mRNA_F-serratus_M_contig774.18997.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig774.18997.1
Unique NamemRNA_F-serratus_M_contig774.18997.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig774.18997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig774contigF-serratus_M_contig774:236584..241937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size190
Cds size132
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig774.18997.1prot_F-serratus_M_contig774.18997.1Fucus serratus malepolypeptideF-serratus_M_contig774 236584..241879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932313.15004-CDS-F-serratus_M_contig774:236583..2366631622932313.15004-CDS-F-serratus_M_contig774:236583..236663Fucus serratus maleCDSF-serratus_M_contig774 236584..236663 +
1690964247.9157772-CDS-F-serratus_M_contig774:236583..2366631690964247.9157772-CDS-F-serratus_M_contig774:236583..236663Fucus serratus maleCDSF-serratus_M_contig774 236584..236663 +
1622932313.1646338-CDS-F-serratus_M_contig774:241827..2418791622932313.1646338-CDS-F-serratus_M_contig774:241827..241879Fucus serratus maleCDSF-serratus_M_contig774 241828..241879 +
1690964247.9267912-CDS-F-serratus_M_contig774:241827..2418791690964247.9267912-CDS-F-serratus_M_contig774:241827..241879Fucus serratus maleCDSF-serratus_M_contig774 241828..241879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932313.1905951-UTR-F-serratus_M_contig774:241879..2419371622932313.1905951-UTR-F-serratus_M_contig774:241879..241937Fucus serratus maleUTRF-serratus_M_contig774 241880..241937 +
1690964247.9355748-UTR-F-serratus_M_contig774:241879..2419371690964247.9355748-UTR-F-serratus_M_contig774:241879..241937Fucus serratus maleUTRF-serratus_M_contig774 241880..241937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig774.18997.1

>prot_F-serratus_M_contig774.18997.1 ID=prot_F-serratus_M_contig774.18997.1|Name=mRNA_F-serratus_M_contig774.18997.1|organism=Fucus serratus male|type=polypeptide|length=44bp
LNQLFHRSINFIHSECDDALIYPSFSQNEPLLLCITAFYRKRE*
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mRNA from alignment at F-serratus_M_contig774:236584..241937+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig774.18997.1 ID=mRNA_F-serratus_M_contig774.18997.1|Name=mRNA_F-serratus_M_contig774.18997.1|organism=Fucus serratus male|type=mRNA|length=5354bp|location=Sequence derived from alignment at F-serratus_M_contig774:236584..241937+ (Fucus serratus male)
CTCAACCAGTTATTTCATCGCTCTATAAATTTCATTCATTCTGAATGCGA
TGATGCCTTAATCTATCCTTCTTTTTCCCAAAACGATGTCAGGGATATAT
CATCATATTCCCCTGTAGTTTTCGCTGTCGGTATAACACAGCAGTATGAC
ATGTATGTGTTGTTAGGTTAAGTGATCTGTACGATGCAGCACAGCAGGTG
TACACAGGTGCAGAACTATATTCGTAATCGTAAACTTTGCACGGGACTGT
CACGAACCCCGGGACTGTCACGTGTACTATCGAAACTCATGTGTTTTGAT
AAGAAAGTATTTGTACTGTTGTCCTAGGGTCTAGGGTCCTTGGATAAATT
AGTCTCTCGATAGTTTAATTATTGTTTTAGTGTTATTTGAGATGGAAGTG
