mRNA_F-serratus_M_contig742.18683.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig742.18683.1
Unique NamemRNA_F-serratus_M_contig742.18683.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.390e-52
Identity = 122/278 (43.88%), Postives = 152/278 (54.68%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ--------------VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            + PA V P+RV LK GA    V A+P VY P K+AW       L G G V+ N+QAV AS AMA PK+   GY LV+DF   N Q E VPG M N E    + + A  + ++D LQ                 +T  GL+TP R PQG++N TSY Q  +  +L  L      + VDDV  +G    +L+  L  +L R    GL++AA K   F      CGK+Y    V HDPER+ GL  MRRPET GELM+FLQ  NW   SLP+MAEVV PLR
Sbjct:  749 DPPANVEPLRVTLKPGA--RPVKARPRVYNPIKTAW-------LAGLGLVFLNMQAVWASAAMATPKKG--GYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGL---NCFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLR 1012          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.130e-49
Identity = 113/280 (40.36%), Postives = 151/280 (53.93%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG--YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ------------VIFST--GDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            + PA V PM V LK GA    V A+   Y P+K+ W       L   G VY NLQA+ AS  M  PKR      Y  V DF  +N Q E  PGPM + E + ++ + A  + ++D LQ             IF+     GL++P R PQGV+N TSY QG M  +L +L      + VDD+  +G +  +L+  L  +L R    GLF+AA K   +    K CGK+Y    + HD +R+ GL  +RRPET GELM+FLQ  NW   SLP+M+E+VAPLR
Sbjct:  640 DPPANVPPMTVKLKTGA--KPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDL---NCIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLR 914          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 9.980e-43
Identity = 109/282 (38.65%), Postives = 144/282 (51.06%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG----YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ------------VIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            E   +V P+++ LK G  +  V  K  VY P K+ W       L   G V   +QAV AS AM  PK    G    Y L  D+L  N QCE VP  + + E +     GA  F  +D LQ             IFS  T +GLF P R PQ V+N T Y Q +M E+L  L     ++ VDD   +G    +L+  L  +L R  + G+F AA K   F  + + CGK+Y G  V  DPER++GL  MRRPET G+LM+FLQ   W   SL ++AEV+ P+R
Sbjct:  389 EVQRKVEPLKMTLKPG--VQHVQEKARVYSPAKATWLSGCMAALVAMGMVVKTIQAVWASPAMTVPKPGRVGREGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGL---NCAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVR 665          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6G0QQ04_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ04_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.070e-25
Identity = 80/274 (29.20%), Postives = 125/274 (45.62%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPI-----NGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ--------------VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQ 765
            + P RV P++V LK G  ++   ++P  Y P+  A+ + H + L     V+ N ++  AS      K++     L    + +     N + E +P PM   E    +  GA  F  +D  +                F T  G++TP R P G  +  +Y QG++ E+LG+L+G      + D+  +      L+  L  +L RC E GL L A+K   FA E   CGKL     V H PERV+GL+ +    T GEL +F+    W    +P+
