mRNA_F-serratus_M_contig1247.1874.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1247.1874.1
Unique NamemRNA_F-serratus_M_contig1247.1874.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 1.900e-118
Identity = 180/205 (87.80%), Postives = 191/205 (93.17%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 615
            ISRDSRHKRRETGG+R+K+RKKRKFEMGRPAA TKLGHKRVHPVRCRGGNMKYRALRLD+GNFSWGTEV T KTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFK WYE+HYGV IG+KKGKKA P EEE  V+KS+HV+RKLA RQ DR L TLLD+QV+SGRFLACISSRPGQ GRCDGYILEGKELEFYQKMLAKKKSK
Sbjct:    3 ISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEEA-VAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
[Close]
BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 315 bits (806), Expect = 2.260e-103
Identity = 160/205 (78.05%), Postives = 175/205 (85.37%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEE--EEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKK 609
            ISRDSRHKRR TGGKRAKFRKKRKFEMGRPAA TKLG KRVHPVRC GGNMKYRA+RL+ G +SWGTE  + K RILDVVYNASNNELVRTKTLVKNA+V++DAHPFK WYE+HYGV IG KKGK+ P K+E  +E+  KS+HVQRK+A RQKDR L   LDDQ   GR LACISSRPGQ GR DGYILEGKELEFYQKMLA+KK
Sbjct:   23 ISRDSRHKRRHTGGKRAKFRKKRKFEMGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
[Close]
BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 306 bits (785), Expect = 1.760e-100
Identity = 155/209 (74.16%), Postives = 180/209 (86.12%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEE----EEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 615
            ISRDSRHKRRETGGKR + RKKRKFE+GRPAA TK+G  R+  VRCRGGN+K+RALRL+TGN+SWGTEV T KTRILDVVYNASNNELVRTKTLVK A+V +DA PF++WYE+HYG+ IGVKKGK+A   +     +EE  KS+HVQRKLA+RQK R L+TLLD+Q +SGR LACISSRPGQ GRCDGYILEGKELEFYQK+L++KK K
Sbjct:    3 ISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 298 bits (762), Expect = 3.760e-97
Identity = 151/202 (74.75%), Postives = 172/202 (85.15%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 606
            ISR+ RHKRRETGG+R K+RKKRKFE+GRPAAMTK+G KRVH VRCRGGN+K+RALRLD+GNFSWGTEV T K RILDV YNASNNELVRTKTLVK AIV++DAHPFK+WYE+HYGV IGVKKG+KA    +EE   KS  VQRKLA+RQK+R LE  LD Q +SGR LA I+SRPGQCGRCDG +LEG EL FYQ+ +AKK
Sbjct:    3 ISREGRHKRRETGGRREKYRKKRKFELGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAHA--DEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: A0A7S2JRG2_9STRA (40S ribosomal protein S8 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRG2_9STRA)

HSP 1 Score: 296 bits (758), Expect = 1.460e-96
Identity = 154/202 (76.24%), Postives = 168/202 (83.17%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 606
