mRNA_F-serratus_M_contig7411.18679.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7411.18679.1
Unique NamemRNA_F-serratus_M_contig7411.18679.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7411.18679.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.910e-6
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:    3 IADVVQVCK--------FGEELVV*MT*FGKNVRGTLRHMAKRESGPSTFFSHCANDAG 155
            +  VVQV K         G  ++V  +  G++  GTLRHMA RESGP TFFS CAN+AG
Sbjct:  435 VEAVVQVAKEEAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 493
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BLAST of mRNA_F-serratus_M_contig7411.18679.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.600e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:   33 GEELVV*MT*FGKNVRGTLRHMAKRESGPSTFFSHCANDAG 155
            G  ++V  +  G++  GTLRHMA RESGP TFFS CAN+AG
Sbjct:    3 GVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 43
[Close]
BLAST of mRNA_F-serratus_M_contig7411.18679.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.400e-6
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 3 
Query:    3 IADVVQVCK--------FGEELVV*MT*FGKNVRGTLRHMAKRESGPSTFFSHCANDAG 155
            +  VVQV K         G  ++V  +  G+   GTLRHMA RESGP TFFS CAN+AG
Sbjct:  293 VEAVVQVAKEETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAG 351
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7411.18679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE2.910e-649.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGM5_9PHAE3.600e-658.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYT6_9PHAE5.400e-649.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7411contigF-serratus_M_contig7411:4520..5155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size102
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7411.18679.1prot_F-serratus_M_contig7411.18679.1Fucus serratus malepolypeptideF-serratus_M_contig7411 4520..5083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.575584-CDS-F-serratus_M_contig7411:4519..46141622932247.575584-CDS-F-serratus_M_contig7411:4519..4614Fucus serratus maleCDSF-serratus_M_contig7411 4520..4614 -
1690964217.0113082-CDS-F-serratus_M_contig7411:4519..46141690964217.0113082-CDS-F-serratus_M_contig7411:4519..4614Fucus serratus maleCDSF-serratus_M_contig7411 4520..4614 -
1622932247.5960777-CDS-F-serratus_M_contig7411:5076..50831622932247.5960777-CDS-F-serratus_M_contig7411:5076..5083Fucus serratus maleCDSF-serratus_M_contig7411 5077..5083 -
1690964217.0228665-CDS-F-serratus_M_contig7411:5076..50831690964217.0228665-CDS-F-serratus_M_contig7411:5076..5083Fucus serratus maleCDSF-serratus_M_contig7411 5077..5083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.6211011-UTR-F-serratus_M_contig7411:5083..51551622932247.6211011-UTR-F-serratus_M_contig7411:5083..5155Fucus serratus maleUTRF-serratus_M_contig7411 5084..5155 -
1690964217.0373116-UTR-F-serratus_M_contig7411:5083..51551690964217.0373116-UTR-F-serratus_M_contig7411:5083..5155Fucus serratus maleUTRF-serratus_M_contig7411 5084..5155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7411.18679.1

>prot_F-serratus_M_contig7411.18679.1 ID=prot_F-serratus_M_contig7411.18679.1|Name=mRNA_F-serratus_M_contig7411.18679.1|organism=Fucus serratus male|type=polypeptide|length=34bp
MSGELYATWQNERADLARFSPTARTTQGQQRTSR
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mRNA from alignment at F-serratus_M_contig7411:4520..5155-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7411.18679.1 ID=mRNA_F-serratus_M_contig7411.18679.1|Name=mRNA_F-serratus_M_contig7411.18679.1|organism=Fucus serratus male|type=mRNA|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig7411:4520..5155- (Fucus serratus male)
GCATTGCCGATGTGGTGCAGGTCTGCAAGTTCGGGGAGGAGCTCGTCGTG
TAGATGACGTAATTCGGGAAAAATGTCAGGTGAGGAATTCATCCGTCGTT
GCTCACCTATTGCGAATTTTCTTCCATTGTGCTATCGAGGTTAATGGTAA
CCTAACTAGGAAAATATTTGCAGGTGTCTCCGGGTACGGTATTAACTGGA
ACACCCCGATTTAAATGTACTCCACCCTTCGCGTCCGGCCGGCAGGACAT
GACAAGGAAGTCTGACCGAGAAAAAACGAAAATGAAGATCAATCACGGTG
TTTTCGAAAACGCCCTCGGAGAAGAGGGTGTTCTAGGCACCGTGTTTCAA
TCGGGGCTTTGTGATAGGTGTAAAGGAAAGTTTTATGCACGACTGTAATG
ATAATAGTACATTTGTAAAACGATCCGGGTGACAACAGGTCCCAGTGCCT
ATTTATAGCTCGGTCACGAACTACGTCGACGGTTTCAAACTAATGTACAC
AGTCTCGCCGCGCGCTTCTACGATCTGTCCATCTCACTCAGGGGAACTCT
ACGCCACATGGCAAAACGAGAGAGCGGACCTAGCACGTTTTTCTCCCACT
GCGCGAACGACGCAGGGGCAACAACGCACGTCGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7411:4520..5155-

>mRNA_F-serratus_M_contig7411.18679.1 ID=mRNA_F-serratus_M_contig7411.18679.1|Name=mRNA_F-serratus_M_contig7411.18679.1|organism=Fucus serratus male|type=CDS|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig7411:4520..5155- (Fucus serratus male)
ATGTCAGATGTCAGGGGAACTCTACGCCACATGGCAAAACGAGAGAGCGG
ACCTAGCACGTTTTTCTCCCACTGCGCGAACGACGCAGGGGCAACAACGC
ACGTCGCGCGGGAACTCTACGCCACATGGCAAAACGAGAGAGCGGACCTA
GCACGTTTTTCTCCCACTGCGCGAACGACGCAGGGGCAACAACGCACGTC
GCGC
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