mRNA_F-serratus_M_contig7365.18605.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7365.18605.1
Unique NamemRNA_F-serratus_M_contig7365.18605.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A1W6IYH0_SACJA (Carbonic anhydrase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A1W6IYH0_SACJA)

HSP 1 Score: 178 bits (452), Expect = 1.430e-53
Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNIE-CTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            VTDIIVCGHYGCGGVRAAMEN+D+GLLEHWLLNI    +   +EL+TI D+DERH+R VELNVQESCINLFANPIVQKKQA +S PKIHG VYDVATGLLKKLDIDFK
Sbjct:  169 VTDIIVCGHYGCGGVRAAMENVDHGLLEHWLLNIRNVQRLHLDELKTIPDVDERHKRLVELNVQESCINLFANPIVQKKQATSSQPKIHGWVYDVATGLLKKLDIDFK 276          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: D8LR72_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR72_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.460e-49
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNIE-CTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            VTDIIVCGHYGCGGVRAAMEN+D+GLLEHWLLNI    +   EEL+ I D+DE+ RR VELNVQESCINLFANPIVQKKQA +S PKIHG  YDV  GLLK+LDIDFK
Sbjct:  174 VTDIIVCGHYGCGGVRAAMENIDHGLLEHWLLNIRNVVRLHNEELQGISDMDEKSRRLVELNVQESCINLFANPIVQKKQATHSMPKIHGWAYDVGNGLLKELDIDFK 281          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A835ZBM8_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.170e-43
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNIE-CTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            VTDIIVCGHYGCGGVRAAMEN D+GLLEHWL++I    +    EL  I + +ERH+R VELNVQE+C+NLFANP+VQKKQA ++ P+IHG VYD+ +GLLK L IDF+
Sbjct:  106 VTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFR 213          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 142 bits (359), Expect = 2.750e-40
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V DIIVCGHY CGG++AA  N D+GL+EHWL NI +  +   EELE IE  + RHRR VELNVQE CINL+ANPIVQK Q   S P+IHG VYD+A GL+K+L IDFK
Sbjct:  125 VEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEEARHRRLVELNVQEQCINLYANPIVQKAQLATSLPRIHGFVYDIAEGLVKELPIDFK 232          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: H6WB75_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB75_VAULI)

HSP 1 Score: 143 bits (361), Expect = 5.860e-40
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNIE-CTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            VTD+IVCGHYGCGGV AAM+N D+GLLEHWL +I    +    EL  I D  +R +R VELNVQESC+NLF+NPIVQKKQA  S P+IHG VYD+ATG +K L IDFK
Sbjct:  140 VTDVIVCGHYGCGGVNAAMKNKDHGLLEHWLHHIRNVQRLHKSELVQIPDESQRFKRLVELNVQESCLNLFSNPIVQKKQATASQPRIHGWVYDIATGYVKDLKIDFK 247          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A7S2XTK6_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTK6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.560e-38
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAME-NLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V D+IVCGHYGCGGV+AA     D+GLLEHWL NI +  +   +EL TIED ++RH R VEL+VQE CINLFANPIVQ+ Q  +  P+IHG VYD+  G L++L+IDFK
Sbjct:  128 VRDVIVCGHYGCGGVKAASTIGTDHGLLEHWLRNIKDVIRVHQDELNTIEDEEKRHERLVELSVQEQCINLFANPIVQRSQVTHGYPRIHGFVYDIGNGYLRELEIDFK 236          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A7S1N9X7_9EUGL (Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9X7_9EUGL)