            I+R  R+KRRETGG+RAKFRKKRKFEMGRPAAMTK+G KRV  VRCRGGNMKYRALRLDTGNFSWGTEV T K RILDV YNASNNELVRTKTLVK AIV+VD HPFK WYESHYGV  G++  K   P  +E+E  KSNHVQRKLA+RQK R LE  LD Q++SGRFLA I+SRPGQ GRCDG ILEG EL FYQKM+ KK
Sbjct:    3 ITRTGRNKRRETGGRRAKFRKKRKFEMGRPAAMTKIGEKRVREVRCRGGNMKYRALRLDTGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLVDCHPFKTWYESHYGVKTGLRGAK---PPVDEDEAKKSNHVQRKLAARQKTRSLEPTLDSQLASGRFLAKITSRPGQSGRCDGVILEGPELAFYQKMMHKK 201
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: B8CB96_THAPS (40S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B8CB96_THAPS)

HSP 1 Score: 295 bits (756), Expect = 2.840e-96
Identity = 149/201 (74.13%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAK 603
            I+R+ +HKRRETGG+RA+FRKKRKFE+GRPAAMTK+G KR+H VRCRGGN+K+RALRLD+GNFSWGTEV T K R+LDVVYNASNNELVRTKTLVK AIV+VDAHPFK WYESHYGV IG+KKG+ A    EEEEV +S+HVQRKLA+RQK R LE  +D Q++SGR  A I+SRPGQ GRCDG ILEG EL FY K L K
Sbjct:    3 ITREGKHKRRETGGRRAQFRKKRKFELGRPAAMTKIGEKRIHTVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRVLDVVYNASNNELVRTKTLVKGAIVLVDAHPFKSWYESHYGVKIGIKKGQAAA---EEEEVKQSSHVQRKLAARQKGRSLEDAIDHQIASGRLYAKITSRPGQSGRCDGQILEGAELSFYLKQLKK 200
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: A0A6U3PIT0_9STRA (40S ribosomal protein S8 n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3PIT0_9STRA)

HSP 1 Score: 293 bits (750), Expect = 2.290e-95
Identity = 149/202 (73.76%), Postives = 172/202 (85.15%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 606
            I+R+ RHKRRETGG+R K+RKKRKFEMGRPAAMTK+G KRVH VR RGGNMK+RALRLD+GNFSWGTEV T K R+LDV YNASNNELVRTKTLVK AIV++DAHPFK WYESHYG+ IGVKKG  A     +++V KS+HVQRKLASRQK R+LE  +D+Q++SGR LA I+SRPGQ GRCDG +LEG EL FYQKM+ KK
Sbjct:    3 ITREGRHKRRETGGRREKYRKKRKFEMGRPAAMTKIGEKRVHGVRGRGGNMKWRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKSWYESHYGLKIGVKKGSTAL----DDDVKKSDHVQRKLASRQKGRELEQAIDNQMASGRLLAKITSRPGQSGRCDGIVLEGAELHFYQKMMHKK 200
[Close]
BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: M4BLW0_HYAAE (40S ribosomal protein S8 n=5 Tax=Peronosporaceae TaxID=4777 RepID=M4BLW0_HYAAE)

HSP 1 Score: 294 bits (753), Expect = 3.400e-95
Identity = 154/205 (75.12%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 615
            ISRDSRHKRRETGGKR +FRKKRKFE+GR  A TKLG KRVH VR RGG++K+RAL L+TGNFSWGTEV   KTRILDVVYNASNNELVRTKTLVK A+V+VDA PF++WYE+HYGV IG+KK   A   EEEEEV KS+HV RKLA RQ+ R+L++ +DDQV+SGR LA ISSRPGQ GR DGYILEGKELEFYQ+ LA KKSK
Sbjct:   39 ISRDSRHKRRETGGKRKQFRKKRKFEIGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGIKKN--AEKIEEEEEVKKSSHVMRKLAKRQRTRELDSKIDDQVTSGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKKSK 241
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BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: H3G699_PHYRM (40S ribosomal protein S8 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G699_PHYRM)

