAAGACTTCGCGGAAATTGCCC AAGAATACTCTGACTGTGGCTCCGCTAAAGCTGGTGGAGATCTTGGAGAG TTTGGCGAAGGGCAGATGATGAAGGTTCGTTGTGTTCCTTTCCCGTGAGC TGTAATGGTTTGTGGATATGAGCGAAAGCTCTCGCTAAGAGTACCAGTAC ATTTGCGCTGCCTACAACTCCTTGGCCTCACGAGCGATGAAAGGGGAAAG GGAAACAGATAAAAACAGATAATAACAGTGGTCTTGGGAGCGAAGAATTC AAAACAAGGCGATCGATCGTATTGTTGTAGACCATGCTGTGACAGGGTAG ACGCGTTTCACCTATTAATAGAACGACAAAAAGTACGTTCGCCGTAACAG TTGTCTTGAGGGTCTAAAGGTCTGTGAAGGCCTCGTATTGATGTAGGGTC GAGAGCTACTGCAAACTTCCCGTATTCTGACATGCAATGATTGAATACTG TATACAGTAGTACATGCGATAAAACTACATCGACATCCGGAGGAGGACTC ATTGGCAAATTTTGATTGGTCCAACCATCAAAGCTATACGATCGTATCGT CAATATTAATAATGTTCTATTCCGTGGCTTTAATAGTGTCGAGGTTGAAG TCACCGAGGAACCTGCTGTCGGGAGAGCTCGATGTTTGTTTGTTTTTATC TCTCGCATTTGTCACTTCTCCGACCGTTTCCCGACACGTACGATGCACAT GAATCCCACGAAAGCACCTGCCGCCAAATAGCCATAGTCTATATAGAGGC AACACAAACAGTGCGAGTGCTTCCGACGTTCTCGAGACGTTCTCCCACGA TTCACATCCGAGATAACGATTTGGGTTCAGCCGTCTCGTTGGACAGACAC GCTGCGCTTTCTTTTTTTACCCGTACGTGCTATGGTCAAAACATCTGAAG TCACGAGGGGCTAAGCTGCCCTCTCCTTCCCCCCCTTTGCAACATTTTTG TCCCTTTCTTCCTGCTACATACCGTCAACGCTGGTAGCCCTTTGAAGACG CTACGAGGGCGCTCAGGGTGGGTGAAATCTCGAACGTTGTGGACACGGAC AGTGGCGTGCACATCATTCTTCGCACAGGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig814:264011..265193-

>mRNA_F-serratus_M_contig814.19559.1 ID=mRNA_F-serratus_M_contig814.19559.1|Name=mRNA_F-serratus_M_contig814.19559.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig814:264011..265193- (Fucus serratus male)
GGCCATTCCCATTTCCGTACCAACCAGGCCGACGCCATCAATACCTTAAT
GGACCTCAAAGGCAAGATATCGACTCAACAAGACTTCGCGGAAATTGCCC
AAGAATACTCTGACTGTGGCTCCGCTAAAGCTGGTGGAGATCTTGGAGAG
TTTGGCGAAGGGCAGATGATGAAGGGCCATTCCCATTTCCGTACCAACCA
GGCCGACGCCATCAATACCTTAATGGACCTCAAAGGCAAGATATCGACTC
AACAAGACTTCGCGGAAATTGCCCAAGAATACTCTGACTGTGGCTCCGCT
AAAGCTGGTGGAGATCTTGGAGAGTTTGGCGAAGGGCAGATGATGAAGCC
CTTTGAAGACGCTACGAGGGCGCTCAGGGTGGGTGAAATCTCGAACGTTG
TGGACACGGACAGTGGCGTGCACATCATTCTTCGCACAGGGTAACCCTTT
GAAGACGCTACGAGGGCGCTCAGGGTGGGTGAAATCTCGAACGTTGTGGA
CACGGACAGTGGCGTGCACATCATTCTTCGCACAGGGTAA
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