mRNA_F-serratus_M_contig740.18664.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig740.18664.1
Unique NamemRNA_F-serratus_M_contig740.18664.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig740.18664.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.070e-28
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  454 FSMAAISMGLGGSEARGFSSAEFVGSCFRRGRKDGLLLHYVDKAPSDYPLEYESKIAGASSIDWSLMRKDLKVDALC 684
            FSMA  S GL GSE RG  SAEFVGSCFR+GRKDGLLL+YV+KAP DYP E ESK AGA+S+DWS+MRK LKVDA C
Sbjct:  120 FSMATFSGGLDGSEGRGIPSAEFVGSCFRKGRKDGLLLYYVEKAPRDYPFEVESKAAGAASLDWSVMRKHLKVDAFC 196
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BLAST of mRNA_F-serratus_M_contig740.18664.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.920e-27
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:  460 MAAISMGLGGSEARGFSSAEFVGSCFRRGRKDGLLLHYVDKAPSDYPLEYESKIAGASSIDWSLMRKDLKVDALC 684
            MA  S GL GSE RG  SAEFVGSCFR+GRKDGLLL+YV+KAP DYP E ESK AGA+S+DWS+MRK LKVDA C
Sbjct:    1 MATFSGGLDGSEGRGIPSAEFVGSCFRKGRKDGLLLYYVEKAPRDYPFEVESKAAGAASLDWSVMRKHLKVDAFC 75
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig740.18664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE4.070e-2875.32DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI8.920e-2774.67Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig740contigF-serratus_M_contig740:342565..343371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons2
Model size686
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932243.7816162-CDS-F-serratus_M_contig740:342564..3427941622932243.7816162-CDS-F-serratus_M_contig740:342564..342794Fucus serratus maleCDSF-serratus_M_contig740 342565..342794 +
1690964215.5251486-CDS-F-serratus_M_contig740:342564..3427941690964215.5251486-CDS-F-serratus_M_contig740:342564..342794Fucus serratus maleCDSF-serratus_M_contig740 342565..342794 +
1622932243.7997327-CDS-F-serratus_M_contig740:342915..3433691622932243.7997327-CDS-F-serratus_M_contig740:342915..343369Fucus serratus maleCDSF-serratus_M_contig740 342916..343369 +
1690964215.5389266-CDS-F-serratus_M_contig740:342915..3433691690964215.5389266-CDS-F-serratus_M_contig740:342915..343369Fucus serratus maleCDSF-serratus_M_contig740 342916..343369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig740.18664.1prot_F-serratus_M_contig740.18664.1Fucus serratus malepolypeptideF-serratus_M_contig740 342565..343369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig740.18664.1

>prot_F-serratus_M_contig740.18664.1 ID=prot_F-serratus_M_contig740.18664.1|Name=mRNA_F-serratus_M_contig740.18664.1|organism=Fucus serratus male|type=polypeptide|length=228bp
PGGAPTPAAAKGVAGPNRGKGSRVVGNKMELTPNTSDSSNRKRPAEESAH
SDIFDSDDGSLPSGSAKRARKSKSKIRMDGGGVSRGEGKENATKLGVGGA
KGGNALGSGSSKVQGKTPTPGASGAHKKRKANAVEKSGSTPPRKKRTLMQ
RFSMAAISMGLGGSEARGFSSAEFVGSCFRRGRKDGLLLHYVDKAPSDYP
LEYESKIAGASSIDWSLMRKDLKVDALC