HSP 1 Score: 290 bits (742), Expect = 4.110e-94
Identity = 151/205 (73.66%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 615
            ISRDSRHKRRETGGKR +FRKKRKFE+GR  A TKLG KRVH VR RGG++K+RAL L+TGNFSWGTEV   KTRILDVVYNASNNELVRTKTLVK A+V++DA PF++WYE+HYGV IGVKK  +   K+EEEEV KS+HV RKLA+RQ+ R L+  +D+QV+SGR LA ISSRPGQ GR DGY+LEGKELEFYQ+ LA KKSK
Sbjct:    2 ISRDSRHKRRETGGKRKQFRKKRKFELGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLIDATPFRQWYEAHYGVKIGVKKNAE---KQEEEEVKKSDHVLRKLAARQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 203
[Close]
BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Match: B7FP80_PHATC (40S ribosomal protein S8 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP80_PHATC)

HSP 1 Score: 289 bits (740), Expect = 8.840e-94
Identity = 146/203 (71.92%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:    1 ISRDSRHKRRETGGKRAKFRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKK-GKKAPPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 606
            I+R+ RHKRRETGG+RAKFRKKRKFE+GRPAAMTK+G  R+HPVRCRGGNMK+RALRLD+GNFSWGTEV T K R+LDV YNASNNELVRTKTLVK AIV++DAHPFK WY+SHYGVTIG+KK G +   +   +   KS  VQ+KL SRQ +R L+++LD Q +SGR LA I+SRPGQ GRCDGYILEG EL FYQK +AKK
Sbjct:    3 ITREGRHKRRETGGRRAKFRKKRKFELGRPAAMTKIGEPRIHPVRCRGGNMKFRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKNWYDSHYGVTIGLKKTGGEDRTQPSVDLTEKSTQVQKKLKSRQANRSLDSVLDHQFASGRLLAKITSRPGQTGRCDGYILEGAELAFYQKQMAKK 205
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1247.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI1.900e-11887.8040S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2USH6_9STRA2.260e-10378.0540S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A836CLT8_9STRA1.760e-10074.1640S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A7S1Z304_TRICV3.760e-9774.7540S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
A0A7S2JRG2_9STRA1.460e-9676.2440S ribosomal protein S8 n=1 Tax=Leptocylindrus da... [more]
B8CB96_THAPS2.840e-9674.1340S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=... [more]
A0A6U3PIT0_9STRA2.290e-9573.7640S ribosomal protein S8 n=3 Tax=Lithodesmiaceae T... [more]
M4BLW0_HYAAE3.400e-9575.1240S ribosomal protein S8 n=5 Tax=Peronosporaceae T... [more]
H3G699_PHYRM4.110e-9473.6640S ribosomal protein S8 n=2 Tax=Phytophthora TaxI... [more]
B7FP80_PHATC8.840e-9471.9240S ribosomal protein S8 n=2 Tax=Phaeodactylum tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1247contigF-serratus_M_contig1247:237395..242047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue6.9e-82
Seed eggNOG ortholog2880.D7FHG3
Preferred nameRPS8
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2007@1,KOG3283@2759
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-25_002510.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons7
Model size1245
Cds size540
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.152894-UTR-F-serratus_M_contig1247:237394..2375691622929173.152894-UTR-F-serratus_M_contig1247:237394..237569Fucus serratus maleUTRF-serratus_M_contig1247 237395..237569 -
1690962736.1040041-UTR-F-serratus_M_contig1247:237394..2375691690962736.1040041-UTR-F-serratus_M_contig1247:237394..237569Fucus serratus maleUTRF-serratus_M_contig1247 237395..237569 -
1622929173.1728566-UTR-F-serratus_M_contig1247:237870..2383051622929173.1728566-UTR-F-serratus_M_contig1247:237870..238305Fucus serratus maleUTRF-serratus_M_contig1247 237871..238305 -
1690962736.1247504-UTR-F-serratus_M_contig1247:237870..2383051690962736.1247504-UTR-F-serratus_M_contig1247:237870..238305Fucus serratus maleUTRF-serratus_M_contig1247 237871..238305 -
1622929173.1895828-UTR-F-serratus_M_contig1247:238330..2383471622929173.1895828-UTR-F-serratus_M_contig1247:238330..238347Fucus serratus maleUTRF-serratus_M_contig1247 238331..238347 -
1690962736.1399996-UTR-F-serratus_M_contig1247:238330..2383471690962736.1399996-UTR-F-serratus_M_contig1247:238330..238347Fucus serratus maleUTRF-serratus_M_contig1247 238331..238347 -
1622929173.3103147-UTR-F-serratus_M_contig1247:241969..2420471622929173.3103147-UTR-F-serratus_M_contig1247:241969..242047Fucus serratus maleUTRF-serratus_M_contig1247 241970..242047 -
1690962736.2030666-UTR-F-serratus_M_contig1247:241969..2420471690962736.2030666-UTR-F-serratus_M_contig1247:241969..242047Fucus serratus maleUTRF-serratus_M_contig1247 241970..242047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.2040973-CDS-F-serratus_M_contig1247:238347..2384311622929173.2040973-CDS-F-serratus_M_contig1247:238347..238431Fucus serratus maleCDSF-serratus_M_contig1247 238348..238431 -
1690962736.1559248-CDS-F-serratus_M_contig1247:238347..2384311690962736.1559248-CDS-F-serratus_M_contig1247:238347..238431Fucus serratus maleCDSF-serratus_M_contig1247 238348..238431 -
1622929173.248138-CDS-F-serratus_M_contig1247:239325..2394571622929173.248138-CDS-F-serratus_M_contig1247:239325..239457Fucus serratus maleCDSF-serratus_M_contig1247 239326..239457 -
1690962736.1736572-CDS-F-serratus_M_contig1247:239325..2394571690962736.1736572-CDS-F-serratus_M_contig1247:239325..239457Fucus serratus maleCDSF-serratus_M_contig1247 239326..239457 -
1622929173.259308-CDS-F-serratus_M_contig1247:240331..2404301622929173.259308-CDS-F-serratus_M_contig1247:240331..240430Fucus serratus maleCDSF-serratus_M_contig1247 240332..240430 -