HSP 1 Score: 137 bits (346), Expect = 3.540e-37
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V DIIVCGHY CGGVRAA  N D+GL+EHW+ NI +  +    EL  +   + RHRR VELNVQE CINLFANPI+Q++QA +  P+IHG+VYDV  GLL+KLD+DFK
Sbjct:  220 VKDIIVCGHYECGGVRAAESNKDHGLVEHWIRNIRDVVRLHRNELAVLTG-EMRHRRLVELNVQEQCINLFANPIIQRRQAAHGLPRIHGMVYDVGEGLLRKLDLDFK 326          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A835YJA7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.540e-34
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V +II+CGHY CGGV+AAM N D+G++E W++ I +  +   +EL  I+D D  HRR VELNVQE  + L+ANP+VQ+ QA+   P IH LV+DV  GLLK+LD+DFK
Sbjct:   85 VENIIICGHYDCGGVKAAMRNHDHGIIEQWIMGIRDVARYHRKELRAIKDPDLVHRRMVELNVQEQALKLYANPVVQRSQAQGGKPHIHALVFDVGEGLLKELDVDFK 192          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: F0WR55_9STRA (Carbonic anhydrase n=2 Tax=Albugo TaxID=65356 RepID=F0WR55_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.940e-33
Identity = 64/108 (59.26%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V DIIVCGHYGCGGVRAAMEN   GLL++WL NI +  +   EE+E IED D+R  R VELN  E CIN+F   +VQ+ QAK   P+IHGLVY++  G LK+LD++FK
Sbjct:  117 VKDIIVCGHYGCGGVRAAMENKHMGLLDNWLRNIRDVCRIHLEEVEAIEDSDKRLDRMVELNTIEQCINMFKIGLVQRHQAKYGFPRIHGLVYNIKDGQLKELDVNFK 224          
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Match: A0A7S2CER7_9STRA (Carbonic anhydrase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CER7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.970e-33
Identity = 54/108 (50.00%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNI-ECTKAPPEELETIEDIDERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLKKLDIDFK 321
            V DIIV GHY CGGV+ A  N D G++ +WL +I +  ++  +EL  IE    RHRR VE+NV++ C+NLF+NP++QK+QA++S P+IHGLVYD++ G+++ +D+DF+
Sbjct:   61 VKDIIVLGHYDCGGVKCAAANQDVGIVSYWLHHIRDVFRSNMDELNAIECDLARHRRMVEMNVEQQCLNLFSNPVIQKRQAEHSLPRIHGLVYDISDGIIRSIDVDFR 168          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7365.18605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W6IYH0_SACJA1.430e-5381.48Carbonic anhydrase n=2 Tax=Saccharina japonica Tax... [more]
D8LR72_ECTSI3.460e-4976.85Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835ZBM8_9STRA6.170e-4366.67Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9IM72_HETAK2.750e-4064.81Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
H6WB75_VAULI5.860e-4065.74Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A7S2XTK6_9STRA4.560e-3860.55Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S1N9X7_9EUGL3.540e-3762.04Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica... [more]
A0A835YJA7_9STRA3.540e-3454.63Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
F0WR55_9STRA3.940e-3359.26Carbonic anhydrase n=2 Tax=Albugo TaxID=65356 RepI... [more]
A0A7S2CER7_9STRA3.970e-3350.00Carbonic anhydrase n=1 Tax=Dictyocha speculum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7365contigF-serratus_M_contig7365:16786..17657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.7e-40
Seed eggNOG ortholog2880.D8LR72
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG0288@1,KOG1578@2759
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-06_004120.1
EC4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932232.810665-CDS-F-serratus_M_contig7365:16785..169711622932232.810665-CDS-F-serratus_M_contig7365:16785..16971Fucus serratus maleCDSF-serratus_M_contig7365 16786..16971 -
1690964210.3588784-CDS-F-serratus_M_contig7365:16785..169711690964210.3588784-CDS-F-serratus_M_contig7365:16785..16971Fucus serratus maleCDSF-serratus_M_contig7365 16786..16971 -
1622932232.8601177-CDS-F-serratus_M_contig7365:17522..176571622932232.8601177-CDS-F-serratus_M_contig7365:17522..17657Fucus serratus maleCDSF-serratus_M_contig7365 17523..17657 -
1690964210.3751447-CDS-F-serratus_M_contig7365:17522..176571690964210.3751447-CDS-F-serratus_M_contig7365:17522..17657Fucus serratus maleCDSF-serratus_M_contig7365 17523..17657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7365.18605.1prot_F-serratus_M_contig7365.18605.1Fucus serratus malepolypeptideF-serratus_M_contig7365 16786..17657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7365.18605.1

