mRNA_F-serratus_M_contig7463.18697.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7463.18697.1
Unique NamemRNA_F-serratus_M_contig7463.18697.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI)

HSP 1 Score: 162 bits (411), Expect = 4.540e-45
Identity = 97/248 (39.11%), Postives = 140/248 (56.45%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARA--FDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL  + R  + E LL  S  G L +G +   A  F  S   +  +W++ +    +G++ +N+ +   G+ GRK+I ID    K+ E+PL+ RT  R++AK L +S+ T+   +K   +R+ S  +KP L++E KK R+++ L  +   + G     FD M N V +DEK  F  +  +RYYL   ED PV   + K  I KVMFLA V RPR D   N  F GKIGIFPF  + PA+R S+NR AGTM
Sbjct:   17 NLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDP--RKVSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTM 261          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI000B8F2756 (uncharacterized protein LOC110913170 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F2756)

HSP 1 Score: 157 bits (396), Expect = 7.460e-42
Identity = 98/247 (39.68%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG-VMDINLRNNRGGHSGR-KRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            L    R  + E +L  S  GKL  G I D A  F  S   V  +W +   Q   G ++D++    R  H  + KRI I+   +++ ++ L+ RT  R++AK L +S+ T+   +K   LR  +  +KP L+EE KK+R+++ L  +         +D M NVV +DEK  +  K  + YYL  GED P+ K + K  I KVMFLA V RPR DT+ N  F GKIGIFPFT+  PA+R+S+NR AGTM
Sbjct:   13 LTNSERRTIYEVILEQSNDGKLKYGSISDVASHFSVSTRTVSRIWHQARFQVQHGYLVDVS----RKPHIAKQKRIQINF--DQVAQIALRRRTNIRSIAKALNVSKSTVHRRIKEGELRPHTNAIKPNLTEENKKERLEFCLSMITPSLSNPSFYD-MFNVVHIDEKWFYMSKPSKSYYLVPGEDEPLRKCKSKKFITKVMFLAAVARPRFDTLGNEIFSGKIGIFPFTKLEPAKRSSKNRVAGTM 252          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A397CQQ2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CQQ2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.070e-40
Identity = 88/251 (35.06%), Postives = 136/251 (54.18%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG----VMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLK-HLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL +  R  +I  LL+ S GGK   G ++  A++F C R  V  VW  ++    +G    +        +G    + +   +     ++ VP   +   R +A   G+ + T+  ++K +  LR  S +L+P+L+E+ K++R+ +AL +V+  H     FD M +VV VDEK  F  KN  ++Y+ + E +P  + + K  I KVMFL  V RPR D    R FDGKIG++PF  +APAQRNS+NR  GTM
Sbjct:   20 NLTDAERQAMINMLLASSNGGKRKYGSVKGVADQFNCHRTTVSAVWNSWKAACAEGGSKMIASPPTSRMKGNCGAKTKWSAEVIEAAIKSVPFHKQQTTRALAFHSGVPRSTILRHMKRNRRLRCKSSYLRPLLTEDNKEERMKFALSFVKKNH----VFDDMHDVVHVDEKWFFLTKNKGKFYVYDDETLPHRQSKSKRFITKVMFLCAVARPRYDISIRRMFDGKIGMWPFVLKAPAQRNSKNRPRGTM 266          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI001036D506 (uncharacterized protein LOC114270614 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036D506)

HSP 1 Score: 148 bits (373), Expect = 5.530e-40
Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL   +R  + E LL  S  GKL RG       KF      V  +W+R      +G++ +N+ +++  +SGRKR+ ++    K+ E+PL+ RT  R+++K L L + T+   +K   +R  S  LKP LSEE K+ R+ + L  +      G   F++M + V +DEK  +  K  +RYYL   E+ P    + K  I KVMFLA V RPR D   N  F GKIGI+PFT + PA++NS+NRAAGT+
Sbjct:   27 NLTNHLRQSIFETLLIRSKDGKLKRGCQTKVVAKFSVHVKTVRRIWQRGIACMENGLV-VNV-SSKLTNSGRKRVQLNFG--KVAEIPLRRRTNIRSLSKTLNLPKSTVHRRIKEGKIRPHSNALKPYLSEENKRARLRFCLSMLEPNSLQGQPMFNSMYDYVHIDEKWFYISKEAERYYLLLEEEEPHRCCKSKRFITKVMFLAAVARPRFDENKNEEFSGKIGIWPFTYKEPAKKNSKNRAAGTL 269          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS)

