mRNA_F-serratus_M_contig8.19291.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19291.1
Unique NamemRNA_F-serratus_M_contig8.19291.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.000e-31
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  130 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 262
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.250e-31
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+S+   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE++W+    + L AF +  D+    W  +A+D   W    E GA  FM KW   E
Sbjct:   18 HRQFLTRCIGWSKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQE 150
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BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.680e-31
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  160 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 292
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.960e-31
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:  523 RFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGIN----ADQWTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            +FLTRCIGWRK  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED+RLPK ++ G M GG G  GGQE +W+    +DL AF +      D+W  +A+D   W    E+GA  FM KW   E
Sbjct:  271 QFLTRCIGWRKRKRSDRPLSYAHALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGAAWFMRKWNRQE 401
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.810e-31
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  250 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 382
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.090e-30
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED+RLPK ++ G M GG G  GGQE +W+    +DL AF +  ++    W  +A+D   W    E  A  FM KW   E
Sbjct:   45 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQE 177
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.730e-30
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  339 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 471
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.930e-30
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKW 888
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+ C  +DL AF +  ++    W  +A+D   W    E G    M +W
Sbjct:  107 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREW 235
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.700e-30
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            HH+FL+RCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLP  ++ G M GG G  GGQE +W+    +DL AF +  ++    W  +A++   W    E GA  FM KW   E
Sbjct:  130 HHQFLSRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE 262
[Close]
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.830e-30
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  517 HHRFLTRCIGWRKHNRADHPISYLDTLLKTG-SESIEATLRRRRILFAGFVARMEDARLPKCVMFGEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRITAEQGAERFMAKWIAAE 900
            H +FLTRCIGW K  R+D P+SY   L++ G  E+IEAT+R+RR+ FAGFV RMED RLPK ++ G M GG G  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  429 HRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 561
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSH7_9PHAE1.000e-3148.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE1.250e-3147.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KB07_9PHAE1.680e-3148.87Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LG55_9PHAE4.960e-3149.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5T8_9PHAE7.810e-3148.87Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF6_9PHAE1.090e-3047.37Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE1.730e-3048.87Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ1_9PHAE1.930e-3047.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1C5_9PHAE3.700e-3046.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF72_9PHAE3.830e-3048.87Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:307882..308781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.2