>prot_F-serratus_M_contig7365.18605.1 ID=prot_F-serratus_M_contig7365.18605.1|Name=mRNA_F-serratus_M_contig7365.18605.1|organism=Fucus serratus male|type=polypeptide|length=107bp
VTDIIVCGHYGCGGVRAAMENLDYGLLEHWLLNIECTKAPPEELETIEDI
DERHRRFVELNVQESCINLFANPIVQKKQAKNSTPKIHGLVYDVATGLLK
KLDIDFK
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mRNA from alignment at F-serratus_M_contig7365:16786..17657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7365.18605.1 ID=mRNA_F-serratus_M_contig7365.18605.1|Name=mRNA_F-serratus_M_contig7365.18605.1|organism=Fucus serratus male|type=mRNA|length=872bp|location=Sequence derived from alignment at F-serratus_M_contig7365:16786..17657- (Fucus serratus male)
GTGACTGACATAATTGTGTGCGGGCACTACGGCTGCGGCGGGGTTAGGGC CGCCATGGAGAACCTGGACTACGGCCTGCTAGAGCACTGGCTGCTCAACA TCGAATGTACGAAGGCTCCACCAGAGGAGCTCGAGGTGAGAACTATTGGC ATTACTATGAAACTCGAAGCCGGTGACGCGTGGGCATTAGTTTGGCCTGG TCCGAGAAGCCTTTGTTTTACAATATTCGAAATCGTTTAGTCTCCAGTCC TGGGTGCGTTGGAGGTTACGATTGGAGAGCGATGTCTCGGTGGTATCGAA TTATTATTAACCAGCATTGCGTGTTAACGGCAGGTGCGACAAGATTACTA TACTGCTGTACATGGGTTGTTGATGAAACTAGCCCTTCCGGGCAAATATA ATAAAAGACGGTCGGGGCGCGGTATTGTACGCCTACATTGTCTACCAGCT CGCCTCAGGTTTGTGGGGTTTTAGGTTGAATGACCTCAAGGCATCAGACT CACTTGATGTGAGGTATTCATGATGAAATATATGCTCGTATACCTTCTGT TTGTCGGAAGAATGTCCGGTTTTAGTTCCGTGAACGGCGCTCTTCAATCG TGCAACGTACGCCGAAAATGATGTTTTAGTTTTTGAGACAAAGCGCAATT ATTAGTACCTCCTTGATCCGTCGCCTCGTCAAACAGACCATCGAAGATAT AGATGAGAGGCACCGACGCTTCGTGGAGCTGAACGTACAAGAATCGTGCA TTAACCTCTTCGCAAACCCGATAGTCCAGAAGAAGCAGGCAAAAAATTCG ACGCCAAAGATCCACGGATTGGTGTACGACGTGGCGACAGGCTTACTCAA AAAGCTGGACATCGACTTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7365:16786..17657-

>mRNA_F-serratus_M_contig7365.18605.1 ID=mRNA_F-serratus_M_contig7365.18605.1|Name=mRNA_F-serratus_M_contig7365.18605.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig7365:16786..17657- (Fucus serratus male)
GTGACTGACATAATTGTGTGCGGGCACTACGGCTGCGGCGGGGTTAGGGC
CGCCATGGAGAACCTGGACTACGGCCTGCTAGAGCACTGGCTGCTCAACA
TCGAATGTACGAAGGCTCCACCAGAGGAGCTCGAGGTGACTGACATAATT
GTGTGCGGGCACTACGGCTGCGGCGGGGTTAGGGCCGCCATGGAGAACCT
GGACTACGGCCTGCTAGAGCACTGGCTGCTCAACATCGAATGTACGAAGG
CTCCACCAGAGGAGCTCGAGACCATCGAAGATATAGATGAGAGGCACCGA
CGCTTCGTGGAGCTGAACGTACAAGAATCGTGCATTAACCTCTTCGCAAA
CCCGATAGTCCAGAAGAAGCAGGCAAAAAATTCGACGCCAAAGATCCACG
GATTGGTGTACGACGTGGCGACAGGCTTACTCAAAAAGCTGGACATCGAC
TTCAAGACCATCGAAGATATAGATGAGAGGCACCGACGCTTCGTGGAGCT
GAACGTACAAGAATCGTGCATTAACCTCTTCGCAAACCCGATAGTCCAGA
AGAAGCAGGCAAAAAATTCGACGCCAAAGATCCACGGATTGGTGTACGAC
GTGGCGACAGGCTTACTCAAAAAGCTGGACATCGACTTCAAG
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