mRNA_F-serratus_M_contig741.18678.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 144 bits (364), Expect = 4.990e-37 Identity = 87/197 (44.16%), Postives = 106/197 (53.81%), Query Frame = 2
Query: 2 RWMLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCY--------------------------------SCGETSEESSWLQSSAGG----LLRFLQGWDRVPGTLEPASELVGAFPHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
+WMLEPSL + + AK Y DPLQ ALDRGS L F+ SPLVLDY+ +KF T+P W+SRNPF TI+ Y Y S G T+ S+L S G LLRFLQGWD + V + PH T+LPGLQF+LAGI+G P TFF VPV+RF +EI SY+
Sbjct: 701 QWMLEPSLLVEKINKAKKYRGPVYKDPLQSALDRGSDALEFLFSPLVLDYVHVKFAGTLPHWSSRNPFQPTINEGLYKYDNFEVYDLAKLLRGSKNDQATGRTAPSGASSASTGSTNR-GSFLWRSPGSIMSFLLRFLQGWDHPRSN----DQSVWSIPHLTILPGLQFSLAGILGKPETFFKVPVIRFVYEIFSYL 892
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 136 bits (343), Expect = 3.250e-34 Identity = 87/199 (43.72%), Postives = 106/199 (53.27%), Query Frame = 2
Query: 2 RWMLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCY--------------------------------SCGETSEES--SWLQSSAGG----LLRFLQGWDRVPGTLEPASELVGAFPHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
+WMLEPSL + + AK Y DPLQ ALDRGS L F+ SPLVLDY+ +KF T+P W SRNPF TI+ ++ Y S G T+ ES S+L G LLR LQGWD P + E V PH T+LPGLQF+LAGI+G P TFF VPV+RF +E SY+
Sbjct: 66 QWMLEPSLLVEKINKAKKYRGPVYKDPLQSALDRGSDALEFLFSPLVLDYVHVKFAGTLPPWWSRNPFQPTINEGFFEYDDFEVYDLAKLLRGSGNDQAKGGNEPSGTPTASTGSTAGESLGSFLWQLPGSFMSFLLRVLQGWDH-PRSNESVWYYV---PHLTILPGLQFSLAGILGKPETFFKVPVIRFVYESFSYL 260
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.430e-30 Identity = 74/189 (39.15%), Postives = 100/189 (52.91%), Query Frame = 2
Query: 5 WMLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCYSCGETSEESSWL-------QSSAGG-------------LLRFLQGWDRVPGTLEPASELVGA---------FPHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
W+LEP L + K YN + DPLQ ALDRGS L FV+SPLVLDY+ +KF T+P+W S + TI+ +Y Y+ + S L +++ GG LLRFLQGW+ P + P + G PH+T+LP LQF+LAG++G P F+ VP VRF E Y+
Sbjct: 816 WILEPRLLNRQATVGKRYNGPDYMDPLQRALDRGSKALDFVDSPLVLDYIHVKFSCTLPNWASSSSIPKTINAGFYTYNAFDEYNFSEVLSVRPEPPEANPGGGSQPCNSKKWDDRLLRFLQGWN--PTDMNPEEQPRGKSTRRSDRNKLPHTTILPMLQFSLAGLIGKPAVFYNVPAVRFALEFLHYL 1002
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.140e-29 Identity = 73/191 (38.22%), Postives = 99/191 (51.83%), Query Frame = 2
Query: 5 WMLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCYSCGETSEESSWL-------QSSAGG---------------LLRFLQGWDRVPGTLEPASELVGA---------FPHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
W+LEP + K YN + DPLQ ALDRGS L FV+SPLVLDY+ +KF T+P+W S + TI+ +Y Y+ + E L +++ GG LLRFLQGW+ P + P + G PH+T+LP LQF+LAG++G P F+ VP VRF E Y+
Sbjct: 816 WILEPRHLNRQATVGKRYNGPDYMDPLQRALDRGSKALFFVDSPLVLDYIYVKFSCTLPNWASSSSIPKTINAGFYTYTAFDEYEFWEVLSVRPGPPEANQGGALQPQPWNSKKWDDRLLRFLQGWN--PTDMSPEEQPRGRSTRRSDRNKLPHTTVLPMLQFSLAGLIGKPAVFYNVPAVRFALEFLHYL 1004
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.160e-26 Identity = 68/151 (45.03%), Postives = 84/151 (55.63%), Query Frame = 2
Query: 77 DPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCYSCG-------ETSEESSWLQSSAGG------LLRFLQGWDRVPGTLEPASE--LVGAFPHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
DPLQ AL +GS F+N+PLVLDYL+LK+ T P+ RNP TI+ + Y G E + GG LLR LQGWDR P + E L+ FPH+T+LPG QF LAG++G P FF VP VRF FE SY+
Sbjct: 1150 DPLQQALTKGSDAHDFINAPLVLDYLELKWKCTTPNLDRRNPLDYTINEGFSTYRSGNGKYTLPEKGVDIGDTFLERGGTTAEESLLRLLQGWDRGPTRVLRFKEKHLLHGFPHTTVLPGTQFLLAGLLGKPTDFFLVPFVRFMFETFSYL 1300
