mRNA_F-serratus_M_contig749.18723.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18723.1
Unique NamemRNA_F-serratus_M_contig749.18723.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 5.060e-62
Identity = 108/137 (78.83%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    4 LDLVAGGARALTWGSDGYRLVSVG------AEVGGTGSVQGIVAFDFFRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
            LDL+AGGARAL+W  +GYRL+SVG      A VGG    QGIVAFDF RRARSNL+S++L+LQGSDRIALVDSQPWSAQVLLWRVLPVHPGYL++NAPLRHVSTSRAGT+VAVAG+RG AVYSRPTNRWRLFGNI +
Sbjct:  642 LDLIAGGARALSWEREGYRLMSVGSAVGAAAGVGGDAGAQGIVAFDFLRRARSNLSSSLLSLQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYVAVAGSRGFAVYSRPTNRWRLFGNIEQ 778          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.020e-15
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  109 IVAFDFFRRAR-SNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
            IV ++  R AR +  A   L LQG + +A ++ +PW+ ++L W  + V P Y + N P+  V+ S +G  +AVAG RGLA+YSRP  RWRLFGN+ +
Sbjct:  498 IVRYEMLRWARHAAFAHTALCLQGVNTLAFLEQRPWNPRLLSWAHVTVPPAY-SVNVPVTLVAQSPSGQQLAVAGKRGLALYSRPQRRWRLFGNVHQ 593          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A1Q3DCI7_CEPFO (RIC1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DCI7_CEPFO)

HSP 1 Score: 65.5 bits (158), Expect = 8.900e-10
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   22 GARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDF----FRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            G   + W   GYRL ++        S + I+AF F      R  S +      + G DR+ +V S+      LL   LPV   Y++ N P++HVS S+ G ++AVAG  GL +Y     +WR+FG++
Sbjct:  375 GTSVMQWDEFGYRLYAIEER-----SSERILAFSFGKCCLNRGVSGMTYVRQVIFGEDRLLVVQSEDTDELKLLHLNLPV--SYISQNWPVQHVSASKDGMYLAVAGLHGLILYDIRLKKWRVFGDV 494          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A7S1T8D7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8D7_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  160 VLALQGSDRIALVD-------SQPWSA------------QVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            V  LQG+DR+ L+        S  WS             + L+ R L V   Y+A+N PL H + S  G  +A AG RGLA+YSR + RWRLFG++
Sbjct:   21 VNVLQGADRLLLITESQDAAASSSWSQWNVGGQETNHIPEDLVVRHLRVPSAYMASNWPLVHAAVSADGYDIAAAGTRGLALYSRRSGRWRLFGDV 116          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A2V0P0B4_9CHLO (RIC1 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0B4_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-9
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            +P+   YLAAN PL H + S +G  VAV+G RGLAVYSR T RWRLFGN+
Sbjct:  610 VPLPASYLAANWPLVHAAASPSGGDVAVSGRRGLAVYSRRTERWRLFGNV 659          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: L8HHF1_ACACA (RIC1 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHF1_ACACA)

HSP 1 Score: 63.2 bits (152), Expect = 5.800e-9
Identity = 41/125 (32.80%), Postives = 59/125 (47.20%), Query Frame = 1
Query:   22 GARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDFFRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
            G  +L+WG +GYRL         T S  G    +F       +    L L G   + L      + + + W+ + V   Y+  N P+ HV+ S     VAVAG RG+A+YS   +RWRLFG+  E
Sbjct:  378 GIASLSWGREGYRLFLTSPPDDSTASPAGFEQINFA------MEEERLVLWGEAELLLYCPHELN-ETMKWQRIQVPQTYMTDNWPIMHVAVSPESGDVAVAGRRGVAIYSAAVHRWRLFGDRSE 495          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A250X4W9_9CHLO (RIC1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4W9_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 5.820e-9
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  172 QGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            QGS   + + +Q   A + +  + PV   Y+  N PL H S S  G H+AVAG RGLA+YSR  N+WRLFG++
Sbjct:  576 QGSPAGSGMPNQQQGADLTVSHI-PVPLSYIGPNWPLLHTSVSTNGLHIAVAGLRGLALYSRAANKWRLFGDV 647          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A8J4C0E2_9CHLO (RIC1 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0E2_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.080e-8
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:  241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            LPV   Y++AN PL+  + S +GT +AVAG  GLAVY+RP+ RWRLFG+I
Sbjct:  561 LPVPHSYVSANWPLQRSAISASGTDIAVAGRNGLAVYNRPSERWRLFGDI 610          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A1I8MER0_MUSDO (Protein RIC1 homolog n=2 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MER0_MUSDO)