Sbjct:  159 DPPVRVAPLQVSLKPG--VTPTKSQPRRYSPDDRAFLERHVDALWQHSLVFRNPRSRWASAPRIVRKKEQDHDPLAGPRMTVYTRAENERTEAMPWPMPVLEVVIGELEGAHVFFVLDWFRGDCQLPLHPDSQEYFTFVTHRGMYTPTRVPTGATDAVAYCQGVVEEILGDLLGNGILCWLGDILGYAADATALMELLDKVLARCEEYGLKLLAKKCQFFATEVMWCGKLISAQGVMHCPERVQGLIGIPLSRTAGELQQFICAITWMRRGIPE 430          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4XTQ4_9STRA (RNA-directed DNA polymerase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTQ4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.620e-25
Identity = 82/278 (29.50%), Postives = 121/278 (43.53%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            + P RV PMR+ L+  A   +   +   Y   + A+ + + + L   G V  N  +  A  A+   K    G+ +  D+ P+N     + G   N     +   GA  F   D             C +++ F T DG+FTP+R PQG  +   + Q  M E    ++  +  + +DDV +F  S AE +  LR       +R L L A+K  LFA +   CGK+  G  V HDP R+  L  M  P T   L  FL   NW   S+   A  V PL+
Sbjct:  513 DEPTRVEPMRITLRPDAQPYRSGVRK--YPDMQRAFLRTYVQELLDNGLVRRNNSSRWACAALPVRKAGGDGFRITVDYRPVNKLTVPLAGTTPNLTAVTQSVRGAYGFGQFDLFKRFWQLPLMEECQELLSFVTEDGVFTPLRVPQGASDSAMHFQLQMHECFREMLYDSVLVWIDDVLLFSTSPAEFLAKLRVFFQILRQRNLKLNAKKCTLFAPKVIWCGKVIDGEEVQHDPARLATLRKMPLPPTAAALQTFLCAVNWLMDSMVDYARTVGPLQ 788          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4X8V4_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8V4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.450e-23
Identity = 88/280 (31.43%), Postives = 127/280 (45.36%), Query Frame = 1
Query:    7 PARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG-YNLVADFLPINGQCELVPGPMRNSETEGE---------KYA------GAVAFCTMDCLQVIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            PA+V  ++V L+  A   + + +   Y P ++ + + +   L   G +  N  +  AS  +   K      + L  D+ P+N Q   V   M    T+GE          YA      G   F   +  Q IFS  T DG+F+P+R PQGV +   + Q  M  VL  ++ R     +DD+ +F + +   +  L+         GL L   K  LF  E K CG+L  G  + HDP RV  L  +  P TV EL  F+ VANW   SLP  A VVAPL+
Sbjct:  397 PAKVESLQVTLRDDAVPFRCHGRN--YPPLQAEFIRGYIRQLLERGLIRKNNASKWASAVVPVRKPGTDNQFRLTIDYRPVNAQTVPVADRM---PTQGEVIGAVRGAKHYARFHLPEGFWQFPLHEDSQEIFSFLTPDGVFSPLRVPQGVTDSALHFQAQMQTVLAPMIPRNVICWIDDILIFAKDMDSFLDALQEFFDIVGGHGLRLHPSKSSLFESEVKWCGRLISGDGIRHDPARVEALTTLPLPSTVAELQYFVCVANWLHESLPDFARVVAPLQ 671          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: H3GHY8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHY8_PHYRM)

HSP 1 Score: 109 bits (273), Expect = 2.000e-23
Identity = 81/280 (28.93%), Postives = 122/280 (43.57%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGAD--LSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCL------------QVIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            + PA+V PMRV L+  ++   S V   P +    + A+ + + +     G +  N  +  A  A+   K    GY +  D+ P+N     + GP  N     +   GA  F   D              Q +FS  T DG+FTP+R PQG  +   + Q  M +   +++  +  + +DDV +F +S +E I  LR       +R L L A+   LFA     CGK+  G  + HD  R+  L  M  P T   L  FL   NW   S+   A  V PL+