1690962736.1811976-CDS-F-serratus_M_contig1247:240331..2404301690962736.1811976-CDS-F-serratus_M_contig1247:240331..240430Fucus serratus maleCDSF-serratus_M_contig1247 240332..240430 -
1622929173.2762988-CDS-F-serratus_M_contig1247:241061..2411591622929173.2762988-CDS-F-serratus_M_contig1247:241061..241159Fucus serratus maleCDSF-serratus_M_contig1247 241062..241159 -
1690962736.1884065-CDS-F-serratus_M_contig1247:241061..2411591690962736.1884065-CDS-F-serratus_M_contig1247:241061..241159Fucus serratus maleCDSF-serratus_M_contig1247 241062..241159 -
1622929173.2908309-CDS-F-serratus_M_contig1247:241842..2419691622929173.2908309-CDS-F-serratus_M_contig1247:241842..241969Fucus serratus maleCDSF-serratus_M_contig1247 241843..241969 -
1690962736.1956668-CDS-F-serratus_M_contig1247:241842..2419691690962736.1956668-CDS-F-serratus_M_contig1247:241842..241969Fucus serratus maleCDSF-serratus_M_contig1247 241843..241969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1247.1874.1prot_F-serratus_M_contig1247.1874.1Fucus serratus malepolypeptideF-serratus_M_contig1247 238348..241969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1247.1874.1

>prot_F-serratus_M_contig1247.1874.1 ID=prot_F-serratus_M_contig1247.1874.1|Name=mRNA_F-serratus_M_contig1247.1874.1|organism=Fucus serratus male|type=polypeptide|length=180bp
MGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVHTCKTRI
LDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVTIGVKKGKK
APPKEEEEEVSKSNHVQRKLASRQKDRKLETLLDDQVSSGRFLACISSRP
GQCGRCDGYILEGKELEFYQKMLAKKKSK*
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mRNA from alignment at F-serratus_M_contig1247:237395..242047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1247.1874.1 ID=mRNA_F-serratus_M_contig1247.1874.1|Name=mRNA_F-serratus_M_contig1247.1874.1|organism=Fucus serratus male|type=mRNA|length=4653bp|location=Sequence derived from alignment at F-serratus_M_contig1247:237395..242047- (Fucus serratus male)
ATCTCAAGAGACTCGCGGCACAAGCGCCGTGAAACGGGCGGGAAGCGCGC
CAAGTTCAGGAAGAAGAGGAAGTTCGAGATGGGGCGCCCGGCGGCGATGA
CGAAGCTGGGCCACAAGCGCGTGCACCCCGTGCGCTGCCGCGGCGGCAAC
ATGAAGTACCGCGCTCTGAGACTCGACACGGGCAACTTCAGCTGGGGCAC
GGAGGGTAAGTTGTAGGGGTTCGAATACCACGGTGTGACTGTATCACGTA
CTGAAAAGATACTCTGTAGCCAAATTTGGCTGAAAGAGGCAACGATCGTA
AACGCCACGGGGAACGAATATTTGACTAAGTTGCGACCTACCCACATTTG
TTCAGTACCTTCCGTTCGTGCAGGGAATATAAAAAATGATGTAGTGATAT
ATTTGTTGTACTCAAATATATCGCTCGTTGTTACTCCTGAGTACTGCGCT
ACAACACTGTCACTGGGAGTGAACCACCTATATTTCCAGCTCGGACTGAT
GCTCCACTTGCGTTTTCGACAGGCTCACAACAGCATCCTGTAGACCCCGG
TGTTTTCATACCGACAATGACACTGGCTTCTCAATGGAGCGTTTATTTCT
GACTGTTTGACTCGATTTCTAGTCGAGTGATGAAACAACCTCAACAATTG
ATTCCTAGTCGGGAGAGTAGCGCGCGAGCCGCTCACTTTCAACGGGCTAA
AATAAAAACAGACGAAAGACCGCGCCTGGTACCCTACCCAGAGGTAATTT