HSP 1 Score: 152 bits (383), Expect = 7.330e-40
Identity = 92/247 (37.25%), Postives = 136/247 (55.06%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGAR-AFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL ++ R  ++E L S S  GKL RG +++ A  +      V  + ++       G+  +++  N  G  GRKR+ +D    K+  +P   RT  R++A+ L + + T+   +K   +R  +  LKP LSEEGK+ R+ + L  +      ++  F  M N V +DEK  F  K  +RYYL   E+ P+   + K  I KVMFLA V RPR DT  N+ F GKIGIFPFT + PA+R S+NR AGT+
Sbjct:   17 NLTDQQRREILEILFSKSASGKLKRGCLKEVAAMYSVDPRTVRQIVQKANSCIAKGLT-VDVSPNLRGRVGRKRVQLDL--NKIAALPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTL 260          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI0019D5B331 (uncharacterized protein LOC120641424 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5B331)

HSP 1 Score: 150 bits (378), Expect = 1.970e-38
Identity = 93/248 (37.50%), Postives = 137/248 (55.24%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV--RDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            +L    R ++ E LL  S  GKL R   +  AE F  +R+ V  +WRR +Q + +G+  +++ + +  +SGRK++++D  +  +  +PL  R   R++AK  G+ + T+    K   LR  S  LKP L EE KK+R+ W L  +  R      +  D M+N++ +DEK     K    YYL   E+ P   V + + I KVMFL  V +PR D   N  FDGKIGI+PF R+ PAQR S NRA GT+
Sbjct:  133 DLSATQRQQIYEALLVRSNHGKLRRNATKIVAELFNVNRHAVWRIWRRVKQCRANGL-PVDISSRKPKNSGRKKVEVDLSH--IAAIPLCKRNTIRSLAKAAGIKKSTMHQLFKDGLLRRHSNTLKPYLKEENKKQRLRWCLSMLDQRTLQTEPKFID-MENIIHLDEKWYNGTKKDNTYYLLAQEEDPYRTVHNTNCIHKVMFLTAVTKPRYDNAGNCTFDGKIGIWPFVRKEPAQRRSGNRARGTL 376          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: Q75LI7_ORYSJ (Transposon protein, putative, Mariner sub-class n=5 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75LI7_ORYSJ)

HSP 1 Score: 149 bits (375), Expect = 5.860e-38
Identity = 92/248 (37.10%), Postives = 136/248 (54.84%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHG--GARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL    R  + + L+  +  G+L +    + AE F   R +V  +WRR +Q +  G+  +N+ + +  +SGRK+ +ID  +  +  VPL+ R   R+ A   G+ + TL   LK   +R  S  LKP+L EE K+ R+ W +  + D H       F  M N+V +DEK     K  + +YL   ED P   VQ+K+ I KVMFLA V RPR +      FDGKIG++PFT++ PAQR S+NR  GT+
Sbjct:  140 NLTNIQRQEIYDALVKKTINGRLRKKATTEVAEMFNIKRGRVQDIWRRAKQCRAQGI-PVNVSSRKKTNSGRKKNEIDLSD--VANVPLQLRGTLRSFASAAGIPKSTLHRMLKEGLIRRHSNTLKPLLKEENKRSRLQWCISML-DWHTLPNEPKFVDMRNIVHIDEKWFNTTKKTRTFYLVHWEDDPYRPVQNKNSIDKVMFLAAVARPRYNEEGICTFDGKIGLWPFTKKEPAQRTSQNRPRGTL 383          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: B9FLL3_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FLL3_ORYSJ)

HSP 1 Score: 148 bits (373), Expect = 8.880e-38
Identity = 95/247 (38.46%), Postives = 137/247 (55.47%), Query Frame = 1
Query:    4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV--RDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            L    R  + E LL+ S  G L +G  +  AE F  S   V  +W+R +     GV  +N+ + +  + GRK+++ID     +  +PL+ R+  R++A+ LG+S+ TL    K   LR  S  LKP L E  KK+R+ W +  +  R      + F  M+N++ +DEK     K  + YYL   E  P   VQ+K+ I+KVMFL+ V RPR D   N  FDGKIGI+PF R+ PAQR+SRNR  GT+
Sbjct:  123 LTNPQRRSIYELLLTKSLDGYLEKGSTRVVAEVFNVSIRTVQRIWKRAQLCIAQGVQ-VNVDSRKRYNCGRKKVEIDL--SVVAAIPLRQRSTIRSLAEALGVSKSTLHRLFKEGHLRRHSNSLKPYLKEANKKERLRWCVGMLDHRTLPNNPK-FIEMENIIHIDEKWFNATKKDKTYYLHPLEPEPYRTVQNKNAIEKVMFLSAVARPRFDDEGNCTFDGKIGIWPFVRKEPAQRSSRNRERGTL 365          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: Q7G793_ORYSJ (Transposon protein, putative, Mariner sub-class n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7G793_ORYSJ)

