prot_F-serratus_M_contig77.18952.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig77.18952.1
Unique Nameprot_F-serratus_M_contig77.18952.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length99
Homology
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.110e-54
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEEKAKDDG--GANGMDEEEDEG 98
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDG+FAGNLGDVLIRCNNVLYLRG E DE  AK DG  GANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG 101          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 142 bits (358), Expect = 2.330e-42
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEEKAKDD 85
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DGQF GNLG+VLIRCNNVLYLRG   DE+  ++D
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A9S411_PHYPA (Sm protein F n=5 Tax=Streptophytina TaxID=131221 RepID=A9S411_PHYPA)

HSP 1 Score: 141 bits (355), Expect = 6.670e-42
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEEKAKDD 85
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEE+VDG F GNLG+VLIRCNNV+YLRG   DE+ A+DD
Sbjct:    1 MATIPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNNVMYLRGVPEDEDAAEDD 86          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 141 bits (355), Expect = 8.470e-42
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEE 80
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG   DEE
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEE 88          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 1.930e-41
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAE 76
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DGQFAGNLG+VLIRCNNVLYLRGAE
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 139 bits (351), Expect = 2.640e-41
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAE 76
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAE
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 139 bits (351), Expect = 2.720e-41
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEE 80
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG   DEE
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEE 80          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 139 bits (350), Expect = 3.750e-41
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEE 80
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDGQF GNLG++LIRCNNVLYLRG   DEE
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEE 81          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A6I9QRJ1_ELAGV (Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6I9QRJ1_ELAGV)

HSP 1 Score: 140 bits (352), Expect = 3.820e-41
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEE 80
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DGQF+GNLG++LIRCNNVLYLRG   DEE
Sbjct:   27 AVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDEE 105          
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 139 bits (350), Expect = 4.750e-41
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEGDEE 80
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG   DEE
Sbjct:   11 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEE 89          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI1.110e-5491.09Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A176VZF1_MARPO2.330e-4279.07Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A9S411_PHYPA6.670e-4279.07Sm protein F n=5 Tax=Streptophytina TaxID=131221 R... [more]
A0A7J6WA49_THATH8.470e-4282.28Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A7S0SJP6_9CHLO1.930e-4185.33Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
C1EHA5_MICCC2.640e-4187.67Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A6P9F5Z8_JUGRE2.720e-4180.00Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A804J679_MUSAM3.750e-4182.72Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A6I9QRJ1_ELAGV3.820e-4181.01Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183... [more]
A0A5P1EWT9_ASPOF4.750e-4181.01Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 7.4E-23
score: 91.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 4.0E-20
score: 71.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 1.5E-30
score: 106.5
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..82
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 1.2E-36
score: 122.4
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..82
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:560887..572592 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18952.1mRNA_F-serratus_M_contig77.18952.1Fucus serratus malemRNAF-serratus_M_contig77 560303..572835 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig77.18952.1 ID=prot_F-serratus_M_contig77.18952.1|Name=mRNA_F-serratus_M_contig77.18952.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGQFAGNLGDVLIRCNNVLYLRGAEGDEEKAKDDGGANGMDEEEDEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf