mRNA_F-serratus_M_contig8.19297.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19297.1
Unique NamemRNA_F-serratus_M_contig8.19297.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:477458..478648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1192
Cds size1191
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.467059-CDS-F-serratus_M_contig8:477457..4786481622932370.467059-CDS-F-serratus_M_contig8:477457..478648Fucus serratus maleCDSF-serratus_M_contig8 477458..478648 +
1690964275.2219415-CDS-F-serratus_M_contig8:477457..4786481690964275.2219415-CDS-F-serratus_M_contig8:477457..478648Fucus serratus maleCDSF-serratus_M_contig8 477458..478648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19297.1prot_F-serratus_M_contig8.19297.1Fucus serratus malepolypeptideF-serratus_M_contig8 477458..478648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19297.1

>prot_F-serratus_M_contig8.19297.1 ID=prot_F-serratus_M_contig8.19297.1|Name=mRNA_F-serratus_M_contig8.19297.1|organism=Fucus serratus male|type=polypeptide|length=397bp
TSSVKLLSAASDAARFSPFIRASSVFLASAASDAASSSTLTLACSVNLAR
AASDAPSFFAFSSAFSVILVSAASDAAIVSSFSLASSAILTRVAPDARSS
SSFAHTCSVVLTRVSSVTVSLFANALTRSFTLARAASDAANISAFCRASS
VKLSSVTSKAAMFSVFTRASSVIWASAALDAASSFTLIFSSSVTLARASS
DAPSFTAFSSASSVILVSAASDAASSYLFALASSAVLARVASDSSSLSAV
ALTCSVVLTRASVVAFSLFSIALACSCTLDREASDAANISPFWRVSSVKL
SNVTSKVVIFSAFARASTVLRASAASHAANSSALALISFVLAATSDSTTF
TAASKASSRAAAASAASCTRDASLAAATCPSSTSPTSLATWAARVSA
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mRNA from alignment at F-serratus_M_contig8:477458..478648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19297.1 ID=mRNA_F-serratus_M_contig8.19297.1|Name=mRNA_F-serratus_M_contig8.19297.1|organism=Fucus serratus male|type=mRNA|length=1191bp|location=Sequence derived from alignment at F-serratus_M_contig8:477458..478648+ (Fucus serratus male)
ACTTCTTCTGTCAAACTCTTGAGCGCAGCTTCTGACGCAGCCAGATTTTC
GCCTTTCATCCGCGCTTCCTCGGTCTTCCTCGCCAGTGCAGCTTCGGATG
CAGCAAGCTCATCTACCTTGACACTTGCTTGCTCGGTCAACCTAGCCAGG
GCAGCTTCCGACGCACCTAGCTTCTTTGCATTCTCGAGCGCTTTCTCCGT
CATTCTGGTCAGCGCAGCTTCCGACGCAGCTATCGTATCTTCCTTTTCGC
TTGCTTCCTCCGCCATCCTAACCAGGGTAGCTCCCGACGCAAGAAGTTCA
TCTTCCTTCGCACACACTTGCTCAGTGGTTTTGACCAGAGTATCTTCCGT
TACAGTTAGCTTGTTTGCCAACGCACTTACTCGCTCCTTCACGCTTGCCA
GAGCAGCTTCCGACGCAGCCAACATCTCTGCCTTCTGTCGCGCTTCTTCG
GTTAAACTCTCCAGCGTAACTTCTAAAGCAGCGATGTTCTCTGTCTTTAC
ACGTGCTTCCTCCGTCATTTGGGCGAGCGCAGCTTTGGATGCAGCAAGCT
CATTTACCTTGATATTTTCTAGCTCGGTCACCCTGGCCAGGGCGTCTTCC
GACGCACCCAGCTTCACTGCATTCTCGAGCGCTTCCTCCGTCATCCTGGT
CAGTGCAGCTTCCGACGCAGCTAGTTCGTATCTCTTTGCACTCGCTTCCT
CCGCCGTCCTAGCTAGGGTAGCTTCGGATTCATCCAGCTTATCTGCTGTC
GCATTAACTTGCTCTGTAGTTTTGACCAGAGCATCCGTCGTTGCATTTAG
CTTGTTTTCTATCGCGCTTGCTTGCTCCTGTACGCTAGACAGGGAAGCTT
CCGACGCCGCCAACATATCTCCCTTCTGGCGCGTTTCTTCGGTTAAACTC
TCCAATGTAACTTCCAAAGTGGTGATCTTCTCTGCCTTTGCCCGCGCTTC
CACCGTCTTACGGGCGAGCGCAGCTTCGCACGCAGCCAACTCTTCTGCCT
TAGCACTCATTTCTTTTGTCCTCGCGGCGACCTCGGACTCGACGACCTTT