HSP 1 Score: 147 bits (372), Expect = 1.560e-37
Identity = 94/246 (38.21%), Postives = 135/246 (54.88%), Query Frame = 1
Query:    4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            L    R R+ E LL+ S  GKL +   +  A+ F  S   V  +W+R +     GV  +N+ + +  + GRK++ ID     +  +PL+ R+  R++A+ LG+S+ TL    K   LR  S  LKP L E  KK+R+ W +  +          F  M+N+V +DEK     K  + +YL   E+ P   VQ+K+ I+KVMFL+ V RPR D   N  FDGKIGI+PF R+ PAQR SRNR  GT+
Sbjct:  144 LTNTQRQRIYELLLAKSKDGKLEKDTTRAVAQVFNVSIRTVQRIWKRAKLCIAHGVQ-VNVDSRKCYNCGRKKVVIDL--SVVSAIPLRQRSTIRSLAEALGVSKSTLHRLFKEGHLRRHSNSLKPYLKEANKKERLQWCVGMLDHRTLPNDPKFIEMENIVHIDEKWFNATKKDRTFYLHPLEEEPYRPVQNKNAIEKVMFLSTVARPRYDAEGNCTFDGKIGIWPFVRKEPAQRRSRNRERGTL 386          
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A397ENB5_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ENB5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.610e-37
Identity = 89/251 (35.46%), Postives = 136/251 (54.18%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG----VMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLK-HLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
            NL +  R  +I  LL+ S GGK   G ++  A++F C R  V  VW  ++    +G    +        +G    + +   +     ++ VP   R   R +A   G+ + T+  ++K +  LR  S +L+P+L+E+ K++R+ +AL +V+  H     FD M +VV VDEK  F  KN  ++Y+ + E +P  + + K  I KVMFL  V RPR D    R FDGKIG++PF  +APAQRNS+NR  GTM
Sbjct:   20 NLTDAERQAMINMLLASSNGGKRKYGSVKGVADQFNCHRTTVSAVWNSWKAACAEGGSKLIASPPTSRMKGNCGAKTKWSAEVIEAAIKSVPFHKRQTTRALAFHSGVPRSTILRHMKRNRRLRCKSSYLRPLLTEDNKEERMKFALSFVKKNH----VFDDMHDVVHVDEKWFFLTKNKGKFYVYDDETLPHRQSKSKRFITKVMFLCAVARPRYDISIRRMFDGKIGMWPFVVKAPAQRNSKNRPRGTM 266          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3HQ96_9ROSI4.540e-4539.11Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
UPI000B8F27567.460e-4239.68uncharacterized protein LOC110913170 n=1 Tax=Helia... [more]
A0A397CQQ2_9STRA5.070e-4035.06Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
UPI001036D5065.530e-4038.46uncharacterized protein LOC114270614 n=1 Tax=Camel... [more]
A0A834LPB9_RHOSS7.330e-4037.25Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
UPI0019D5B3311.970e-3837.50uncharacterized protein LOC120641424 n=1 Tax=Panic... [more]
Q75LI7_ORYSJ5.860e-3837.10Transposon protein, putative, Mariner sub-class n=... [more]
B9FLL3_ORYSJ8.880e-3838.46Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
Q7G793_ORYSJ1.560e-3738.21Transposon protein, putative, Mariner sub-class n=... [more]
A0A397ENB5_9STRA1.610e-3735.46EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7463contigF-serratus_M_contig7463:5873..6610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog161934.XP_010684026.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size738
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7463.18697.1prot_F-serratus_M_contig7463.18697.1Fucus serratus malepolypeptideF-serratus_M_contig7463 6290..6595 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932249.2570014-UTR-F-serratus_M_contig7463:5872..62891622932249.2570014-UTR-F-serratus_M_contig7463:5872..6289Fucus serratus maleUTRF-serratus_M_contig7463 5873..6289 -
1690964217.7547867-UTR-F-serratus_M_contig7463:5872..62891690964217.7547867-UTR-F-serratus_M_contig7463:5872..6289Fucus serratus maleUTRF-serratus_M_contig7463 5873..6289 -
1622932249.2905369-UTR-F-serratus_M_contig7463:6595..66101622932249.2905369-UTR-F-serratus_M_contig7463:6595..6610Fucus serratus maleUTRF-serratus_M_contig7463 6596..6610 -
1690964217.7802243-UTR-F-serratus_M_contig7463:6595..66101690964217.7802243-UTR-F-serratus_M_contig7463:6595..6610Fucus serratus maleUTRF-serratus_M_contig7463 6596..6610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932249.2753918-CDS-F-serratus_M_contig7463:6289..65951622932249.2753918-CDS-F-serratus_M_contig7463:6289..6595Fucus serratus maleCDSF-serratus_M_contig7463 6290..6595 -
1690964217.7693107-CDS-F-serratus_M_contig7463:6289..65951690964217.7693107-CDS-F-serratus_M_contig7463:6289..6595Fucus serratus maleCDSF-serratus_M_contig7463 6290..6595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7463.18697.1

