mRNA_F-serratus_M_contig750.18783.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig750.18783.1
Unique NamemRNA_F-serratus_M_contig750.18783.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig750.18783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig750contigF-serratus_M_contig750:183206..183619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig750.18783.1prot_F-serratus_M_contig750.18783.1Fucus serratus malepolypeptideF-serratus_M_contig750 183212..183577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932269.5383158-UTR-F-serratus_M_contig750:183205..1832111622932269.5383158-UTR-F-serratus_M_contig750:183205..183211Fucus serratus maleUTRF-serratus_M_contig750 183206..183211 +
1690964227.4291804-UTR-F-serratus_M_contig750:183205..1832111690964227.4291804-UTR-F-serratus_M_contig750:183205..183211Fucus serratus maleUTRF-serratus_M_contig750 183206..183211 +
1622932269.5736349-UTR-F-serratus_M_contig750:183577..1836191622932269.5736349-UTR-F-serratus_M_contig750:183577..183619Fucus serratus maleUTRF-serratus_M_contig750 183578..183619 +
1690964227.4541652-UTR-F-serratus_M_contig750:183577..1836191690964227.4541652-UTR-F-serratus_M_contig750:183577..183619Fucus serratus maleUTRF-serratus_M_contig750 183578..183619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932269.5566545-CDS-F-serratus_M_contig750:183211..1835771622932269.5566545-CDS-F-serratus_M_contig750:183211..183577Fucus serratus maleCDSF-serratus_M_contig750 183212..183577 +
1690964227.4412951-CDS-F-serratus_M_contig750:183211..1835771690964227.4412951-CDS-F-serratus_M_contig750:183211..183577Fucus serratus maleCDSF-serratus_M_contig750 183212..183577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig750.18783.1

>prot_F-serratus_M_contig750.18783.1 ID=prot_F-serratus_M_contig750.18783.1|Name=mRNA_F-serratus_M_contig750.18783.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MSAEGVPIKPSSLRPQYPQTRSVLQLQPQRSLCERTHRRFRFRRRYHPHN
SNFWLRYAYAPRSRGTASRGEISVYQCALYAKRAVSTKQVPYGATLVSPV
EPMLPSPFSILWLGAGIGLRI*
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mRNA from alignment at F-serratus_M_contig750:183206..183619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig750.18783.1 ID=mRNA_F-serratus_M_contig750.18783.1|Name=mRNA_F-serratus_M_contig750.18783.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig750:183206..183619+ (Fucus serratus male)
TTTTGTATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAAGCTTGAGGCC
GCAGTACCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCGCAGCGGTCAC
TATGCGAACGGACCCACCGCCGCTTCCGCTTCCGCCGGCGCTACCACCCC
CACAACTCCAATTTCTGGTTGCGCTACGCGTACGCTCCCCGCAGCCGCGG
GACCGCCTCCCGAGGAGAGATATCTGTCTACCAGTGCGCCCTTTACGCGA
AAAGAGCAGTCTCGACGAAACAGGTACCGTACGGTGCAACCCTTGTGTCG
CCAGTTGAACCAATGCTCCCCTCTCCCTTCAGTATACTGTGGTTGGGGGC
GGGTATAGGCCTGCGAATATAGCCGAAGTTAGATCTCAGTCCCCTTTGAT
TCCTCTTTATGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig750:183206..183619+

>mRNA_F-serratus_M_contig750.18783.1 ID=mRNA_F-serratus_M_contig750.18783.1|Name=mRNA_F-serratus_M_contig750.18783.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig750:183206..183619+ (Fucus serratus male)
ATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAAGCTTGAGGCCGCAGTA
CCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCGCAGCGGTCACTATGCG
AACGGACCCACCGCCGCTTCCGCTTCCGCCGGCGCTACCACCCCCACAAC
TCCAATTTCTGGTTGCGCTACGCGTACGCTCCCCGCAGCCGCGGGACCGC
CTCCCGAGGAGAGATATCTGTCTACCAGTGCGCCCTTTACGCGAAAAGAG
CAGTCTCGACGAAACAGGTACCGTACGGTGCAACCCTTGTGTCGCCAGTT
GAACCAATGCTCCCCTCTCCCTTCAGTATACTGTGGTTGGGGGCGGGTAT
AGGCCTGCGAATATAGATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAA
GCTTGAGGCCGCAGTACCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCG
CAGCGGTCACTATGCGAACGGACCCACCGCCGCTTCCGCTTCCGCCGGCG
CTACCACCCCCACAACTCCAATTTCTGGTTGCGCTACGCGTACGCTCCCC
GCAGCCGCGGGACCGCCTCCCGAGGAGAGATATCTGTCTACCAGTGCGCC
CTTTACGCGAAAAGAGCAGTCTCGACGAAACAGGTACCGTACGGTGCAAC
CCTTGTGTCGCCAGTTGAACCAATGCTCCCCTCTCCCTTCAGTATACTGT
GGTTGGGGGCGGGTATAGGCCTGCGAATATAG
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