GCCGCATGCTTTTGTCACTCTCTCTTCTTCATCTCCAAAAACCTGACTTT
GAGGGTCAGTCAGTAATAAAGTTATCTTCTTATCTTCTAACTTTTGTTCT
TGAGGCACATCGAGAGTCGCTGCCGCGCTCCGGTGAAACCTCTGCTCACA
GACTCTCCACCGAGTCTGCTGAAGTTTACAGCACAGCAGATCCCCCTGCC
AGCGCTGCACACATTACCTTATCAGGTTATTGAGCCTCGACGTCTACACT
CCGAGCTGCGGACATCACGGTGTTGTTTGTTCGAATTACATCATCGTCAG
GACTCCAAACTGCCTTTTCTGTGCTGCTGCAGTTCTTCAACTGCAGCTTC
AACATACACAGTCCCGGACAAGAACTGAAGATATTTTAGATCGAGGTCGA
CACGGTCGACAGACACCGACCACCTTCACGCCACTTTGAGAGGGTACGAG
GGGCGGTGATCGGGAAGCCTCAAGTATTACCTTGAGCAACTACTGCTGAC
GTAAGGCCAAGGAGCAACAGCAGGGGATCGGCCTCAACACCACTTCAAGA
GGGTACGAGGACCTCAACGTCACTTCGAGAGGGCACGAGTAAAAACGATT
GGAATTTTTGACATCGACCACCTTTACATCACTTCGAGAGGATACGAGGG
GCGGTGCTCGCAACAACGACATCTGCACGCAGCGGCGAATTAACGCCGCC
GGCAATATCAGTAACAACAAGCAACAACAACAGTGTCACCGCCGTAACAA
GCAGCTGGAGTCACCAACATGAACGTATATAGCGGGGGCCAGCCTGGCCA
ACACAATTCGGGGCCTCAAGAAGTTTGATGGGAGGAACCCAGCCGAATTC
AAGACCTGGATGAAGAAGCTCTGCGTCGTTATCAGCGTCACCAGGAGGGA
CATTCTGCCTCTACTAAAAGAAACAGCGAGGCCAACTCACACCAGCAACC
TTGAGGAGTACAACAGGGCTAACGAAGACCTCTACGCCATGCTCTTCCTT
CTTGTCGAGCTACCCGCGTCCCTTTGTGTCCAAAAGCACGAAAACGACGA
CGAGATCAGCGGCGACGGGCAAGCAGCCTTCAAGGAACTCTGCAGCACCT
ACGACAAGGTTACCGACGAAGTCATTCGAGCCACCATGGAGGAGCTCGTG
AACACGCCGATGGAGCCCGGACAAAATCCGGACGATTATTTTAACCAGAA
ACGTCTTCTTCGCATCAGGACCGAAAAAATGGGAGAACACATCTCCGACC
GATACTTCAAGGACATCTGCGTCACGGGGTTCACCGACAACTACAAAGAC
GTGAAAATGATGATGTACCGAGACCCCTCCTTTGACGTCGACCAGATGCA
GACCACCATGCGGCACATGTTTCTTGACGAGCCGTCACGGAACAGGACGA
AAGGACGCATCGCTGGGCGCGGAAGTGTTATGACAGCGGTGACATCGGAG
CAGGACATCATCTGCTACTGGTGCAAGAATCGTGGGCACTCAAAGAAGGA
CTGCCCCAAGTTCAAGTCTCGGACCAAACCAGCTAGAGCAGCGAAGTGGT
GCTCTGTCCACCGGACCACCACTCACCGCAACGAAGAATGCTACAGCCAA
GGAGCAACGCGCCCGACCAAGAACGCGAGCGTATCCCTAGCGTGCACAAA
CTGCGGGCACTGCACTTCGGCAGACAGCAAGGAACTCACCGTCGACAATA
CCGAGCCATCCCACAGCAATAAGCCGGCTATCAACTTCGCCGGCAGCAGT
GACGAATTTGATGGGGGTTTCGTGTACGCAGCCGGAATGCCGGGACGCTT
CACCCCTAGTGCCAAGGGTGCAACTTTACTGGTTGATAGCGGCGCGTCGG
AATCCTTCCTCGACGACGAGCTCATCCCGGACCTCAAGACTCGGATGCGA
GAATTTAAAACCCTATCGACGCCACGAGAGATCACGACAGCTGGAAAACA
CACCCTCCACGGCATCGGGACTGGCATCATCTCTTTTACCATCTGCGACA
ACCACGGTACCCAGCTCCCAGTCAACATGCGCGCGTTGGTGGTACCCGGA
CTCGGCCGAAACATCTTTGCCCCAACTGCTGAACTGAGGAATGGAGTTAA
GTTCGTACTGGAGAAAAATCCGTACCTGACCGTCCGCGACACCGTCATCC
CGCTTAAGCAGGACCCTCGAGACCAAGGGACGTGCTCGCTCGACATCACG
TTTCCGCGTGACTCCCACGGAGTGCTCGGCAAATCCGAGGGGTTTCCCCC
GACAGCGCGTCTGGGGTCGTGTACACCGCTACAACCAGCGCTAGCGTCTG
GCACCGCCGACTGGGACACATGAACCCCCGCAACATGGAGGTACTGCGCA
ACAAGAAAGGGAACGGAGTGGAGTACACCGGGACCATCTCGGGCTGCGAT
ATCTGCTCCGTGACCAAAAGCAAGCAACAAGCGCACCCGAAGAAAAGCAC
GACGAAAGACTACCACTACGAGGAAGACGTTCTTCGGTTCACGTCGGTGT
TAGATTCATCTCTCCTGGAGGAGGACCTCTTCACCCCGAACTGCGACCTC
TCATCAGCGGACCTCAAAGGACAAGTCCAACGCCTACGACAAGAGGTGCG
CAGACTCAGCAAGATTAACGCCGCCCAATCACCGTCACCATCGTCTACTC
CTGCTTCTCCTGGGGTCGCAGTGGACCGACGTGATGCAGGAACAAGGGAA
CCTGAACCCGCCTCGCCAAGCATCAACCAAGAGCCTGAAAATGAGGATGA