>prot_F-serratus_M_contig7463.18697.1 ID=prot_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTD
GVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLS
Q*
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mRNA from alignment at F-serratus_M_contig7463:5873..6610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7463.18697.1 ID=mRNA_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=mRNA|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig7463:5873..6610- (Fucus serratus male)
AATCTCGATGAAAAAATGAGACATCGTTTGATCGAGCACCTCCTTTCCGG CAGTACTGGAGGGAAACTTGGGCGGGGCGACATCCAGGACGCCGCGGAGA AGTTCAAGTGTTCCCGCTACCAGGTCATGGGAGTGTGGCGTCGCTTCGAG CAGCAGAAGACCGACGGTGTGATGGACATCAATCTGCGCAACAACCGTGG TGGACACTCAGGTAGGAAACGCATCGACATCGACAAATACAACGAAAAAC TACAAGAGGTACCGCTCAAAAATCGCACCATCCAGAGGAATGTTGCGAAA CAACTGGGCCTCTCCCAATAAACCCTTCGCAACAACCTCAAGCACCTGGG GTTGCGTTCGGCGTCCCGATTCCTCAAGCCGGTTCTCTCGGAAGAGGGCA AGAAGAAGAGGGTGGATTGGGCCCTGCGTTGGGTGCGTGACGGCCATGGT GGTGCTCGCGCCTTCGACGCGATGGACAACGTGGTCATGGTGGATGAGAA ATGTTTGTTTTTTTTAAAGAATGGTCAGCGGTACTACCTCTGTGAAGGCG AAGATGTGCCGGTCGAGAAGGTGCAACACAAGTCGCACATCAAAAAGGTG ATGTTCCTGGCGGTCGTCGGGCGACCGCGCAGGGACACGGTGAACAACAG GAACTTCGACGGGAAGATCGGCATCTTCCCGTTCACCAGGAGGGCGCCGG CCCAACGCAACAGCAGGAACAGGGCTGCGGGGACGATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7463:5873..6610-

>mRNA_F-serratus_M_contig7463.18697.1 ID=mRNA_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig7463:5873..6610- (Fucus serratus male)
ATGAGACATCGTTTGATCGAGCACCTCCTTTCCGGCAGTACTGGAGGGAA
ACTTGGGCGGGGCGACATCCAGGACGCCGCGGAGAAGTTCAAGTGTTCCC
GCTACCAGGTCATGGGAGTGTGGCGTCGCTTCGAGCAGCAGAAGACCGAC
GGTGTGATGGACATCAATCTGCGCAACAACCGTGGTGGACACTCAGGTAG
GAAACGCATCGACATCGACAAATACAACGAAAAACTACAAGAGGTACCGC
TCAAAAATCGCACCATCCAGAGGAATGTTGCGAAACAACTGGGCCTCTCC
CAATAAATGAGACATCGTTTGATCGAGCACCTCCTTTCCGGCAGTACTGG
AGGGAAACTTGGGCGGGGCGACATCCAGGACGCCGCGGAGAAGTTCAAGT
GTTCCCGCTACCAGGTCATGGGAGTGTGGCGTCGCTTCGAGCAGCAGAAG
ACCGACGGTGTGATGGACATCAATCTGCGCAACAACCGTGGTGGACACTC
AGGTAGGAAACGCATCGACATCGACAAATACAACGAAAAACTACAAGAGG
TACCGCTCAAAAATCGCACCATCCAGAGGAATGTTGCGAAACAACTGGGC
CTCTCCCAATAA
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