mRNA_F-serratus_M_contig7807.19063.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7807.19063.1
Unique NamemRNA_F-serratus_M_contig7807.19063.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig7807.19063.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 PELSAEEGDDTEWGVLSKKDFRNMSLKVLSRKLIQRFFRGSFYMETDVEIGSTM 162
            P  SA++ D++E GV S KDFRNMSLKVLSRKL QR+FRGS YMETDVE+GS++
Sbjct:  993 PGFSADDEDESESGVFSDKDFRNMSLKVLSRKLNQRYFRGSLYMETDVEVGSSV 1046
[Close]
BLAST of mRNA_F-serratus_M_contig7807.19063.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.140e-10
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 PELSAEEGDDTEWGVLSKKDFRNMSLKV----------------------LSRKLIQRFFRGSFYMETDVEIGSTM 162
            P  SA++ D++E GV   KDFRNMSLKV                      LSRKL QR+FRGS YMETDVE+GS++
Sbjct: 1103 PGFSADDEDESESGVFPDKDFRNMSLKVVTSVVEGRWTVRKAVDDGNAQVLSRKLNQRYFRGSLYMETDVEVGSSV 1178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7807.19063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN1_9PHAE1.500e-1570.37CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LI57_ECTSI2.140e-1048.68CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7807contigF-serratus_M_contig7807:9092..9655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.5574489-CDS-F-serratus_M_contig7807:9091..91721622932326.5574489-CDS-F-serratus_M_contig7807:9091..9172Fucus serratus maleCDSF-serratus_M_contig7807 9092..9172 +
1690964254.5576637-CDS-F-serratus_M_contig7807:9091..91721690964254.5576637-CDS-F-serratus_M_contig7807:9091..9172Fucus serratus maleCDSF-serratus_M_contig7807 9092..9172 +
1622932326.5741277-CDS-F-serratus_M_contig7807:9573..96541622932326.5741277-CDS-F-serratus_M_contig7807:9573..9654Fucus serratus maleCDSF-serratus_M_contig7807 9574..9654 +
1690964254.5748353-CDS-F-serratus_M_contig7807:9573..96541690964254.5748353-CDS-F-serratus_M_contig7807:9573..9654Fucus serratus maleCDSF-serratus_M_contig7807 9574..9654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7807.19063.1prot_F-serratus_M_contig7807.19063.1Fucus serratus malepolypeptideF-serratus_M_contig7807 9092..9654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7807.19063.1

>prot_F-serratus_M_contig7807.19063.1 ID=prot_F-serratus_M_contig7807.19063.1|Name=mRNA_F-serratus_M_contig7807.19063.1|organism=Fucus serratus male|type=polypeptide|length=54bp
PELSAEEGDDTEWGVLSKKDFRNMSLKVLSRKLIQRFFRGSFYMETDVEI
GSTM
back to top

mRNA from alignment at F-serratus_M_contig7807:9092..9655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7807.19063.1 ID=mRNA_F-serratus_M_contig7807.19063.1|Name=mRNA_F-serratus_M_contig7807.19063.1|organism=Fucus serratus male|type=mRNA|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig7807:9092..9655+ (Fucus serratus male)
CCGGAGTTGTCGGCGGAAGAAGGCGACGATACCGAATGGGGAGTGCTGTC
TAAGAAGGACTTCCGAAATATGAGTCTCAAGGTGTGGTCTGCGTGCTGCT
GCAACTTGTAAGAGGGAGAGGAAGTAAACCTTTGCTGTATTAAGTAAATA
TTACTCCGGAGTACTATATATTTATATGCTAGTTGCAATACAATTGTACA
GTATAGAATTCCCGTCGGTTACGCCTGTCGGCCGCCTTGCTTCTTACGAA
ACCTCCCCAGGTTGTCACCTCCATTGTGGAGGGGCGGTGGACCGTGCAAA
AGGCAGTGGACGAGGCAAACTCTCAGGCAAGAGTCCTCCCCCCTCGGCAT
CCAAACAGACACTGTCATCTACAAAGCTGACCCCGTCGTCTTTTGCCCCA
AGCACGTGCTTGGAACTCCAAAGATACAACGTACAGTGCTTCTGATGTCC
TCTGCGCGAATTGGGCGTGGGTAATCTTTCAGGTGCTGTCGCGCAAGCTG
ATCCAGCGCTTTTTCCGGGGTAGCTTCTACATGGAGACGGACGTAGAGAT
CGGCTCTACGATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7807:9092..9655+

>mRNA_F-serratus_M_contig7807.19063.1 ID=mRNA_F-serratus_M_contig7807.19063.1|Name=mRNA_F-serratus_M_contig7807.19063.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig7807:9092..9655+ (Fucus serratus male)
CCGGAGTTGTCGGCGGAAGAAGGCGACGATACCGAATGGGGAGTGCTGTC
TAAGAAGGACTTCCGAAATATGAGTCTCAAGCCGGAGTTGTCGGCGGAAG
AAGGCGACGATACCGAATGGGGAGTGCTGTCTAAGAAGGACTTCCGAAAT
ATGAGTCTCAAGGTGCTGTCGCGCAAGCTGATCCAGCGCTTTTTCCGGGG
TAGCTTCTACATGGAGACGGACGTAGAGATCGGCTCTACGATGGTGCTGT
CGCGCAAGCTGATCCAGCGCTTTTTCCGGGGTAGCTTCTACATGGAGACG
GACGTAGAGATCGGCTCTACGATG
back to top