Sbjct:  448 DEPAKVEPMRVALRPDSEPYRSGVRKHPDM----QRAFLRTYVQEPLDNGLIIRNNNSRWACAALPVRKSSGDGYRITVDYRPVNKMTMPLAGPTPNLAAVTQSVRGAYGFGQFDLFKGFWQMPLAAESQELFSFVTEDGVFTPLRVPQGASDSAMFFQLQMHDCFRSMLYDSVLVWIDDVLLFAKSPSEFIEKLRLFFQILRQRNLKLNAKTCTLFAHRVVWCGKVVDGEGLEHDSARLSALREMPLPPTAAALQSFLCAVNWLRDSMVDYARTVGPLQ 723          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4XNQ9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNQ9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.150e-22
Identity = 77/277 (27.80%), Postives = 124/277 (44.77%), Query Frame = 1
Query:    7 PARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCK-GYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            PARV P++       + S ++A  G     K  +  EH   L   G +  N  +  AS A+   K   K G+ +   ++ +N +   + G M +        AG       D             C ++  F T DG++TP+R PQG  +   + Q  M  V   L+ +   + +DDV V+G++  E + NL+       E  L L A+K VL + E   CG++  G  +  DP+R+ GLV +  P+T  +L +FL V NW   S+     +  PL+
Sbjct:  411 PARVEPLK-------EWSHIDANQGNIHQRKIKFLDEHIAQLMQFGFIKKNNLSKWASNAVPVRKSDDKTGFRVTNAYIDVNKRTVPIAGTMPHLSVVLSFVAGVKFIAKFDMFKGFWQIMLAEECQEIFSFMTHDGVYTPLRVPQGATDSALHFQNQMQTVYKPLLYKGALVWIDDVIVYGKTEEEFLANLKLFYELTAEYRLKLNAKKSVLMSFEVSWCGRIIDGEGIRQDPQRLSGLVSLPLPKTAADLQRFLCVCNWIRDSIVDFVRIFEPLQ 680          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6A3GUM3_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GUM3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.620e-18
Identity = 70/245 (28.57%), Postives = 110/245 (44.90%), Query Frame = 1
Query:  112 KEHFELLCGTGTVYPNLQAVCASVAMAFPK----RQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            +EH   L   G V  N  +  AS A+   K     + +G N   +++ IN +   + G M +        +G       D             C ++  F T DG++TP+R PQG  +   + Q  M  V   L+ +   I +DD+ V+GR+  + + NLR       +  L L A+K VL A E   CG++  G  +  DPER+  LV +  P+T  +L +FL   NW   S+   A V  P++
Sbjct:   86 EEHVAQLLKFGFVKKNNLSKWASNAVPVLKPGSNNEFRGTN---NYIKINNKTVPIAGTMPHFSIILRHVSGVKFIAKFDMFKGFWQIMLAEECQEMFSFMTHDGVYTPLRVPQGATDSALHFQNQMQTVYKPLLYKGALIWIDDIIVYGRTEEDFLANLRLFYELTAKHRLKLNAKKSVLMAFEVSWCGRIIDGQCIRQDPERLSALVSLPLPQTAADLQRFLCACNWIRDSIVDFARVFEPMQ 327          
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6G0MGM2_9STRA (RNA-directed DNA polymerase n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MGM2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.130e-17
Identity = 76/278 (27.34%), Postives = 119/278 (42.81%), Query Frame = 1
Query:    1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQ-CKGYNLVADFLPINGQCELVPGPMR----NSETEGEKYAGAVAFC--------TMDCLQ-VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
            + PARV P+ V LK+GA  S+   KP  Y P    + +E  + L   G VY N  +  AS  +   K Q          +  IN   E++   M          G+++ G   F            C + + + T + +FTP R  QG  +   + Q  M +    L+ +   + +DD+ ++   +   +  L  +     + GL L+ +K  L+  E K CGK+     V HD  R+  L  M  P T GEL +F+   NW   SL   A  V+PL+