HSP 1 Score: 60.1 bits (144), Expect = 6.910e-8
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query:  196 VDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGN 387
            VD     A+   W VL +   Y+A N P+R+ +    G H+AVAG  GLA YS PT +W+LFGN
Sbjct:  477 VDISSILAESKYWTVLQLPQTYVATNWPIRYSAIDAEGVHIAVAGRTGLAHYSMPTKKWKLFGN 540          
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A0D2LPC2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LPC2_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 8.560e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
            +P+  GY+AA  PL H + S +G  VAV+G RGLAVY R   RWRLFG++
Sbjct:   82 VPLPAGYVAAGWPLVHAAASASGADVAVSGRRGLAVYGRHAERWRLFGDV 131          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB77_ECTSI5.060e-6278.83SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CZK3_9STRA2.020e-1543.30RIC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A1Q3DCI7_CEPFO8.900e-1033.07RIC1 domain-containing protein n=1 Tax=Cephalotus ... [more]
A0A7S1T8D7_9CHLO1.780e-939.58Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2V0P0B4_9CHLO2.310e-962.00RIC1 domain-containing protein n=1 Tax=Raphidoceli... [more]
L8HHF1_ACACA5.800e-932.80RIC1 protein n=1 Tax=Acanthamoeba castellanii str.... [more]
A0A250X4W9_9CHLO5.820e-945.21RIC1 domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A8J4C0E2_9CHLO1.080e-858.00RIC1 domain-containing protein n=2 Tax=Volvox reti... [more]
A0A1I8MER0_MUSDO6.910e-845.31Protein RIC1 homolog n=2 Tax=Musca domestica TaxID... [more]
A0A0D2LPC2_9CHLO8.560e-854.00Uncharacterized protein (Fragment) n=1 Tax=Monorap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:126689..127845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue3.4e-54
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-27_004900.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size397
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18723.1prot_F-serratus_M_contig749.18723.1Fucus serratus malepolypeptideF-serratus_M_contig749 126689..127845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932256.3149707-CDS-F-serratus_M_contig749:126688..1268621622932256.3149707-CDS-F-serratus_M_contig749:126688..126862Fucus serratus maleCDSF-serratus_M_contig749 126689..126862 +
1690964221.1469975-CDS-F-serratus_M_contig749:126688..1268621690964221.1469975-CDS-F-serratus_M_contig749:126688..126862Fucus serratus maleCDSF-serratus_M_contig749 126689..126862 +
1622932256.3307645-CDS-F-serratus_M_contig749:127213..1272851622932256.3307645-CDS-F-serratus_M_contig749:127213..127285Fucus serratus maleCDSF-serratus_M_contig749 127214..127285 +
1690964221.160277-CDS-F-serratus_M_contig749:127213..1272851690964221.160277-CDS-F-serratus_M_contig749:127213..127285Fucus serratus maleCDSF-serratus_M_contig749 127214..127285 +
1622932256.3531082-CDS-F-serratus_M_contig749:127695..1278451622932256.3531082-CDS-F-serratus_M_contig749:127695..127845Fucus serratus maleCDSF-serratus_M_contig749 127696..127845 +
1690964221.1792977-CDS-F-serratus_M_contig749:127695..1278451690964221.1792977-CDS-F-serratus_M_contig749:127695..127845Fucus serratus maleCDSF-serratus_M_contig749 127696..127845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18723.1

