mRNA_F-serratus_M_contig766.18920.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig766.18920.1
Unique NamemRNA_F-serratus_M_contig766.18920.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig766.18920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig766contigF-serratus_M_contig766:247235..247939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.7075953-CDS-F-serratus_M_contig766:247234..2479391622932296.7075953-CDS-F-serratus_M_contig766:247234..247939Fucus serratus maleCDSF-serratus_M_contig766 247235..247939 +
1690964240.286967-CDS-F-serratus_M_contig766:247234..2479391690964240.286967-CDS-F-serratus_M_contig766:247234..247939Fucus serratus maleCDSF-serratus_M_contig766 247235..247939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig766.18920.1prot_F-serratus_M_contig766.18920.1Fucus serratus malepolypeptideF-serratus_M_contig766 247235..247939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig766.18920.1

>prot_F-serratus_M_contig766.18920.1 ID=prot_F-serratus_M_contig766.18920.1|Name=mRNA_F-serratus_M_contig766.18920.1|organism=Fucus serratus male|type=polypeptide|length=235bp
RGVQSTAVSGFREQAEDWQWTTGGKGGAVSRPAQKRDRVAQDWHRRTIAD
VGGKLSGVERQNVSPFSGETVASTGDERVGSWISNGEATPSPLPSPPAPL
RPTSKSSRTIASSRQCSLPLTRQPPPCLSHHLASGRKPLRTYTKERWRVC
ESTTERQRKDFTARQKVSVDEGGHCCYRKSSGGPTDNDDTGGGGMHRAPP
STKSLSPAKQAAFRDPAVKDDDPPLIWCGGTPRRD
back to top

mRNA from alignment at F-serratus_M_contig766:247235..247939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig766.18920.1 ID=mRNA_F-serratus_M_contig766.18920.1|Name=mRNA_F-serratus_M_contig766.18920.1|organism=Fucus serratus male|type=mRNA|length=705bp|location=Sequence derived from alignment at F-serratus_M_contig766:247235..247939+ (Fucus serratus male)
AGAGGTGTTCAGTCTACCGCGGTGTCCGGGTTCCGGGAACAGGCTGAGGA
CTGGCAATGGACCACCGGCGGCAAGGGTGGTGCTGTTTCTCGTCCTGCCC
AGAAACGTGACCGCGTTGCGCAAGACTGGCACCGGAGGACGATCGCCGAT
GTGGGGGGGAAATTGTCGGGCGTCGAGCGTCAAAACGTGAGCCCCTTTAG
TGGTGAGACCGTGGCATCGACTGGAGACGAGAGAGTCGGCAGCTGGATCT
CGAATGGGGAGGCAACCCCGTCCCCGCTGCCGTCACCACCGGCGCCTTTG
AGGCCCACCTCAAAATCATCAAGAACGATCGCTTCCTCGCGACAGTGCTC
ACTGCCGCTGACCAGGCAACCCCCGCCTTGTCTCTCGCATCATCTCGCGA
GTGGTCGCAAGCCGTTAAGGACCTACACGAAAGAGCGTTGGCGAGTCTGC
GAGAGCACAACGGAGCGGCAGCGCAAGGATTTCACTGCTCGTCAAAAGGT
GTCGGTCGATGAGGGGGGCCATTGCTGCTATCGTAAATCATCTGGAGGAC
CGACCGATAATGATGACACGGGCGGCGGTGGAATGCACAGAGCGCCGCCA
TCAACAAAGTCTTTGAGTCCTGCGAAGCAGGCGGCCTTCCGAGATCCTGC
CGTCAAAGATGATGACCCGCCTTTGATATGGTGTGGTGGAACACCCCGGA
GGGAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig766:247235..247939+

>mRNA_F-serratus_M_contig766.18920.1 ID=mRNA_F-serratus_M_contig766.18920.1|Name=mRNA_F-serratus_M_contig766.18920.1|organism=Fucus serratus male|type=CDS|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig766:247235..247939+ (Fucus serratus male)
AGAGGTGTTCAGTCTACCGCGGTGTCCGGGTTCCGGGAACAGGCTGAGGA
CTGGCAATGGACCACCGGCGGCAAGGGTGGTGCTGTTTCTCGTCCTGCCC
AGAAACGTGACCGCGTTGCGCAAGACTGGCACCGGAGGACGATCGCCGAT
GTGGGGGGGAAATTGTCGGGCGTCGAGCGTCAAAACGTGAGCCCCTTTAG
TGGTGAGACCGTGGCATCGACTGGAGACGAGAGAGTCGGCAGCTGGATCT
CGAATGGGGAGGCAACCCCGTCCCCGCTGCCGTCACCACCGGCGCCTTTG
AGGCCCACCTCAAAATCATCAAGAACGATCGCTTCCTCGCGACAGTGCTC
ACTGCCGCTGACCAGGCAACCCCCGCCTTGTCTCTCGCATCATCTCGCGA
GTGGTCGCAAGCCGTTAAGGACCTACACGAAAGAGCGTTGGCGAGTCTGC
GAGAGCACAACGGAGCGGCAGCGCAAGGATTTCACTGCTCGTCAAAAGGT
GTCGGTCGATGAGGGGGGCCATTGCTGCTATCGTAAATCATCTGGAGGAC
CGACCGATAATGATGACACGGGCGGCGGTGGAATGCACAGAGCGCCGCCA
TCAACAAAGTCTTTGAGTCCTGCGAAGCAGGCGGCCTTCCGAGATCCTGC
CGTCAAAGATGATGACCCGCCTTTGATATGGTGTGGTGGAACACCCCGGA
GGGATAGAGGTGTTCAGTCTACCGCGGTGTCCGGGTTCCGGGAACAGGCT
GAGGACTGGCAATGGACCACCGGCGGCAAGGGTGGTGCTGTTTCTCGTCC
TGCCCAGAAACGTGACCGCGTTGCGCAAGACTGGCACCGGAGGACGATCG
CCGATGTGGGGGGGAAATTGTCGGGCGTCGAGCGTCAAAACGTGAGCCCC
TTTAGTGGTGAGACCGTGGCATCGACTGGAGACGAGAGAGTCGGCAGCTG
GATCTCGAATGGGGAGGCAACCCCGTCCCCGCTGCCGTCACCACCGGCGC
CTTTGAGGCCCACCTCAAAATCATCAAGAACGATCGCTTCCTCGCGACAG
TGCTCACTGCCGCTGACCAGGCAACCCCCGCCTTGTCTCTCGCATCATCT
CGCGAGTGGTCGCAAGCCGTTAAGGACCTACACGAAAGAGCGTTGGCGAG
TCTGCGAGAGCACAACGGAGCGGCAGCGCAAGGATTTCACTGCTCGTCAA
AAGGTGTCGGTCGATGAGGGGGGCCATTGCTGCTATCGTAAATCATCTGG
AGGACCGACCGATAATGATGACACGGGCGGCGGTGGAATGCACAGAGCGC
CGCCATCAACAAAGTCTTTGAGTCCTGCGAAGCAGGCGGCCTTCCGAGAT
CCTGCCGTCAAAGATGATGACCCGCCTTTGATATGGTGTGGTGGAACACC
CCGGAGGGAT
back to top