mRNA_F-serratus_M_contig7418.18682.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7418.18682.1
Unique NamemRNA_F-serratus_M_contig7418.18682.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7418.18682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7418contigF-serratus_M_contig7418:680..2713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7418.18682.1prot_F-serratus_M_contig7418.18682.1Fucus serratus malepolypeptideF-serratus_M_contig7418 680..2624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.842154-CDS-F-serratus_M_contig7418:679..7541622932247.842154-CDS-F-serratus_M_contig7418:679..754Fucus serratus maleCDSF-serratus_M_contig7418 680..754 -
1690964217.1218503-CDS-F-serratus_M_contig7418:679..7541690964217.1218503-CDS-F-serratus_M_contig7418:679..754Fucus serratus maleCDSF-serratus_M_contig7418 680..754 -
1622932247.8660624-CDS-F-serratus_M_contig7418:1962..20791622932247.8660624-CDS-F-serratus_M_contig7418:1962..2079Fucus serratus maleCDSF-serratus_M_contig7418 1963..2079 -
1690964217.1336937-CDS-F-serratus_M_contig7418:1962..20791690964217.1336937-CDS-F-serratus_M_contig7418:1962..2079Fucus serratus maleCDSF-serratus_M_contig7418 1963..2079 -
1622932247.8847008-CDS-F-serratus_M_contig7418:2555..26241622932247.8847008-CDS-F-serratus_M_contig7418:2555..2624Fucus serratus maleCDSF-serratus_M_contig7418 2556..2624 -
1690964217.1441813-CDS-F-serratus_M_contig7418:2555..26241690964217.1441813-CDS-F-serratus_M_contig7418:2555..2624Fucus serratus maleCDSF-serratus_M_contig7418 2556..2624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.900373-UTR-F-serratus_M_contig7418:2624..27131622932247.900373-UTR-F-serratus_M_contig7418:2624..2713Fucus serratus maleUTRF-serratus_M_contig7418 2625..2713 -
1690964217.1559339-UTR-F-serratus_M_contig7418:2624..27131690964217.1559339-UTR-F-serratus_M_contig7418:2624..2713Fucus serratus maleUTRF-serratus_M_contig7418 2625..2713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7418.18682.1

>prot_F-serratus_M_contig7418.18682.1 ID=prot_F-serratus_M_contig7418.18682.1|Name=mRNA_F-serratus_M_contig7418.18682.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MYGDEQADAGRECQTRLARPNSQEEWEKIFGPDASLIQDASSIEIPLPCD
GVSSAGEAENSKDAEHNKSREAVRKPLSEVHLGQHAI
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mRNA from alignment at F-serratus_M_contig7418:680..2713-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7418.18682.1 ID=mRNA_F-serratus_M_contig7418.18682.1|Name=mRNA_F-serratus_M_contig7418.18682.1|organism=Fucus serratus male|type=mRNA|length=2034bp|location=Sequence derived from alignment at F-serratus_M_contig7418:680..2713- (Fucus serratus male)
TATGGCGATTTAAATACATAAATGGGCGCCGCCGCGGAATCGGGAGGAAC
CCCACCCCGTAAGCCACCAGATTCATCCTGAGTACCAGTATGTATGGAGA
TGAGCAGGCTGACGCGGGACGGGAATGCCAAACCCGTCTCGCGAGACCAA
