mRNA_F-serratus_M_contig791.19197.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig791.19197.1
Unique NamemRNA_F-serratus_M_contig791.19197.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig791.19197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig791contigF-serratus_M_contig791:71555..71917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size354
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932352.2682285-UTR-F-serratus_M_contig791:71554..715631622932352.2682285-UTR-F-serratus_M_contig791:71554..71563Fucus serratus maleUTRF-serratus_M_contig791 71555..71563 +
1690964266.6397035-UTR-F-serratus_M_contig791:71554..715631690964266.6397035-UTR-F-serratus_M_contig791:71554..71563Fucus serratus maleUTRF-serratus_M_contig791 71555..71563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932352.287096-CDS-F-serratus_M_contig791:71563..719171622932352.287096-CDS-F-serratus_M_contig791:71563..71917Fucus serratus maleCDSF-serratus_M_contig791 71564..71917 +
1690964266.650326-CDS-F-serratus_M_contig791:71563..719171690964266.650326-CDS-F-serratus_M_contig791:71563..71917Fucus serratus maleCDSF-serratus_M_contig791 71564..71917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig791.19197.1prot_F-serratus_M_contig791.19197.1Fucus serratus malepolypeptideF-serratus_M_contig791 71564..71917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig791.19197.1

>prot_F-serratus_M_contig791.19197.1 ID=prot_F-serratus_M_contig791.19197.1|Name=mRNA_F-serratus_M_contig791.19197.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MRPWQSGGVAPEHRRDRSSGSRRKLLRCTVTGCELGFTLETVWPPGGTTR
QPLRISVPELHYLFGDNVCWSQMLASNKRERLGSENANRFRQSCTDQNVF
YDWLNTPPARPRMDAVV*
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mRNA from alignment at F-serratus_M_contig791:71555..71917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig791.19197.1 ID=mRNA_F-serratus_M_contig791.19197.1|Name=mRNA_F-serratus_M_contig791.19197.1|organism=Fucus serratus male|type=mRNA|length=363bp|location=Sequence derived from alignment at F-serratus_M_contig791:71555..71917+ (Fucus serratus male)
CTGGAGACGATGCGGCCCTGGCAGAGTGGTGGTGTAGCACCTGAACATCG
TCGTGACCGTAGCAGCGGCTCTCGACGAAAGTTGCTGCGCTGCACAGTTA
CAGGGTGTGAGCTAGGATTTACGCTAGAGACTGTTTGGCCCCCTGGTGGG
ACAACAAGGCAGCCTCTGAGGATTTCGGTCCCCGAGCTGCACTACTTGTT
CGGTGATAACGTTTGCTGGTCCCAGATGCTTGCGAGCAACAAGCGTGAGC
GTCTGGGCTCTGAAAATGCGAACAGATTCAGGCAATCGTGCACAGATCAA
AACGTGTTCTACGACTGGCTCAACACTCCACCCGCTCGCCCAAGAATGGA
TGCCGTAGTCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig791:71555..71917+

>mRNA_F-serratus_M_contig791.19197.1 ID=mRNA_F-serratus_M_contig791.19197.1|Name=mRNA_F-serratus_M_contig791.19197.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig791:71555..71917+ (Fucus serratus male)
ATGCGGCCCTGGCAGAGTGGTGGTGTAGCACCTGAACATCGTCGTGACCG
TAGCAGCGGCTCTCGACGAAAGTTGCTGCGCTGCACAGTTACAGGGTGTG
AGCTAGGATTTACGCTAGAGACTGTTTGGCCCCCTGGTGGGACAACAAGG
CAGCCTCTGAGGATTTCGGTCCCCGAGCTGCACTACTTGTTCGGTGATAA
CGTTTGCTGGTCCCAGATGCTTGCGAGCAACAAGCGTGAGCGTCTGGGCT
CTGAAAATGCGAACAGATTCAGGCAATCGTGCACAGATCAAAACGTGTTC
TACGACTGGCTCAACACTCCACCCGCTCGCCCAAGAATGGATGCCGTAGT
CTGAATGCGGCCCTGGCAGAGTGGTGGTGTAGCACCTGAACATCGTCGTG
ACCGTAGCAGCGGCTCTCGACGAAAGTTGCTGCGCTGCACAGTTACAGGG
TGTGAGCTAGGATTTACGCTAGAGACTGTTTGGCCCCCTGGTGGGACAAC
AAGGCAGCCTCTGAGGATTTCGGTCCCCGAGCTGCACTACTTGTTCGGTG
ATAACGTTTGCTGGTCCCAGATGCTTGCGAGCAACAAGCGTGAGCGTCTG
GGCTCTGAAAATGCGAACAGATTCAGGCAATCGTGCACAGATCAAAACGT
GTTCTACGACTGGCTCAACACTCCACCCGCTCGCCCAAGAATGGATGCCG
TAGTCTGA
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