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 102 bits (255), Expect = 2.330e-22 Identity = 83/295 (28.14%), Postives = 113/295 (38.31%), Query Frame = 2
Query: 2 RWMLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCY-----------------SCGETSEESSWLQSSA-------GGLLRFLQGWDR--------VP-GTLEPASELV-----------------------------------GAF------------------------------------------------------------------PHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
+W+LEP+L + K Y + DPL+ ALDRGS L F+N+PLV DY+ +KF T+PSWTSRNPF T++ ++ Y + G EES L+++ LLRFLQGWD +P G + AS+ G F PHST+LPGLQF+LAG++G P TF+ VP +RF FEI +Y+
Sbjct: 883 QWILEPNLLVGKINTQKKYAGPDYLDPLRRALDRGSEALDFLNTPLVKDYVHIKFACTLPSWTSRNPFQPTVNEGFFKYDDFDTYPLSEVFSAPDENLGSKDEESRGLKAALKEQFLTKSFLLRFLQGWDHRDSLLKWNIPIGDIRFASKKFKSDTRASNNXXXXXXXXXXXXXXXXXXXXXPGCCGGRFKSIIPSWLLCCNGNVSGNAXXXXXXNARGDAHDSSAHXXXXXXXXXXXSSCRQPLWFNDKPKRWTIPHSTILPGLQFSLAGVLGKPETFYQVPAIRFVFEIFTYL 1177
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.750e-16 Identity = 62/167 (37.13%), Postives = 75/167 (44.91%), Query Frame = 2
Query: 56 YNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCYSCGET---SE---------------ESSWLQSSAGGLLRFLQGWDRVPGT-------LEPASELVGA--------------FPHSTLLPGLQFTLAGIVGNPVTFF 439
Y + DPL+ LDRGS GL VNSPLV DY+ +KF T+P WTSRNPF ++ Y Y ET SE E S Q + FL T ++P S A PHST+ PGLQF+LAGI G P TF+
Sbjct: 218 YKEPDYIDPLRRVLDRGSKGLDMVNSPLVRDYVHVKFTGTLPHWTSRNPFQPIVNEGLYKYDDFETYGLSEILSTPVKPPTANQEGEHSPAQKQGFISMTFLLTLPSQAPTPPMPVPPVQPVSATTNAQAPACRQKPTNQRRIPHSTMPPGLQFSLAGIQGKPHTFY 384
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 7.900e-9 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 2
Query: 368 PHSTLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASYM 484
PHST+LPGLQF+LAGI G P TF+ VPV+RF FEI SY+
Sbjct: 980 PHSTMLPGLQFSLAGIQGKPETFYKVPVIRFAFEIFSYL 1018
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.270e-7 Identity = 52/161 (32.30%), Postives = 71/161 (44.10%), Query Frame = 2
Query: 8 MLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQLKFWSTVPSWTSRNPFHDTIHTPYYCYSCGETSEESSWLQSSAGGLLRFLQGWDRVPGTLEPASELVGAFPHS---TLLPGLQFTLAGIVGNPVTFFAVPVVRFTFEIASY 481
MLEP LA P + PL A+ S + F+ +PLV+DYL+LKF + +P NPF +T + E + + L RF+ D + L G P S T LPGLQF LAG+ G FF VP +R ++ Y
Sbjct: 534 MLEPELAG--------LQPRDCAGPLAQAMQ--SRHVDFIYTPLVVDYLRLKFSAGLP-----NPFRET-----------DWRREHGRVDRN---LARFMVNEDE---SQLMVYILQGGCPDSPSWTYLPGLQFILAGVAGKTAAFFGVPAMRLALDVLVY 662 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig741.18678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig741.18678.1 >prot_F-serratus_M_contig741.18678.1 ID=prot_F-serratus_M_contig741.18678.1|Name=mRNA_F-serratus_M_contig741.18678.1|organism=Fucus serratus male|type=polypeptide|length=160bp MLEPSLASDFLKGAKTYNPSETPDPLQHALDRGSGGLAFVNSPLVLDYLQback to top mRNA from alignment at F-serratus_M_contig741:221383..222636+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig741.18678.1 ID=mRNA_F-serratus_M_contig741.18678.1|Name=mRNA_F-serratus_M_contig741.18678.1|organism=Fucus serratus male|type=mRNA|length=1254bp|location=Sequence derived from alignment at F-serratus_M_contig741:221383..222636+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig741:221383..222636+ >mRNA_F-serratus_M_contig741.18678.1 ID=mRNA_F-serratus_M_contig741.18678.1|Name=mRNA_F-serratus_M_contig741.18678.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig741:221383..222636+ (Fucus serratus male)back to top |