Sbjct:  233 DPPARVPPLEVRLKEGAQPSK--CKPRKYPPHIRQFLREFNQQLVDLGLVYENPTSRWASPVLPVKKSQELMDLRQTTYYREINSVTEVMAAVMPILLVMENPRGKQHFGLFDFLKGFWQLPLAELCQEWMSYMTDEKIFTPRRVHQGCSDAAIHFQKTMEKCFATLLYKHRLVWIDDLLLYADDIDTYLDKLAELFSLLNDFGLKLSVKKSSLYQTEVKWCGKIIDANGVRHDSARIESLRAMPYPSTAGELQQFICAINWMRESLVDYARRVSPLQ 508          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE2.390e-5243.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.130e-4940.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE9.980e-4338.65CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0QQ04_9STRA1.070e-2529.20Integrase catalytic domain-containing protein n=5 ... [more]
A0A2P4XTQ4_9STRA9.620e-2529.50RNA-directed DNA polymerase n=2 Tax=Phytophthora p... [more]
A0A2P4X8V4_9STRA1.450e-2331.43RNA-directed DNA polymerase (Fragment) n=1 Tax=Phy... [more]
H3GHY8_PHYRM2.000e-2328.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4XNQ9_9STRA2.150e-2227.80Reverse transcriptase domain-containing protein n=... [more]
A0A6A3GUM3_9STRA4.620e-1828.57Reverse transcriptase domain-containing protein n=... [more]
A0A6G0MGM2_9STRA1.130e-1727.34RNA-directed DNA polymerase n=2 Tax=Phytophthora f... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig742contigF-serratus_M_contig742:123318..124151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue1e-18
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size792
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig742.18683.1prot_F-serratus_M_contig742.18683.1Fucus serratus malepolypeptideF-serratus_M_contig742 123342..124046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.9598022-UTR-F-serratus_M_contig742:123317..1233411622932247.9598022-UTR-F-serratus_M_contig742:123317..123341Fucus serratus maleUTRF-serratus_M_contig742 123318..123341 +
1690964217.1734023-UTR-F-serratus_M_contig742:123317..1233411690964217.1734023-UTR-F-serratus_M_contig742:123317..123341Fucus serratus maleUTRF-serratus_M_contig742 123318..123341 +
1622932248.0369408-UTR-F-serratus_M_contig742:124046..1241511622932248.0369408-UTR-F-serratus_M_contig742:124046..124151Fucus serratus maleUTRF-serratus_M_contig742 124047..124151 +
1690964217.2064328-UTR-F-serratus_M_contig742:124046..1241511690964217.2064328-UTR-F-serratus_M_contig742:124046..124151Fucus serratus maleUTRF-serratus_M_contig742 124047..124151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.9883964-CDS-F-serratus_M_contig742:123341..1236661622932247.9883964-CDS-F-serratus_M_contig742:123341..123666Fucus serratus maleCDSF-serratus_M_contig742 123342..123666 +
1690964217.1858556-CDS-F-serratus_M_contig742:123341..1236661690964217.1858556-CDS-F-serratus_M_contig742:123341..123666Fucus serratus maleCDSF-serratus_M_contig742 123342..123666 +
1622932248.0127213-CDS-F-serratus_M_contig742:123708..1240461622932248.0127213-CDS-F-serratus_M_contig742:123708..124046Fucus serratus maleCDSF-serratus_M_contig742 123709..124046 +
1690964217.1956582-CDS-F-serratus_M_contig742:123708..1240461690964217.1956582-CDS-F-serratus_M_contig742:123708..124046Fucus serratus maleCDSF-serratus_M_contig742 123709..124046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig742.18683.1