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog6500.XP_005092354.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size902
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.0488615-UTR-F-serratus_M_contig8:307881..3082891622932373.0488615-UTR-F-serratus_M_contig8:307881..308289Fucus serratus maleUTRF-serratus_M_contig8 307882..308289 +
1690964276.3440356-UTR-F-serratus_M_contig8:307881..3082891690964276.3440356-UTR-F-serratus_M_contig8:307881..308289Fucus serratus maleUTRF-serratus_M_contig8 307882..308289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.067794-CDS-F-serratus_M_contig8:308289..3087811622932373.067794-CDS-F-serratus_M_contig8:308289..308781Fucus serratus maleCDSF-serratus_M_contig8 308290..308781 +
1690964276.3580573-CDS-F-serratus_M_contig8:308289..3087811690964276.3580573-CDS-F-serratus_M_contig8:308289..308781Fucus serratus maleCDSF-serratus_M_contig8 308290..308781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19291.1prot_F-serratus_M_contig8.19291.1Fucus serratus malepolypeptideF-serratus_M_contig8 308290..308781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19291.1

>prot_F-serratus_M_contig8.19291.1 ID=prot_F-serratus_M_contig8.19291.1|Name=mRNA_F-serratus_M_contig8.19291.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MSEKMTKNKEKCLKSKGLCGNIACMDQKLLNQSHLGHHRFLTRCIGWRKH
NRADHPISYLDTLLKTGSESIEATLRRRRILFAGFVARMEDARLPKCVMF
GEMVGGAGCVGGQEKEWMGCFLDDLRAFGINADQWTTAAQDEGKWRITAE
QGAERFMAKWIAAE
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mRNA from alignment at F-serratus_M_contig8:307882..308781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19291.1 ID=mRNA_F-serratus_M_contig8.19291.1|Name=mRNA_F-serratus_M_contig8.19291.1|organism=Fucus serratus male|type=mRNA|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig8:307882..308781+ (Fucus serratus male)
GTTGCAGACTGCACTTTCTGTGGGTTCAGATAGAGGTTGTCGAATTCTGG
AAAATTGACAATTGGAGGTGACGAGATGTCAATAAAATGAAAATACATGG
TACAGTACGTGACGAGGAGGGAAGACTGCTACGAGACAAAGGGCGTATCC
GCAAGAGATAGGTTCTCCTGAGAGAGACTCCCGCAGAAACCCGTATCATA
GCGAGTGCCCTCGGGACCGAGTTTACGGAGGAAGACGTTGCCACACACAG
GGATGGGCGGGATAATGGCAAACGCAAAAGCAGTGGGGCCGGACGGCCTT
CCCGTGGTACAGCTGAAACTCGGATTTCGACAAGACCGGACCATCCTCCT
AGAGCTCTGCCAACTTGCCACCCTGATCTGGCGTGAGGTGGAATGAGGCC
CATCGGCCATGAGTGAGAAGATGACAAAAAATAAGGAAAAATGCCTAAAA
TCAAAAGGTTTATGCGGGAACATTGCCTGTATGGACCAAAAACTCTTGAA
TCAGTCACATTTAGGCCACCACAGGTTCTTGACTCGCTGCATCGGTTGGC
GAAAGCACAATCGCGCCGACCACCCGATTTCCTATCTGGACACGCTCCTC
AAGACGGGAAGTGAGAGCATCGAGGCGACGTTACGCAGGAGGCGGATCTT
GTTTGCGGGATTTGTGGCGCGCATGGAGGATGCGAGACTGCCGAAGTGCG
TGATGTTCGGCGAAATGGTGGGGGGCGCGGGTTGTGTGGGGGGGCAGGAA
AAAGAGTGGATGGGGTGTTTCCTGGACGATCTCAGAGCTTTCGGCATCAA
CGCCGACCAGTGGACAACTGCAGCCCAGGACGAGGGGAAATGGCGCATAA
CGGCAGAACAAGGGGCGGAACGTTTCATGGCAAAATGGATCGCTGCCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:307882..308781+

>mRNA_F-serratus_M_contig8.19291.1 ID=mRNA_F-serratus_M_contig8.19291.1|Name=mRNA_F-serratus_M_contig8.19291.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig8:307882..308781+ (Fucus serratus male)
ATGAGTGAGAAGATGACAAAAAATAAGGAAAAATGCCTAAAATCAAAAGG
TTTATGCGGGAACATTGCCTGTATGGACCAAAAACTCTTGAATCAGTCAC
ATTTAGGCCACCACAGGTTCTTGACTCGCTGCATCGGTTGGCGAAAGCAC
AATCGCGCCGACCACCCGATTTCCTATCTGGACACGCTCCTCAAGACGGG
AAGTGAGAGCATCGAGGCGACGTTACGCAGGAGGCGGATCTTGTTTGCGG
GATTTGTGGCGCGCATGGAGGATGCGAGACTGCCGAAGTGCGTGATGTTC
GGCGAAATGGTGGGGGGCGCGGGTTGTGTGGGGGGGCAGGAAAAAGAGTG
GATGGGGTGTTTCCTGGACGATCTCAGAGCTTTCGGCATCAACGCCGACC
AGTGGACAACTGCAGCCCAGGACGAGGGGAAATGGCGCATAACGGCAGAA
CAAGGGGCGGAACGTTTCATGGCAAAATGGATCGCTGCCGAGATGAGTGA
GAAGATGACAAAAAATAAGGAAAAATGCCTAAAATCAAAAGGTTTATGCG
GGAACATTGCCTGTATGGACCAAAAACTCTTGAATCAGTCACATTTAGGC
CACCACAGGTTCTTGACTCGCTGCATCGGTTGGCGAAAGCACAATCGCGC
CGACCACCCGATTTCCTATCTGGACACGCTCCTCAAGACGGGAAGTGAGA
GCATCGAGGCGACGTTACGCAGGAGGCGGATCTTGTTTGCGGGATTTGTG
GCGCGCATGGAGGATGCGAGACTGCCGAAGTGCGTGATGTTCGGCGAAAT
GGTGGGGGGCGCGGGTTGTGTGGGGGGGCAGGAAAAAGAGTGGATGGGGT
GTTTCCTGGACGATCTCAGAGCTTTCGGCATCAACGCCGACCAGTGGACA
ACTGCAGCCCAGGACGAGGGGAAATGGCGCATAACGGCAGAACAAGGGGC
GGAACGTTTCATGGCAAAATGGATCGCTGCCGAG
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