>prot_F-serratus_M_contig749.18723.1 ID=prot_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MLDLVAGGARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDFFRRARSNL
ASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTS
RAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE
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mRNA from alignment at F-serratus_M_contig749:126689..127845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18723.1 ID=mRNA_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=mRNA|length=1157bp|location=Sequence derived from alignment at F-serratus_M_contig749:126689..127845+ (Fucus serratus male)
ATGTTAGACCTCGTGGCCGGGGGCGCGCGAGCGCTAACGTGGGGCAGCGA TGGGTATCGGCTCGTGTCGGTGGGGGCGGAAGTCGGCGGGACAGGGTCCG TGCAAGGGATCGTGGCTTTCGATTTCTTCAGAAGGGCCAGATCTAACCTC GCCAGCGCCGTTCTTGCTCTCCAGGCACGTAATGAAACATTGTCCATCTT AAGCACTTGAAATGCGTAGCTCTAGAAACGACGCGTGCGTCATGTGACGT TCCCGGGATCAGGTTATCTTAAAAGGGAGTGGGGGCGTGCCGCCATTCAT ACACTTGCAAGCGACCAAAATATCATCAGATCGGGTGTAACTCCTTCGCC GAGCGTAGTCGGTTCGAGGTCTGTGAGCTCCGGGACAGGTTCAGATAAAT ACACCGAGATTCCAGCCACCGCTATCGCAAAGGACATGGGTTCAGCAGTG TTGCTTGTTATAAACATCCCCTGCTTCACCGTCAAGTCCTTGCCTTTCGC CCGTTATTTGTTTTATCTTTGCTAGGGATCGGATCGGATCGCTCTGGTGG ACTCGCAGCCTTGGAGTGCTCAAGTCCTGCTGTGGAGGGTGCTGCCGGTG AGGCACGAATCGTGACATGCGTTCGTTGCACCGAGAGTGCTGTAAACTGA AAAATAAAAGGAAGAGAGGAGCAAAGGGGGCGGGGATGCCCTTGGACCTC ATTTTCTATGCGCGTGCTCCAACAACGACCTGACCTTCTCTGGCTGCCCG TGCCGCGAAATGATCTTCGCGTCGCTCTTTGGCCTATATTTGATCCTTGT TATTGGTATTTGGGGGGGGGTCGGGGGGGGGGGCAAGGGGGGGACGATGG GTTGAGAGAACCACGCACGAGACGGAAGACGGGAACAAACCAGCGCAGTA TGAGATACTAGCAATAATATGCCAAGAGCCCAAACGAACGAGCTCGTCCG TGGCGCTCCAGCTCACCCCCAAGATCGCGATCATTGCCGCGATCACCCCC TGATCAGGTCCACCCGGGTTACCTTGCGGCTAATGCCCCCCTGAGACACG TAAGCACGAGCAGGGCGGGGACTCACGTCGCGGTGGCGGGGGCGCGCGGG CTGGCGGTGTACAGCCGGCCGACCAACCGCTGGCGGCTGTTCGGGAACAT CCGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig749:126689..127845+

>mRNA_F-serratus_M_contig749.18723.1 ID=mRNA_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig749:126689..127845+ (Fucus serratus male)
ATGTTAGACCTCGTGGCCGGGGGCGCGCGAGCGCTAACGTGGGGCAGCGA
TGGGTATCGGCTCGTGTCGGTGGGGGCGGAAGTCGGCGGGACAGGGTCCG
TGCAAGGGATCGTGGCTTTCGATTTCTTCAGAAGGGCCAGATCTAACCTC
GCCAGCGCCGTTCTTGCTCTCCAGATGTTAGACCTCGTGGCCGGGGGCGC
GCGAGCGCTAACGTGGGGCAGCGATGGGTATCGGCTCGTGTCGGTGGGGG
CGGAAGTCGGCGGGACAGGGTCCGTGCAAGGGATCGTGGCTTTCGATTTC
TTCAGAAGGGCCAGATCTAACCTCGCCAGCGCCGTTCTTGCTCTCCAGGG
ATCGGATCGGATCGCTCTGGTGGACTCGCAGCCTTGGAGTGCTCAAGTCC
TGCTGTGGAGGGTGCTGCCGGGATCGGATCGGATCGCTCTGGTGGACTCG
CAGCCTTGGAGTGCTCAAGTCCTGCTGTGGAGGGTGCTGCCGGTCCACCC
GGGTTACCTTGCGGCTAATGCCCCCCTGAGACACGTAAGCACGAGCAGGG
CGGGGACTCACGTCGCGGTGGCGGGGGCGCGCGGGCTGGCGGTGTACAGC
CGGCCGACCAACCGCTGGCGGCTGTTCGGGAACATCCGCGAGGTCCACCC
GGGTTACCTTGCGGCTAATGCCCCCCTGAGACACGTAAGCACGAGCAGGG
CGGGGACTCACGTCGCGGTGGCGGGGGCGCGCGGGCTGGCGGTGTACAGC
CGGCCGACCAACCGCTGGCGGCTGTTCGGGAACATCCGCGAG
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