TCTCGAGCGCTGTGTGTCGGATCAGCTGTAAGTTTGAGCACGTGCCCCGC
AACCAGAGCTACTGGTACCCGCGCCCCCGCGACTTCTTATTCCACGTCTT
AAAACGCATCCGCTTCCCTGGCGTGTTGGGTTTTCCAGTGCACACCTGCA
AGACCCGTATTCTTGACGTGGTGTACAACGCCAGCAACAACGAGCTGGTC
CGCACCAAAACCCTGGTGAAGAATGCCATCGTGGTGGTGAGCAAATCCCG
TTGGAATAAAAAGTTTTTTTCGCGTTTGCCCAGGAAAGAGTTGGGTGGGT
TTTGGTATGCGTTTTTTTACCGTCGAATGTTGGAAAACGCTTCGCGTCCA
GGTGTGGAGACTTTTTTTTTGGAGTACTTCACGGTGTCAAAGGAATCCCT
CTGAGCGCGGGGGACCTGGGCGGCGCTCGCACAGAGCTGCTCCGTGTTTG
ATTCAACCGACAGCCTAGTAGCTGGAGTTTCGAAAACTCTTCAGACGAAA
TTCGTTTTCACTCGCACCGACATCCTGTGTCCCAGTATTTTCCGTTGCAG
CTCTCCTCGCCCGAGTGGTCTAGTAGACAAACCTGCACGCCTGCTATTAA
TAGTGCGGAAGTCGTGAGTTCGATTCTTGCCAAAGTAGGATTTGTGTTCT
TTCATCCGTAACGGAAAGCGTGGGAACGTGAGTTAAGTAAAATCCAACCA
TTGGTTGACGAGTTGTAAGATTGCTGAACTTGCATCGCCATAAATAATCG
TAAGGCGTGAACCGGGGAGATATGGGAAGATCCTCAGTAACCATAGGCAG
CATGGTAATGAGGTCAGTGGCCTAAAGGTCGACGTCTGCGCGCTCCTCTT
TATCGACAACGTTACAGGTTGACGCCCACCCTTTCAAGAAGTGGTACGAG
AGCCACTACGGCGTCACCATCGGCGTTAAGAAGGGAAAGAAGGCTCCTCC
TAAGGAGGAAGAGGAGGTGGGGCGTGCAATTTCTTACCGCTTCCGGTTCT
TGTTTTGTTTTTCTTGCAGCCTGTGGAGCGTTGGCGTATGTTATAACTAT
GATTTGCATCTCCAACCTACTCGGGCTTGGAAAGCGTTTTCGCTCTTAAA
CGTCTCGGGTTGTTTGAATCCTGCCTATTAATAACATGTAGATGAAAAGG
GTTCTACCAAAATAATCTCGAACTAATATTCTTGAGCCTAGTGCTTACCC
GTTTTCCCGTTGGATATTTTTGGGGGGGAAACAGGCATTTATTGGCTAGG
CACTATACCCCAAAAATCGCGGTATTCTCAAGTTCCTATTGGCTTACGTT
ATAACCTCAGTTTAGTATATTATATATAGCTGACCCCGAACTGGGGCAGG
AAAGGTCCAATCCTTGGGGCGGGAATCACACGATAAACGAATTGCTCTAC
TGTGACGCGTTTTGTTGACGTGTTGTCGAAATGGCCTTCCCCAGAAATTT
CTCGCCGTGTTAATTAATCTTTCGGTTCAGTAGGCGGGTTTTGTAGAGAG
GTGCAAGCAAGAGGCGTTTCAGCAGCCAATGATTTCATCATCGCTTTCGC
TCTTGGCACCAGAAGCCAGATATGCGGTTACGCTTTGTGGTTTCTCGATT
CATCCAATTTTGTGTTTAATACAAGATCTCTCGAGTTCGCTGCGGTCTGT
TAGGTTGTCAAAACTGCCGTGACATGGTAACGGATTCCATCTTCTGATGT
TTGTCGTATGCTGTCTTTTCTGCTTGCCCCCCCACACACATACATACACT
CATGTATATTTTTCTCTCCCCGTTTCCCTCCCACCTATCCACCCGTATTT
TTTCGTCCACGATACTATCCCATGGCGTTGTGTTGTTCAGGAGGTGTCCA
AGTCAAACCACGTCCAGCGCAAGCTCGCCAGCCGCCAGAAGGATCGTAAG
CTTGAAACTCTTCTCGACGACCAGGTCTCCTCCGGCCGCTTCCTGGCTTG
CATCTCGTCCCGCCCTGGACAGGTGCGTCGTTCATACCCAGGATCGGTTC
AAAGCTCTCTCAGAGAACGCCTCCGGATACAAGACTCCTCCCGATATATC
CCTACTAATTTCTTTGGTAACGAAGACTATCAACTGGCTTTTCAACTTCC
CCCGCCCCCCCCCTCCGAAAAAAGCGCCTGGCTCAGTAATACCAAGATTG
TGGAATTTTGCCAGTTCCTACTCATGCAATATACCCTCTAATGCGGTATA
CTAGTAGTCGGTAAAGCCCTACCAGGTGCATTATATGGTAATAGGCAATT
TTGCGCTGTCCGTTCACTGTATCGAACTAAATGTTTTTTCCCCGAAACAA
TCTTGTCCCCAGAAGGCCTGTTGGGCGAAACAAAGTCTGGTGACCTAGCT
TGGATTGGTTGGATAAAATGTGTCACAAATTTGACGGGGAAGGACAAAAC
GATTGTCCGTTTTGTGGTCGATGGGGAATCCCTATCCGGCTCCTCTTACT
TTTGTCTGTGGTGTCGAGCGCACGCCACGAAAATCTGCGTCGGTTTTCCC
TTCTATGCGAGACAGTGACATCCTGGGTATGAATCTGGAGAGCGATCGAA
ACCTATTTCTCCCTTCCACTAGGCTTTTTGTCTTGAATAATTCGGTTTTG
GAATCGTTCTTTACCGACCGACGGACACCATAGCGTGCTAACCTCTCGGG