GCACGGACCGCCATTATCAGCGGCCCCGGTAACAGGCCCTTCTCGGAAGA
TCAGAAGCGACGGACGACCGTTTGAAGTCACTCGAGCCAGCACAAGACGC
AGTCCGAGCAACAAGGACACTGAATATCCGGACGCGCAAAAGTCACCAAA
GTGGGGCGATTGGAACAACGCCATTCAGAAGGAGATAATATATAGCCTGC
GGAAGCACAACGTCTACAAGCTGGTCAAGATGTCCAGTATCCCGAAAGAA
GAAAATATCATCGGCTCACGCTTCGTTTTCAAGCAGAAGGTAGACGGAAG
GTTCAAAGCCAGACTCGCCGTTCAAGGCTACGTACAAGAGGCTGGGGTCG
ACTACGGGAGAAGCTACGCCCCAGTGTGCCGCATCGGGAGCATAAGGACA
GTACTCGCCATCGCATGCGAGCACGGATGGCCCGTTTGGCAGATGGACGT
GGTGGTAGCACTTCTCCAAGCGCACATCGACAAGGACATCTACGCAAAAC
CAGCTCCAGGGCACGACCCAAGGGACCCCAAAACTGGCGAGGTCATGGTC
TACAAGCTTGAGCGGAGCCTTTACGGACTAGCCCAGTCACCAGTGTTGTG
GCACGACACTATCAACGGAGTGCTGATCGTGATCGGTTTCAGTCCCAGAC
ACTCCGACCCCTGCGTGTATGTACACGGAAGCGGTGACACCCTCATCATC
CTGACCCTCTACGTCGACGATAGTGACTCGCATCCTTGGGATGGAGGTCA
AGCGCGACTACGACCAGGGGACCCTCGCCATCACCCAGACAGACTACGTC
GAGAACCTCCTAGAACGCTTCGAGATGCAAAACGCGAATATCGCGCACAC
ACCGGGATACGGACAAGAGCTATCATCAGAGCAGCCGGAGGACAAACTAC
TTGGAGCGCAAGGAATCAAGCTCTACCAGTCCATCACGGGCAGCCTGCTC
TGTCTCGCACAACGCACGAGGCACGACCTGTGCTACGCGGTGAACCAACT
TACGAGAGCATGCAGCAGGCCGGCAGAGGTTCACATGACAGCGGTCAAGA
ATTAGGACTCAAGGACTCCTCACAGGTCCCCATCCGCAGCGACAGCACAG
GAGCACTCAGCGTTGCGGGAAATAGCATGTTCAGTGCCAGGACCAAGCAT
ATCGCTCTTCGGTACTTCTTCGTACGTGAGCTTGTCAAGAAGAACAAGAT
CACCCTTCACTCCACGCCGACCAAGCAGATGCTCGCGGACATCGCAACCA
AGCACCTGTCCAAGCACACCTTCCGTGATCTCCTTCAACAGGTCAAAAAT
CTCATGTCTTGAGAGAATTCGGAGTTGTTGTTTTTTTAGAGAGAGAGACT
GTCGTATAGTGGGTTAATGTCAAAGTGCACATAGGCTCATTTGTTTGATA
AGACACCGGAGCGGTTTCTTTCCTCCGCATGACGTGAAGAGTAACGTTTG
TACGCAGTAACGTACGAGGAAAGCATGACATGCTTGACTTTATATTTAGA
GTAGACCCAGGTGGAGGAGACGGATTATTTCGCAGTGTTCCCTCCAACGT
GGGGTCGTGTCAGGGATATATCATCATATTCCCCTGTAGTTTTCGCTGTC
GGTATAACACAGCAGTATGACATATATGTGTTGTTAGGTTAAGTGATCTG
TACGATGCAGCACAGCAGGTGTACACAGGTGCAGAACTATATTCGTAATC
GTAAACTTTGCACGGGACTGTCACGAACCCTGGGACTGTCACGTGTACTA
TCGAAACTCATGTGTTTTGATAAGAAAGTATTTGTACTGTTGTCCTAGGG
TCTAGGGTCCTTGGATAAATTAGTCTCTCGGTAGTTTAATTATTGTTTTA
GTGTTATTTGAGATGGAAGTGGCCGCATGCTTTTGTCACTCTCTCTTCTT
CATCTCCAAAAACCTGACTTTGAGGGTCAGTCAGTAATAAAGTTATCTTC
TTATCTTCTAACTTTTGTTCTTGAGGCACATCGAGAGTCGCTGCCGCGCT
CCTGTGAAACCTCTGCTCACAGACTCTCCGCCGAGTCTGCTGAAGTTTAC
AGCACAGCAGATCCCCCTGCCAGCGCTGCACACATTACCTTATCAAACGA
ACCATTGCTACTGTGCATTACCGCTTTCTATAGAAAACGCGAGTAATATT
TTCTACCCAGTTCAGTTCAGTACGAGCAGACTGCTGTCGTACAACAGTAC
AAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig774:236584..241937+

>mRNA_F-serratus_M_contig774.18997.1 ID=mRNA_F-serratus_M_contig774.18997.1|Name=mRNA_F-serratus_M_contig774.18997.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig774:236584..241937+ (Fucus serratus male)
CTCAACCAGTTATTTCATCGCTCTATAAATTTCATTCATTCTGAATGCGA
TGATGCCTTAATCTATCCTTCTTTTTCCCACTCAACCAGTTATTTCATCG
CTCTATAAATTTCATTCATTCTGAATGCGATGATGCCTTAATCTATCCTT
CTTTTTCCCAAAACGAACCATTGCTACTGTGCATTACCGCTTTCTATAGA
AAACGCGAGTAAAAACGAACCATTGCTACTGTGCATTACCGCTTTCTATA
GAAAACGCGAGTAA
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