mRNA_F-serratus_M_contig766.18922.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig766.18922.1
Unique NamemRNA_F-serratus_M_contig766.18922.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig766.18922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig766contigF-serratus_M_contig766:251235..252119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig766.18922.1prot_F-serratus_M_contig766.18922.1Fucus serratus malepolypeptideF-serratus_M_contig766 251260..251841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.8194447-UTR-F-serratus_M_contig766:251234..2512591622932296.8194447-UTR-F-serratus_M_contig766:251234..251259Fucus serratus maleUTRF-serratus_M_contig766 251235..251259 +
1690964240.3151424-UTR-F-serratus_M_contig766:251234..2512591690964240.3151424-UTR-F-serratus_M_contig766:251234..251259Fucus serratus maleUTRF-serratus_M_contig766 251235..251259 +
1622932296.8737009-UTR-F-serratus_M_contig766:251841..2521191622932296.8737009-UTR-F-serratus_M_contig766:251841..252119Fucus serratus maleUTRF-serratus_M_contig766 251842..252119 +
1690964240.338291-UTR-F-serratus_M_contig766:251841..2521191690964240.338291-UTR-F-serratus_M_contig766:251841..252119Fucus serratus maleUTRF-serratus_M_contig766 251842..252119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.8565018-CDS-F-serratus_M_contig766:251259..2518411622932296.8565018-CDS-F-serratus_M_contig766:251259..251841Fucus serratus maleCDSF-serratus_M_contig766 251260..251841 +
1690964240.3257143-CDS-F-serratus_M_contig766:251259..2518411690964240.3257143-CDS-F-serratus_M_contig766:251259..251841Fucus serratus maleCDSF-serratus_M_contig766 251260..251841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig766.18922.1

>prot_F-serratus_M_contig766.18922.1 ID=prot_F-serratus_M_contig766.18922.1|Name=mRNA_F-serratus_M_contig766.18922.1|organism=Fucus serratus male|type=polypeptide|length=194bp
MNDLVLGITVQNTNHSRKNEAGAPKNGKHVTPTPSHRTHGARQHTHLPRN
TQHGCRHAPEKALSITHKKSHQQDSLAPAPRLRTNKNASLPRRTSKADST
TMGVCWFSPQANSSRNNPSAAFKRRLSIPKQKTAALRFRKEVHAVVRTRR
KDIYCQLVSFPQVRASGRWSPLRGEEPFRGPFSRCFLLLHPRR*
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mRNA from alignment at F-serratus_M_contig766:251235..252119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig766.18922.1 ID=mRNA_F-serratus_M_contig766.18922.1|Name=mRNA_F-serratus_M_contig766.18922.1|organism=Fucus serratus male|type=mRNA|length=885bp|location=Sequence derived from alignment at F-serratus_M_contig766:251235..252119+ (Fucus serratus male)