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mRNA from alignment at F-serratus_M_contig740:342565..343371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig740.18664.1 ID=mRNA_F-serratus_M_contig740.18664.1|Name=mRNA_F-serratus_M_contig740.18664.1|organism=Fucus serratus male|type=mRNA|length=807bp|location=Sequence derived from alignment at F-serratus_M_contig740:342565..343371+ (Fucus serratus male)
CCAGGCGGTGCTCCGACACCGGCCGCGGCAAAAGGGGTAGCGGGACCAAA
CCGAGGCAAGGGATCTCGCGTGGTTGGCAACAAAATGGAACTTACTCCAA
ATACGAGCGACAGTTCGAACCGCAAACGTCCTGCCGAAGAGAGTGCGCAT
AGCGACATCTTCGACAGCGATGATGGGTCGCTTCCGAGCGGGAGTGCCAA
GCGCGCTCGCAAGAGCAAGAGCAAGATCAGGTATGTGTTATCTCCGGATA
CATTCTCCAATAATCAGTTGCGCCATGAATAATGAAAAAGCAGCTTAACC
AACTTTTTTGTTTTGTTAGGATGCCTTTGACCCGGCCTCCGATGATCGCA
GGATGGATGGTGGAGGCGTGTCACGAGGAGAGGGGAAGGAGAATGCAACT
AAACTAGGCGTTGGCGGAGCCAAGGGAGGAAACGCGCTAGGAAGCGGAAG
TAGTAAGGTTCAAGGGAAAACACCGACGCCTGGAGCGTCCGGGGCTCACA
AAAAGCGTAAGGCAAACGCGGTAGAAAAGAGTGGAAGCACTCCACCCCGC
AAGAAAAGAACGCTGATGCAACGTTTTTCGATGGCTGCAATTTCAATGGG
ACTGGGCGGGTCAGAGGCTCGTGGATTTTCGTCTGCAGAGTTCGTGGGCT
CCTGCTTCCGGCGTGGTAGGAAAGACGGACTGCTACTTCACTACGTGGAC
AAGGCGCCGAGCGACTATCCGTTAGAGTACGAGTCGAAGATCGCGGGCGC
ATCTAGTATAGACTGGTCTTTGATGCGGAAGGATCTAAAGGTTGACGCCC
TATGCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig740:342565..343371+

>mRNA_F-serratus_M_contig740.18664.1 ID=mRNA_F-serratus_M_contig740.18664.1|Name=mRNA_F-serratus_M_contig740.18664.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig740:342565..343371+ (Fucus serratus male)
CCAGGCGGTGCTCCGACACCGGCCGCGGCAAAAGGGGTAGCGGGACCAAA
CCGAGGCAAGGGATCTCGCGTGGTTGGCAACAAAATGGAACTTACTCCAA
ATACGAGCGACAGTTCGAACCGCAAACGTCCTGCCGAAGAGAGTGCGCAT
AGCGACATCTTCGACAGCGATGATGGGTCGCTTCCGAGCGGGAGTGCCAA
GCGCGCTCGCAAGAGCAAGAGCAAGATCAGCCAGGCGGTGCTCCGACACC
GGCCGCGGCAAAAGGGGTAGCGGGACCAAACCGAGGCAAGGGATCTCGCG
TGGTTGGCAACAAAATGGAACTTACTCCAAATACGAGCGACAGTTCGAAC
CGCAAACGTCCTGCCGAAGAGAGTGCGCATAGCGACATCTTCGACAGCGA
TGATGGGTCGCTTCCGAGCGGGAGTGCCAAGCGCGCTCGCAAGAGCAAGA
GCAAGATCAGGATGGATGGTGGAGGCGTGTCACGAGGAGAGGGGAAGGAG
AATGCAACTAAACTAGGCGTTGGCGGAGCCAAGGGAGGAAACGCGCTAGG
AAGCGGAAGTAGTAAGGTTCAAGGGAAAACACCGACGCCTGGAGCGTCCG
GGGCTCACAAAAAGCGTAAGGCAAACGCGGTAGAAAAGAGTGGAAGCACT
CCACCCCGCAAGAAAAGAACGCTGATGCAACGTTTTTCGATGGCTGCAAT
TTCAATGGGACTGGGCGGGTCAGAGGCTCGTGGATTTTCGTCTGCAGAGT
TCGTGGGCTCCTGCTTCCGGCGTGGTAGGAAAGACGGACTGCTACTTCAC
TACGTGGACAAGGCGCCGAGCGACTATCCGTTAGAGTACGAGTCGAAGAT
CGCGGGCGCATCTAGTATAGACTGGTCTTTGATGCGGAAGGATCTAAAGG
TTGACGCCCTATGCGATGGATGGTGGAGGCGTGTCACGAGGAGAGGGGAA
GGAGAATGCAACTAAACTAGGCGTTGGCGGAGCCAAGGGAGGAAACGCGC
TAGGAAGCGGAAGTAGTAAGGTTCAAGGGAAAACACCGACGCCTGGAGCG
TCCGGGGCTCACAAAAAGCGTAAGGCAAACGCGGTAGAAAAGAGTGGAAG
CACTCCACCCCGCAAGAAAAGAACGCTGATGCAACGTTTTTCGATGGCTG
CAATTTCAATGGGACTGGGCGGGTCAGAGGCTCGTGGATTTTCGTCTGCA
GAGTTCGTGGGCTCCTGCTTCCGGCGTGGTAGGAAAGACGGACTGCTACT
TCACTACGTGGACAAGGCGCCGAGCGACTATCCGTTAGAGTACGAGTCGA
AGATCGCGGGCGCATCTAGTATAGACTGGTCTTTGATGCGGAAGGATCTA
AAGGTTGACGCCCTATGC
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