>prot_F-serratus_M_contig742.18683.1 ID=prot_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVC
ASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVA
FCTMDCLQVIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRAD
SICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRC
GKLYMGTAVGHDPERVRGLV*
back to top

mRNA from alignment at F-serratus_M_contig742:123318..124151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig742.18683.1 ID=mRNA_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=mRNA|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig742:123318..124151+ (Fucus serratus male)
GAGACGCCGGCACGCGTGACCCCCATGCGGGTAATGCTGAAACAAGGCGC GGATCTCTCGCAGGTGAACGCCAAGCCGGGTGTGTATGGCCCTGAGAAGA GCGCCTGGCGTAAGGAGCATTTTGAGTTGCTCTGTGGGACAGGGACGGTG TACCCGAATCTGCAGGCGGTTTGTGCAAGTGTGGCGATGGCGTTTCCCAA GAGACAATGCAAGGGATACAATTTGGTGGCTGATTTTCTCCCCATCAACG GCCAGTGCGAGTTGGTGCCGGGGCCGATGCGGAATTCTGAGACTGAGGGA GAAAAATATGCTGGCGCCGTGGCTTTTTGTACTATGGACTGCCTTCAAGG TTACTAGCAGTGCTCGCTGGCGGAGAAGGCGAGTGAGTAAGTCATATTTT CGACTGGGGATGGCCTGTTCACGCCGATGCGTGGGCCGCAGGGAGTCATG AATATTACGTCATACTTACAGGGGATGATGATGGAGGTCTTGGGAAATCT AGTGGGGCGTGCCGATTCGATTTGTGTGGATGACGTGAAGGTTTTCGGGC GATCCGTGGCGGAGCTGATAGTGAATCTGCGTGCGATGCTGCTGCGGTGT ATGGAGCGTGGTTTGTTTCTTGCGGCGCAAAAGCTTGTCCTGTTTGCCAA AGAGGCAAAACGGTGCGGCAAGCTTTATATGGGGACAGCCGTCGGACACG ACCCAGAGCGCGTGCGTGGACTGGTGTAGATGCGCCGACCAGAGACGGTG GGCGAGCTGATGAAGTTTCTGCAGGTGGCGAATTGGACGAGTTTGTCACT GCCTCAAATGGCGGAAGTTGTGGCACCGCTGCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig742:123318..124151+

>mRNA_F-serratus_M_contig742.18683.1 ID=mRNA_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig742:123318..124151+ (Fucus serratus male)
ATGCGGGTAATGCTGAAACAAGGCGCGGATCTCTCGCAGGTGAACGCCAA
GCCGGGTGTGTATGGCCCTGAGAAGAGCGCCTGGCGTAAGGAGCATTTTG
AGTTGCTCTGTGGGACAGGGACGGTGTACCCGAATCTGCAGGCGGTTTGT
GCAAGTGTGGCGATGGCGTTTCCCAAGAGACAATGCAAGGGATACAATTT
GGTGGCTGATTTTCTCCCCATCAACGGCCAGTGCGAGTTGGTGCCGGGGC
CGATGCGGAATTCTGAGACTGAGGGAGAAAAATATGCTGGCGCCGTGGCT
TTTTGTACTATGGACTGCCTTCAAGATGCGGGTAATGCTGAAACAAGGCG
CGGATCTCTCGCAGGTGAACGCCAAGCCGGGTGTGTATGGCCCTGAGAAG
AGCGCCTGGCGTAAGGAGCATTTTGAGTTGCTCTGTGGGACAGGGACGGT
GTACCCGAATCTGCAGGCGGTTTGTGCAAGTGTGGCGATGGCGTTTCCCA
AGAGACAATGCAAGGGATACAATTTGGTGGCTGATTTTCTCCCCATCAAC
GGCCAGTGCGAGTTGGTGCCGGGGCCGATGCGGAATTCTGAGACTGAGGG
AGAAAAATATGCTGGCGCCGTGGCTTTTTGTACTATGGACTGCCTTCAAG
TCATATTTTCGACTGGGGATGGCCTGTTCACGCCGATGCGTGGGCCGCAG
GGAGTCATGAATATTACGTCATACTTACAGGGGATGATGATGGAGGTCTT
GGGAAATCTAGTGGGGCGTGCCGATTCGATTTGTGTGGATGACGTGAAGG
TTTTCGGGCGATCCGTGGCGGAGCTGATAGTGAATCTGCGTGCGATGCTG
CTGCGGTGTATGGAGCGTGGTTTGTTTCTTGCGGCGCAAAAGCTTGTCCT
GTTTGCCAAAGAGGCAAAACGGTGCGGCAAGCTTTATATGGGGACAGCCG
TCGGACACGACCCAGAGCGCGTGCGTGGACTGGTGTAGTCATATTTTCGA
CTGGGGATGGCCTGTTCACGCCGATGCGTGGGCCGCAGGGAGTCATGAAT
ATTACGTCATACTTACAGGGGATGATGATGGAGGTCTTGGGAAATCTAGT
GGGGCGTGCCGATTCGATTTGTGTGGATGACGTGAAGGTTTTCGGGCGAT
CCGTGGCGGAGCTGATAGTGAATCTGCGTGCGATGCTGCTGCGGTGTATG
GAGCGTGGTTTGTTTCTTGCGGCGCAAAAGCTTGTCCTGTTTGCCAAAGA
GGCAAAACGGTGCGGCAAGCTTTATATGGGGACAGCCGTCGGACACGACC
CAGAGCGCGTGCGTGGACTGGTGTAG
back to top