mRNA_F-serratus_M_contig749.18727.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18727.1
Unique NamemRNA_F-serratus_M_contig749.18727.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig749.18727.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.640e-12
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   70 VYLRNDLPRPLRVALSQESAGEPNTMVPVGDEVCLPLPVLDSRVLRLWRSPRALVGGQALRKWL 261
            V L+NDLPRPLRVALS E+   PNT+VPV           D+ VLRLW+SPR LVGG+AL++ L
Sbjct: 1190 VALKNDLPRPLRVALSPENENHPNTLVPV-----------DAEVLRLWKSPRTLVGGEALKRAL 1242
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB77_ECTSI8.640e-1257.81SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:175069..176296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932257.1259358-CDS-F-serratus_M_contig749:175068..1751371622932257.1259358-CDS-F-serratus_M_contig749:175068..175137Fucus serratus maleCDSF-serratus_M_contig749 175069..175137 +
1690964221.5861943-CDS-F-serratus_M_contig749:175068..1751371690964221.5861943-CDS-F-serratus_M_contig749:175068..175137Fucus serratus maleCDSF-serratus_M_contig749 175069..175137 +
1622932257.1462781-CDS-F-serratus_M_contig749:176074..1762961622932257.1462781-CDS-F-serratus_M_contig749:176074..176296Fucus serratus maleCDSF-serratus_M_contig749 176075..176296 +
1690964221.6030478-CDS-F-serratus_M_contig749:176074..1762961690964221.6030478-CDS-F-serratus_M_contig749:176074..176296Fucus serratus maleCDSF-serratus_M_contig749 176075..176296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18727.1prot_F-serratus_M_contig749.18727.1Fucus serratus malepolypeptideF-serratus_M_contig749 175069..176296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18727.1

>prot_F-serratus_M_contig749.18727.1 ID=prot_F-serratus_M_contig749.18727.1|Name=mRNA_F-serratus_M_contig749.18727.1|organism=Fucus serratus male|type=polypeptide|length=97bp
VKFIACPAPTPSVLDMAMQLQTNVYLRNDLPRPLRVALSQESAGEPNTMV
PVGDEVCLPLPVLDSRVLRLWRSPRALVGGQALRKWLCEKNKTQEAR
back to top

mRNA from alignment at F-serratus_M_contig749:175069..176296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18727.1 ID=mRNA_F-serratus_M_contig749.18727.1|Name=mRNA_F-serratus_M_contig749.18727.1|organism=Fucus serratus male|type=mRNA|length=1228bp|location=Sequence derived from alignment at F-serratus_M_contig749:175069..176296+ (Fucus serratus male)
GTGAAGTTCATCGCGTGCCCTGCACCGACACCCTCCGTCCTCGACATGGC
CATGCAGCTCCAGACCAACGTGAGGAGAGGAGCGCGAAGGGGTCGAACTG
AAAAAGCGGCGATTTATTTTTCTTCTTTTTTTGGGGGGGGGGGGGAGGGG
GCGGTTCTTTCTTTGATTTATTAGTATTTTTTTCATCTTGTGTTTTTTCC
CCCTTTTTTTTCCCCTTATTTCCCTTCTTCTTTTTTTCTCTTTTTTATTA
CTTCTACGCAGTATGTTTACGTTTTTTTTTCTTGCTTTGGTACGAGAAGC
CAGACGAACGGACAAGTAGGATGGCGAAAACCGAAGAAAACTGGGGAAGT
GAGGACAGACAGTTAAGGGGATGGCATCATTTGACACACAAAATCATCTC
AACCCAAACGCTGACTGATAGATATAAGAGTTCGCGGGTTCGCGGGTGCG
CGGGTGGGGCGTACTCATGATCGGCCGTCCACCTCATTACTTTTGATGTT
GCTACTGCTGCTGTTCTGTTTACTCCGCCCCACCCCCACCCCCCACCCCC
CTTCGTTCTGGGCCTCGCCTTCTCCCTCCTTCTTGACTATTAATAGTACT
AAACATCTGGTGTTAGGTTTGTTTTGTTTTGCTTCGTTTTCGTTTTTATG
CTTTCGGTGAAGCCGCGGCCCTTCGTCCAATCATCCTTCGATATGCAGGC
GCCCCGATAGCCACACGTGTTTCTTTTTTGTATACATTTTTGTTTATTTT
GGAGATGTCGCTTTTTCCGAATATTTTTGTACCATTTTCGCTTTCTCTTT
GTATGGAGAGTACGTCGTACATTCTTTCCTTCCGGATGGTGTTTTCCTAC
TTTGTGGCCACGGGCTTGATTTTTGACATCAGCTAATGTGAGAATTCAAT
CGATCAAATCAATCAATCCCCCCTTGTCCCACAACCCTGCGGTTGCCTCC
CTTTCAAACGTACAAATATACACACGCAAACACAAATACACACACGATAA
ACTAAGGTGTACCTAAGGAACGACCTGCCGAGGCCTCTGCGAGTTGCGTT
GAGCCAAGAGAGCGCGGGAGAGCCGAATACCATGGTACCCGTGGGCGACG
AGGTGTGCCTCCCCTTACCCGTCTTGGATTCCCGCGTGCTGCGCCTCTGG
CGGTCGCCTCGCGCCCTGGTGGGGGGACAAGCGCTCCGGAAATGGTTGTG
CGAGAAAAACAAGACGCAAGAGGCAAGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig749:175069..176296+

>mRNA_F-serratus_M_contig749.18727.1 ID=mRNA_F-serratus_M_contig749.18727.1|Name=mRNA_F-serratus_M_contig749.18727.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig749:175069..176296+ (Fucus serratus male)
GTGAAGTTCATCGCGTGCCCTGCACCGACACCCTCCGTCCTCGACATGGC
CATGCAGCTCCAGACCAACGTGAAGTTCATCGCGTGCCCTGCACCGACAC
CCTCCGTCCTCGACATGGCCATGCAGCTCCAGACCAACGTGTACCTAAGG
AACGACCTGCCGAGGCCTCTGCGAGTTGCGTTGAGCCAAGAGAGCGCGGG
AGAGCCGAATACCATGGTACCCGTGGGCGACGAGGTGTGCCTCCCCTTAC
CCGTCTTGGATTCCCGCGTGCTGCGCCTCTGGCGGTCGCCTCGCGCCCTG
GTGGGGGGACAAGCGCTCCGGAAATGGTTGTGCGAGAAAAACAAGACGCA
AGAGGCAAGGGTGTACCTAAGGAACGACCTGCCGAGGCCTCTGCGAGTTG
CGTTGAGCCAAGAGAGCGCGGGAGAGCCGAATACCATGGTACCCGTGGGC
GACGAGGTGTGCCTCCCCTTACCCGTCTTGGATTCCCGCGTGCTGCGCCT
CTGGCGGTCGCCTCGCGCCCTGGTGGGGGGACAAGCGCTCCGGAAATGGT
TGTGCGAGAAAAACAAGACGCAAGAGGCAAGG
back to top