AGTCATTATCGATAGAACTCGTTTCTACCACTGATCGAAAGCGTCTATTT
TCAACTCAACAAGTTCTTTGCCAAACCTAAATTTCTTAGTGTTGAAATAC
CGCGCGTCTCGTCCCATCTCTCCTCTTCGTTTTGGAACGTTCCGTGGAAC
GAACGTTGCGTGATGCCATTTCCCGTACCTACTTCCTACCTTTGTGTGTG
GTGTACCGCTGCGCAGTGTGGCCGCTGCGACGGTTACATCCTGGAGGGCA
AGGAGCTGGAGTTTTACCAGAAAATGCTCGCCAAGAAGAAGTCGAAGTAA
ACGCCATCGTTGCACGGGGGCGGACGTCTCTGTTTTCCTCGTCGGCGCGC
GTCTCTGTTTTCCTCGTCTCGTCTTTTGCTAAGACGATGTGACTCGGGGG
CTACTAAAGAAGCGTTCGATCCCGGAAGGCGTATGTTCTTTCACGTTGTT
AATGTTGTTCCATGCGCTTTCGAGCAGTCGCTCTTCTGTTGGCCGGCGTT
GAGCGGTTAGCGTGGGCGGTTATGGTTGGTGGCAATAGGCGTGACGAGAG
GGATGTGCATGGCGGAGACGGAGCAACTAAATGAAATCATCTAAAACGAA
AAACAAAACTCTGGCAAAAAAAAACAGTGTTCAACGCGCATACCAAACGT
TGCGAGTCAAAACGAAAATATTGCCCGTGGCTCTTGTCAATCACCCATTT
CCCCTCTACGACTTGCGGGCCCCAATCCATCCACCTGTGGCATACTCGTG
GATCGGCCAGAGTGTGGCAATACTAGTTGTTGCGAGCGTTTAGCGAGCTT
CTAATCTGATAGCTGTATCAATTTGAGCTCGGGTGTATCAAAATACGGGG
CACTTTGACCAATCATGAATGTGCCGTATGTTCCTTTTCGTAATGTCGAA
AATGTTACTCCGTCAAAAGTTTTCTCTTAATGGGAGACAGAAGAAAGAAA
TTTCTGTCGTATGGAAGCGTATGGGAGACAGAAAAATGAAATTTCACATT
GAACCAACACCTGTGTTAAGCTGACGATAGTTACAGGACTATCCTTTAGC
GAGCGTATAGCGATAGCTACCCTATCTTAATATACTGTTTCGCCCGAACC
TTGTGAATTTTATGGCATAGCGTGGCAGCCCGTACTTGTTTGCTGCTGTT
CCGGGACGGAATATGGGTTGACGCTCTACACCGTCGGTTCTGATTTTTGT
TGCATTATATCTGGTACTACTGGTGTCCCCTTCATCGCACGTATTTCATA
CTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1247:237395..242047-

>mRNA_F-serratus_M_contig1247.1874.1 ID=mRNA_F-serratus_M_contig1247.1874.1|Name=mRNA_F-serratus_M_contig1247.1874.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig1247:237395..242047- (Fucus serratus male)
ATGGGGCGCCCGGCGGCGATGACGAAGCTGGGCCACAAGCGCGTGCACCC
CGTGCGCTGCCGCGGCGGCAACATGAAGTACCGCGCTCTGAGACTCGACA
CGGGCAACTTCAGCTGGGGCACGGAGGATGGGGCGCCCGGCGGCGATGAC
GAAGCTGGGCCACAAGCGCGTGCACCCCGTGCGCTGCCGCGGCGGCAACA
TGAAGTACCGCGCTCTGAGACTCGACACGGGCAACTTCAGCTGGGGCACG
GAGGTGCACACCTGCAAGACCCGTATTCTTGACGTGGTGTACAACGCCAG
CAACAACGAGCTGGTCCGCACCAAAACCCTGGTGAAGAATGCCATCGTGG
TGTGCACACCTGCAAGACCCGTATTCTTGACGTGGTGTACAACGCCAGCA
ACAACGAGCTGGTCCGCACCAAAACCCTGGTGAAGAATGCCATCGTGGTG
GTTGACGCCCACCCTTTCAAGAAGTGGTACGAGAGCCACTACGGCGTCAC
CATCGGCGTTAAGAAGGGAAAGAAGGCTCCTCCTAAGGAGGAAGAGGAGG
TTGACGCCCACCCTTTCAAGAAGTGGTACGAGAGCCACTACGGCGTCACC
ATCGGCGTTAAGAAGGGAAAGAAGGCTCCTCCTAAGGAGGAAGAGGAGGA
GGTGTCCAAGTCAAACCACGTCCAGCGCAAGCTCGCCAGCCGCCAGAAGG
ATCGTAAGCTTGAAACTCTTCTCGACGACCAGGTCTCCTCCGGCCGCTTC
CTGGCTTGCATCTCGTCCCGCCCTGGACAGGAGGTGTCCAAGTCAAACCA
CGTCCAGCGCAAGCTCGCCAGCCGCCAGAAGGATCGTAAGCTTGAAACTC
TTCTCGACGACCAGGTCTCCTCCGGCCGCTTCCTGGCTTGCATCTCGTCC
CGCCCTGGACAGTGTGGCCGCTGCGACGGTTACATCCTGGAGGGCAAGGA
GCTGGAGTTTTACCAGAAAATGCTCGCCAAGAAGAAGTCGAAGTAATGTG
GCCGCTGCGACGGTTACATCCTGGAGGGCAAGGAGCTGGAGTTTTACCAG
AAAATGCTCGCCAAGAAGAAGTCGAAGTAA
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