mRNA_F-serratus_M_contig740.18660.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: D8LDP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDP4_ECTSI) HSP 1 Score: 219 bits (559), Expect = 2.300e-70 Identity = 109/132 (82.58%), Postives = 120/132 (90.91%), Query Frame = 2
Query: 116 MKLFAFLLVVLMGVASAFVTPSAFTGSAMTAPRASRAASAVSATPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
MKLFAFLLVVL+G ASAFV+PSAF GSA+ APRA+RA S VSATPVMLDTYWEGKAPPS+VLGPAL +APS LG+VSL AFA GTY IHETNILHTV+PD IQP+YVAG++LVPISWGLHVASWIQKQNGK
Sbjct: 1 MKLFAFLLVVLIGAASAFVSPSAFKGSALAAPRATRATSKVSATPVMLDTYWEGKAPPSEVLGPALAKAPSAGLGVVSLAAFAAGTYCIHETNILHTVSPDNIQPLYVAGALLVPISWGLHVASWIQKQNGK 132
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A836C871_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C871_9STRA) HSP 1 Score: 142 bits (359), Expect = 4.090e-40 Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 2
Query: 134 LLVVLMGVASAFVTPSAFTGSAMTAPRASRAASAVSATPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
++ L+ +A A T SAF + +A+R+A A+ T DTYWEGKAPPS+VLGP + + PS ALG++SLI VGTYS+HE+NI HT+T DTI P Y+ GS+L P++WG HVASWIQKQNGK
Sbjct: 4 IMKCLLCLAMALATASAFMAPSPVMHKAARSAGALKMTE---DTYWEGKAPPSKVLGPVVSQIPSPALGVISLICLGVGTYSVHESNIFHTLTADTINPGYIIGSLLTPVAWGTHVASWIQKQNGK 126
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A7S1U023_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U023_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.360e-36 Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 2
Query: 170 VTPSAFTGSAMTAPRASRAASAVSATPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
V P+A A APRA R++ + T TYWEGK PPS VLGP L + PSG LG VS+I+ GTYS+HE+NILHT+ DT+ P++V GS+LVPISWGLHVA+WI K+NG
Sbjct: 14 VAPAAAFAPARKAPRAMRSSLKMEQTEA--PTYWEGKVPPSTVLGPVLSKTPSGLLGPVSIISLLAGTYSVHESNILHTLNADTVYPVFVIGSLLVPISWGLHVAAWINKENGN 125
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A4D9DAY0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAY0_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.410e-33 Identity = 73/135 (54.07%), Postives = 88/135 (65.19%), Query Frame = 2
Query: 116 MKLFAFLLVV--LMGVASAFVTPSAFTGSAMTAPRASRAASAVSATPVMLD-TYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
MK F LLV+ L G++SAF+ P A AP +R A +M D TYWEGKAP S VLGP L + PSG LG SL+A VG Y +HE+NI + +T D+I P YV GS L PISWG+HVA+WIQKQNGK
Sbjct: 1 MKTFGALLVLMALFGLSSAFM-PKAPVHKVAAAPVVARGR----AMKMMEDSTYWEGKAPSSAVLGPFLAKVPSGVLGPASLVALMVGAYCVHESNIFNILTVDSINPAYVLGSFLTPISWGMHVAAWIQKQNGK 130
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A7S2S169_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S169_9STRA) HSP 1 Score: 112 bits (280), Expect = 6.060e-28 Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 2
Query: 116 MKLFAFLLVVL-MGVASAFVTPSAFTGSAMTAPRASRAASAVSATPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
MKLF L +L +G+ASAF TPS + RA R V + DTYWEGKAPPS VLGP L + SG LG+ SL AVG+Y + N+ PD + P++V G+ L+PISWGLHVASWIQK+NGK
Sbjct: 22 MKLFGVLSTLLVLGMASAF-TPSPMARAPRFVARAGRQQQQV--VRMAEDTYWEGKAPPSTVLGPVLSKTNSGLLGLTSLAFLAVGSYCAVQNNLFSL--PD-VNPLFVLGANLLPISWGLHVASWIQKENGK 148
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A7S2DS21_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS21_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.260e-25 Identity = 70/144 (48.61%), Postives = 86/144 (59.72%), Query Frame = 2