CTGGAAACCCCTTGGAGGCATCCAAATGAATGACTTGGTTTTAGGGATAA
CAGTCCAAAACACAAACCATAGCAGAAAAAACGAAGCTGGCGCACCAAAG
AACGGAAAACACGTGACCCCTACACCTTCTCACCGCACGCACGGAGCCCG
ACAACACACGCACCTCCCAAGGAACACGCAACATGGCTGTCGACATGCTC
CAGAGAAAGCCCTCTCGATAACACACAAAAAAAGTCACCAGCAGGACAGT
CTCGCCCCCGCCCCCCGCCTCAGGACGAACAAGAATGCTTCGCTGCCGCG
CAGGACGTCAAAGGCAGACTCAACTACGATGGGGGTCTGCTGGTTTTCCC
CTCAAGCAAACTCTTCTCGCAACAACCCCTCTGCGGCATTCAAGCGTCGC
CTCTCCATCCCCAAACAAAAGACCGCTGCGCTGCGGTTTCGAAAAGAAGT
CCACGCTGTAGTACGCACACGCCGGAAAGACATCTACTGTCAACTTGTAT
CCTTCCCACAGGTTCGGGCTTCCGGCCGCTGGTCACCACTCAGGGGAGAA
GAACCCTTCCGCGGACCGTTCTCCCGATGTTTCCTACTTCTCCACCCGCG
TCGCTAGGTCCTCACAGCCGGTCACTCAGGAGGAGTTCCACGTTTGTCAG
GCGTCGGCGTCGTCGTATGGCTCTGGACCAGTGTCGAAGAATCCTTCCTC
CCAGCACCGTCGCAATCGCCGCCAGCTTATACGGCTGGAGGAGCGGCGGC
GGAAGCGGCGGCGGGGGAACGACTGGTCTTGTGCTCTCGCATGACGTGCT
TCACGAGGGAGTGCCGGTGGACGAACATCATGCCGCACCCGGAAGCCTCG
CACCGGAACTTCTTGCGCCCGCCCTGGCGGCGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig766:251235..252119+

>mRNA_F-serratus_M_contig766.18922.1 ID=mRNA_F-serratus_M_contig766.18922.1|Name=mRNA_F-serratus_M_contig766.18922.1|organism=Fucus serratus male|type=CDS|length=1164bp|location=Sequence derived from alignment at F-serratus_M_contig766:251235..252119+ (Fucus serratus male)
ATGAATGACTTGGTTTTAGGGATAACAGTCCAAAACACAAACCATAGCAG
AAAAAACGAAGCTGGCGCACCAAAGAACGGAAAACACGTGACCCCTACAC
CTTCTCACCGCACGCACGGAGCCCGACAACACACGCACCTCCCAAGGAAC
ACGCAACATGGCTGTCGACATGCTCCAGAGAAAGCCCTCTCGATAACACA
CAAAAAAAGTCACCAGCAGGACAGTCTCGCCCCCGCCCCCCGCCTCAGGA
CGAACAAGAATGCTTCGCTGCCGCGCAGGACGTCAAAGGCAGACTCAACT
ACGATGGGGGTCTGCTGGTTTTCCCCTCAAGCAAACTCTTCTCGCAACAA
CCCCTCTGCGGCATTCAAGCGTCGCCTCTCCATCCCCAAACAAAAGACCG
CTGCGCTGCGGTTTCGAAAAGAAGTCCACGCTGTAGTACGCACACGCCGG
AAAGACATCTACTGTCAACTTGTATCCTTCCCACAGGTTCGGGCTTCCGG
CCGCTGGTCACCACTCAGGGGAGAAGAACCCTTCCGCGGACCGTTCTCCC
GATGTTTCCTACTTCTCCACCCGCGTCGCTAGATGAATGACTTGGTTTTA
GGGATAACAGTCCAAAACACAAACCATAGCAGAAAAAACGAAGCTGGCGC
ACCAAAGAACGGAAAACACGTGACCCCTACACCTTCTCACCGCACGCACG
GAGCCCGACAACACACGCACCTCCCAAGGAACACGCAACATGGCTGTCGA
CATGCTCCAGAGAAAGCCCTCTCGATAACACACAAAAAAAGTCACCAGCA
GGACAGTCTCGCCCCCGCCCCCCGCCTCAGGACGAACAAGAATGCTTCGC
TGCCGCGCAGGACGTCAAAGGCAGACTCAACTACGATGGGGGTCTGCTGG
TTTTCCCCTCAAGCAAACTCTTCTCGCAACAACCCCTCTGCGGCATTCAA
GCGTCGCCTCTCCATCCCCAAACAAAAGACCGCTGCGCTGCGGTTTCGAA
AAGAAGTCCACGCTGTAGTACGCACACGCCGGAAAGACATCTACTGTCAA
CTTGTATCCTTCCCACAGGTTCGGGCTTCCGGCCGCTGGTCACCACTCAG
GGGAGAAGAACCCTTCCGCGGACCGTTCTCCCGATGTTTCCTACTTCTCC
ACCCGCGTCGCTAG
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