ACTCTCAGGCGAGAACGGGGACAATGAAATATCAATTTTCCCTGTTGAGC
TGACCACGAGCAGAATTGGCAACCTTACCCGGTTGATCCATACTCTTGCT
ATATGTAATGACCATACCTATGCTGTATGTGAAGCTTGGGGACTTCATTT
TGCGGCAGTGTTATCCGGCGAATGCGTTTATTGTGGGACAGTGTTACACA
TCAAGCATCCTCTTCGTATTGTTAACTTGATTCTAACGTGTAAGCACACA
AGGGCAACTTCTTTTAGAGAGATGGCAAGAGACAGATCCTCCTCGGGGCT
GCAGCACGGACTGTTATTTGTGAGATTTTTGACGCAAAGCACCGCAGGCA
TGTGGAACTCCTCTATACGACAGAAAGTGTGAGGAAGGAAAATCATGATT
CTGCTTATTCAGTACCTGGTAACATTTTTATACTGATTTGGAGCTACATT
AAACGTTTATGATGTGTACATGTCACTCGTGTAGGAGGAGTGGGAAAAAA
TCTTCGGACCCGACGCCTCTCTGATACAAGACGCCTCTTCCATAGAAATC
CCTCTCCCGTGTGACGGCGTTAGCTCTGCGGGCGAAGCAGAAAACAGCAA
GGTGAGTGCTTTGGGTTGTTTGAGGGGTGGTGAAGGCAATTTTTAGGTTT
TCACGTGTAATACGCTTTTTTTAAGAGGGGCATTAACTGTGACGGTTGTT
ATTAATAGTGTGTTTGTTGCCGGCCGTTTGTCGCTCATTTTGTGGAGTAT
CTCACCTTGGAGCCCAATATAGTTGTACAAGCAACGAATGCAAATGCCCT
CGTCGCCTCGCCCGAGTGGTCTAGAAGGTAACCTGCACACCTGCTATTAA
TAGTGCGGAAGTCGTTAGTTCGATTCTTACCAAAGTAGGATTATTTGTGT
TCGTTCTTTCGTAACGGAAAGCGTGGGAACGCGAGTAAGTAAAATTCAAC
TATTAATATTGGTTGACGAGTTGTAAGAGTGCGGAACTTGCATCGCGATA
AAAATCCATGAGGTGGGAACCGGGGAGAGACGGGGAGATCCTTAGTGACC
ACATACATTAACAGGATGGCAACGTTGAGGCCTATCGGCTATAAGTGCGT
GCGCTCGAATCGCTTTGGAAGCACACCCCCCCCCCTCCCAGTACTACAGC
GGGAACAAGAGCAGAGGGATTTATCCTGTATTTTTTACCGTACTCTCTTG
GCACTCGGTCTGTTATTTTCTATACAAAAACGTATATAAAACTTGCACGT
GTACAAGATCCGAAAGGTTTCTCTCTCTAATACTGGTAATAATAAAAAAA
GATTCGCCGATAACGCTATTAATAGAAGAGTGTCTTTCTTTTCTTGTCGA
TGAAAAGTGGAGTTTAAAATTTTGTCTCCGTTTCTTGTTTTTTGTTTTAA
CTTCACGAACGGATCGTTTTTATCGTTTTTATCTATCGTTACATGTTTCT
CCACCGAACCGAACGGTATTTTTCGCTCAACGTATAGTATGACGTTTCTC
CCTTTAACATACTGGTACGCACATGGAAGTATAGTATAGTATACCTGGTA
GTATTTTGTTTGGTTTTTCCTTCCCTTTTTTTTTTTTTTTTTTTATGTTT
CGACTCTACGTTACTGGTAGTTAGGCATCTTTCCCCTGAAACAGTAAGTA
CCTGGCATGCGTTAAAAAAACATCTCCCGACCATTGATACCTGGTACCTG
GTACCTGGTACCTGGTAGGAGTTATGGCGGCAGAGTTACTGTGTTTTACA
ATCGATCATGAGCGAATTTTCGTGCCTCCCCCGTCCCTCCGTGGCGTATA
ACACGACAGGACGCGGAACACAACAAGAGCCGCGAGGCGGTAAGGAAGCC
GCTGAGCGAGGTTCACCTGGGGCAGCACGCCATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7418:680..2713-

>mRNA_F-serratus_M_contig7418.18682.1 ID=mRNA_F-serratus_M_contig7418.18682.1|Name=mRNA_F-serratus_M_contig7418.18682.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig7418:680..2713- (Fucus serratus male)
ATGTATGGAGATGAGCAGGCTGACGCGGGACGGGAATGCCAAACCCGTCT
CGCGAGACCAAACTCTCAGATGTATGGAGATGAGCAGGCTGACGCGGGAC
GGGAATGCCAAACCCGTCTCGCGAGACCAAACTCTCAGGAGGAGTGGGAA
AAAATCTTCGGACCCGACGCCTCTCTGATACAAGACGCCTCTTCCATAGA
AATCCCTCTCCCGTGTGACGGCGTTAGCTCTGCGGGCGAAGCAGAAAACA
GCAAGGAGGAGTGGGAAAAAATCTTCGGACCCGACGCCTCTCTGATACAA
GACGCCTCTTCCATAGAAATCCCTCTCCCGTGTGACGGCGTTAGCTCTGC
GGGCGAAGCAGAAAACAGCAAGGACGCGGAACACAACAAGAGCCGCGAGG
CGGTAAGGAAGCCGCTGAGCGAGGTTCACCTGGGGCAGCACGCCATCGAC
GCGGAACACAACAAGAGCCGCGAGGCGGTAAGGAAGCCGCTGAGCGAGGT
TCACCTGGGGCAGCACGCCATC
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