Query: 83 DPFRWPLSTLKMKLFAFLLVVLMGVASAFVTPSAFTGSAMTAPRASRAASAVSATPV-MLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
DP R ST+ MKL F L + G SAFV TAPR + +V V M DTYWEG PPS VLGP L ++ SG LGI SL+AF+ G + + + I T I P++ A +VL+PISWGLHVASWIQK+NGK
Sbjct: 12 DP-RHSTSTM-MKLLMFFLTL--GAVSAFVP--------RTAPRFVQQTRSVQKASVRMEDTYWEGNFPPSNVLGPLLSKSSSGVLGIGSLLAFSGGAFGL-SSQIALTSQQLQISPLFCAMTVLIPISWGLHVASWIQKENGK 142
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A1X6NZL8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZL8_PORUM) HSP 1 Score: 105 bits (261), Expect = 2.840e-25 Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 2
Query: 257 LDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
+DTYWEGKAPPS VLG + PSG + S+++ A+G+Y ++++N+ +TP T++ Y+ S+L PISWGLHVASWIQKQN K
Sbjct: 51 MDTYWEGKAPPSTVLGLG-KNVPSGLYLLASVLSLALGSYGVYKSNLASPLTPSTVEAQYILASLLAPISWGLHVASWIQKQNNK 134
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: M2Y646_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y646_GALSU) HSP 1 Score: 102 bits (255), Expect = 2.170e-24 Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 2
Query: 245 TPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
T V DT+W GK PPS VLG E+ PS A I S++ VG+Y ++E+N+L +T TI P+YV GS+LVP SWGLHVA WIQ +NGK
Sbjct: 46 TVVAKDTFWTGKVPPSTVLGIG-EKVPSAAYIISSVVCLLVGSYCVYESNLLSPLTVTTINPLYVLGSLLVPYSWGLHVAGWIQLKNGK 133
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A7S2CAL6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAL6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.910e-22 Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query: 260 DTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
DTYWEG PPS VLGP L +APSG LG+VS + +G YS + N L ++ + YV G+ L+PISWGLHVASWIQK+NGK
Sbjct: 63 DTYWEGLYPPSSVLGPILSKAPSGLLGVVSGLFLGIGLYSA-QANDLSSL--PVVHWEYVVGANLLPISWGLHVASWIQKENGK 143
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Match: A0A2V3IUA9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUA9_9FLOR) HSP 1 Score: 95.1 bits (235), Expect = 1.760e-21 Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 2
Query: 221 RAASAVSATPVMLDTYWEGKAPPSQVLGPALERAPSGALGIVSLIAFAVGTYSIHETNILHTVTPDTIQPMYVAGSVLVPISWGLHVASWIQKQNGK 511
R AS+ PV + TYWEG+ PPS++LG + PS S IA +G Y ++++N+++ ++ +++ P ++ GS+LVPISWGLHVA WIQ +N K
Sbjct: 32 RVASSRRVAPVRMSTYWEGEYPPSEILGLGKD-VPSSLFVFSSAIALLLGCYCVYQSNLINPLSSESVNPQFIVGSLLVPISWGLHVAGWIQGKNNK 127 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig740.18660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig740.18660.1 >prot_F-serratus_M_contig740.18660.1 ID=prot_F-serratus_M_contig740.18660.1|Name=mRNA_F-serratus_M_contig740.18660.1|organism=Fucus serratus male|type=polypeptide|length=133bp MKLFAFLLVVLMGVASAFVTPSAFTGSAMTAPRASRAASAVSATPVMLDTback to top mRNA from alignment at F-serratus_M_contig740:213022..217590- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig740.18660.1 ID=mRNA_F-serratus_M_contig740.18660.1|Name=mRNA_F-serratus_M_contig740.18660.1|organism=Fucus serratus male|type=mRNA|length=4569bp|location=Sequence derived from alignment at F-serratus_M_contig740:213022..217590- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig740:213022..217590- >mRNA_F-serratus_M_contig740.18660.1 ID=mRNA_F-serratus_M_contig740.18660.1|Name=mRNA_F-serratus_M_contig740.18660.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig740:213022..217590- (Fucus serratus male)back to top |