mRNA_F-serratus_M_contig7966.19264.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7966.19264.1
Unique NamemRNA_F-serratus_M_contig7966.19264.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7966.19264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7966contigF-serratus_M_contig7966:5404..5875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7966.19264.1prot_F-serratus_M_contig7966.19264.1Fucus serratus malepolypeptideF-serratus_M_contig7966 5432..5743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932366.5493965-UTR-F-serratus_M_contig7966:5403..54311622932366.5493965-UTR-F-serratus_M_contig7966:5403..5431Fucus serratus maleUTRF-serratus_M_contig7966 5404..5431 +
1690964273.765748-UTR-F-serratus_M_contig7966:5403..54311690964273.765748-UTR-F-serratus_M_contig7966:5403..5431Fucus serratus maleUTRF-serratus_M_contig7966 5404..5431 +
1622932366.597022-UTR-F-serratus_M_contig7966:5743..58751622932366.597022-UTR-F-serratus_M_contig7966:5743..5875Fucus serratus maleUTRF-serratus_M_contig7966 5744..5875 +
1690964273.7872512-UTR-F-serratus_M_contig7966:5743..58751690964273.7872512-UTR-F-serratus_M_contig7966:5743..5875Fucus serratus maleUTRF-serratus_M_contig7966 5744..5875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932366.5799315-CDS-F-serratus_M_contig7966:5431..57431622932366.5799315-CDS-F-serratus_M_contig7966:5431..5743Fucus serratus maleCDSF-serratus_M_contig7966 5432..5743 +
1690964273.7763996-CDS-F-serratus_M_contig7966:5431..57431690964273.7763996-CDS-F-serratus_M_contig7966:5431..5743Fucus serratus maleCDSF-serratus_M_contig7966 5432..5743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7966.19264.1

>prot_F-serratus_M_contig7966.19264.1 ID=prot_F-serratus_M_contig7966.19264.1|Name=mRNA_F-serratus_M_contig7966.19264.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MRDAPVAPLLPQPSPTPWTFLLFQGLKLARRSLRHSRRRYHFRLLSTKRP
RFTRPVCAIATGARGILRLLRSFPNALSSTSEPFLAVSPSVPTLATIIAS
SHE*
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mRNA from alignment at F-serratus_M_contig7966:5404..5875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7966.19264.1 ID=mRNA_F-serratus_M_contig7966.19264.1|Name=mRNA_F-serratus_M_contig7966.19264.1|organism=Fucus serratus male|type=mRNA|length=472bp|location=Sequence derived from alignment at F-serratus_M_contig7966:5404..5875+ (Fucus serratus male)
ACGATAGTGGCCCCACAAACACGGCCCGATGCGAGACGCTCCTGTCGCCC
CTCTGCTGCCGCAACCGAGTCCTACTCCATGGACCTTCCTCCTCTTTCAG
GGCCTGAAACTGGCTAGAAGGTCCCTGCGACACAGCCGCCGCCGATACCA
CTTTCGGCTTCTCAGTACTAAGAGACCGAGATTTACCAGACCTGTTTGCG
CCATTGCCACCGGTGCGAGAGGCATCCTGAGACTGCTGAGGTCCTTTCCG
AACGCCCTCTCCTCCACGTCCGAACCGTTTCTGGCAGTCTCGCCATCTGT
GCCCACTCTCGCCACAATTATCGCATCGTCCCATGAATGACGCAGTCTTC
TGCGGGCTTGATCCAGCCGTCTTGACTGAAGCCCCAACGGCTACCTCGCC
ACTATCAACGTTAGCCCTTTTGCCATTGCCCACTGGGACACTGACCCCGA
GAAGCTGTTCAGCCTTCTCAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7966:5404..5875+

>mRNA_F-serratus_M_contig7966.19264.1 ID=mRNA_F-serratus_M_contig7966.19264.1|Name=mRNA_F-serratus_M_contig7966.19264.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig7966:5404..5875+ (Fucus serratus male)
ATGCGAGACGCTCCTGTCGCCCCTCTGCTGCCGCAACCGAGTCCTACTCC
ATGGACCTTCCTCCTCTTTCAGGGCCTGAAACTGGCTAGAAGGTCCCTGC
GACACAGCCGCCGCCGATACCACTTTCGGCTTCTCAGTACTAAGAGACCG
AGATTTACCAGACCTGTTTGCGCCATTGCCACCGGTGCGAGAGGCATCCT
GAGACTGCTGAGGTCCTTTCCGAACGCCCTCTCCTCCACGTCCGAACCGT
TTCTGGCAGTCTCGCCATCTGTGCCCACTCTCGCCACAATTATCGCATCG
TCCCATGAATGAATGCGAGACGCTCCTGTCGCCCCTCTGCTGCCGCAACC
GAGTCCTACTCCATGGACCTTCCTCCTCTTTCAGGGCCTGAAACTGGCTA
GAAGGTCCCTGCGACACAGCCGCCGCCGATACCACTTTCGGCTTCTCAGT
ACTAAGAGACCGAGATTTACCAGACCTGTTTGCGCCATTGCCACCGGTGC
GAGAGGCATCCTGAGACTGCTGAGGTCCTTTCCGAACGCCCTCTCCTCCA
CGTCCGAACCGTTTCTGGCAGTCTCGCCATCTGTGCCCACTCTCGCCACA
ATTATCGCATCGTCCCATGAATGA
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