ACCGCCGCAAGTAAGGCCTCCTCCCGCGCAGCCGCCGCCTCTGCCGCCTC
TTGTACCCGCGACGCTTCGTTGGCAGCCGCAACTTGCCCTTCCTCGACCT
CACCGACGAGTCTTGCGACGTGGGCCGCAAGAGTCTCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:477458..478648+

>mRNA_F-serratus_M_contig8.19297.1 ID=mRNA_F-serratus_M_contig8.19297.1|Name=mRNA_F-serratus_M_contig8.19297.1|organism=Fucus serratus male|type=CDS|length=2382bp|location=Sequence derived from alignment at F-serratus_M_contig8:477458..478648+ (Fucus serratus male)
ACTTCTTCTGTCAAACTCTTGAGCGCAGCTTCTGACGCAGCCAGATTTTC
GCCTTTCATCCGCGCTTCCTCGGTCTTCCTCGCCAGTGCAGCTTCGGATG
CAGCAAGCTCATCTACCTTGACACTTGCTTGCTCGGTCAACCTAGCCAGG
GCAGCTTCCGACGCACCTAGCTTCTTTGCATTCTCGAGCGCTTTCTCCGT
CATTCTGGTCAGCGCAGCTTCCGACGCAGCTATCGTATCTTCCTTTTCGC
TTGCTTCCTCCGCCATCCTAACCAGGGTAGCTCCCGACGCAAGAAGTTCA
TCTTCCTTCGCACACACTTGCTCAGTGGTTTTGACCAGAGTATCTTCCGT
TACAGTTAGCTTGTTTGCCAACGCACTTACTCGCTCCTTCACGCTTGCCA
GAGCAGCTTCCGACGCAGCCAACATCTCTGCCTTCTGTCGCGCTTCTTCG
GTTAAACTCTCCAGCGTAACTTCTAAAGCAGCGATGTTCTCTGTCTTTAC
ACGTGCTTCCTCCGTCATTTGGGCGAGCGCAGCTTTGGATGCAGCAAGCT
CATTTACCTTGATATTTTCTAGCTCGGTCACCCTGGCCAGGGCGTCTTCC
GACGCACCCAGCTTCACTGCATTCTCGAGCGCTTCCTCCGTCATCCTGGT
CAGTGCAGCTTCCGACGCAGCTAGTTCGTATCTCTTTGCACTCGCTTCCT
CCGCCGTCCTAGCTAGGGTAGCTTCGGATTCATCCAGCTTATCTGCTGTC
GCATTAACTTGCTCTGTAGTTTTGACCAGAGCATCCGTCGTTGCATTTAG
CTTGTTTTCTATCGCGCTTGCTTGCTCCTGTACGCTAGACAGGGAAGCTT
CCGACGCCGCCAACATATCTCCCTTCTGGCGCGTTTCTTCGGTTAAACTC
TCCAATGTAACTTCCAAAGTGGTGATCTTCTCTGCCTTTGCCCGCGCTTC
CACCGTCTTACGGGCGAGCGCAGCTTCGCACGCAGCCAACTCTTCTGCCT
TAGCACTCATTTCTTTTGTCCTCGCGGCGACCTCGGACTCGACGACCTTT
ACCGCCGCAAGTAAGGCCTCCTCCCGCGCAGCCGCCGCCTCTGCCGCCTC
TTGTACCCGCGACGCTTCGTTGGCAGCCGCAACTTGCCCTTCCTCGACCT
CACCGACGAGTCTTGCGACGTGGGCCGCAAGAGTCTCTGCCACTTCTTCT
GTCAAACTCTTGAGCGCAGCTTCTGACGCAGCCAGATTTTCGCCTTTCAT
CCGCGCTTCCTCGGTCTTCCTCGCCAGTGCAGCTTCGGATGCAGCAAGCT
CATCTACCTTGACACTTGCTTGCTCGGTCAACCTAGCCAGGGCAGCTTCC
GACGCACCTAGCTTCTTTGCATTCTCGAGCGCTTTCTCCGTCATTCTGGT
CAGCGCAGCTTCCGACGCAGCTATCGTATCTTCCTTTTCGCTTGCTTCCT
CCGCCATCCTAACCAGGGTAGCTCCCGACGCAAGAAGTTCATCTTCCTTC
GCACACACTTGCTCAGTGGTTTTGACCAGAGTATCTTCCGTTACAGTTAG
CTTGTTTGCCAACGCACTTACTCGCTCCTTCACGCTTGCCAGAGCAGCTT
CCGACGCAGCCAACATCTCTGCCTTCTGTCGCGCTTCTTCGGTTAAACTC
TCCAGCGTAACTTCTAAAGCAGCGATGTTCTCTGTCTTTACACGTGCTTC
CTCCGTCATTTGGGCGAGCGCAGCTTTGGATGCAGCAAGCTCATTTACCT
TGATATTTTCTAGCTCGGTCACCCTGGCCAGGGCGTCTTCCGACGCACCC
AGCTTCACTGCATTCTCGAGCGCTTCCTCCGTCATCCTGGTCAGTGCAGC
TTCCGACGCAGCTAGTTCGTATCTCTTTGCACTCGCTTCCTCCGCCGTCC
TAGCTAGGGTAGCTTCGGATTCATCCAGCTTATCTGCTGTCGCATTAACT
TGCTCTGTAGTTTTGACCAGAGCATCCGTCGTTGCATTTAGCTTGTTTTC
TATCGCGCTTGCTTGCTCCTGTACGCTAGACAGGGAAGCTTCCGACGCCG
CCAACATATCTCCCTTCTGGCGCGTTTCTTCGGTTAAACTCTCCAATGTA
ACTTCCAAAGTGGTGATCTTCTCTGCCTTTGCCCGCGCTTCCACCGTCTT
ACGGGCGAGCGCAGCTTCGCACGCAGCCAACTCTTCTGCCTTAGCACTCA
TTTCTTTTGTCCTCGCGGCGACCTCGGACTCGACGACCTTTACCGCCGCA
AGTAAGGCCTCCTCCCGCGCAGCCGCCGCCTCTGCCGCCTCTTGTACCCG
CGACGCTTCGTTGGCAGCCGCAACTTGCCCTTCCTCGACCTCACCGACGA
GTCTTGCGACGTGGGCCGCAAGAGTCTCTGCC
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