mRNA_F-serratus_M_contig736.18603.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig736.18603.1
Unique NamemRNA_F-serratus_M_contig736.18603.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Match: D7FUZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ1_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 6.060e-77
Identity = 180/382 (47.12%), Postives = 218/382 (57.07%), Query Frame = 2 
Query:   20 TMSHLLLLLVLSIVELKPLESFFVGPRVSGGRLDMR--SRVGCRWDCSPGTSRPKTFISRAIDGRWEQRRHPPLGPGPSRPTPLHAATTGESSGPVRSQQGDPKKQKRGPREHIPLGQ--------GGE------------------------EGDDTEE--PWETFSASSAASSLASPTFEERLKFGRIMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQTLRNAYDFIVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMTDLQYRFTYEFVKYLDAEVERLEK------------KVDRKKTG-PGGGD--EVLNVLKIVRTRVCAQVDLTMGEDVAILTRMLSYDDRYMMKATL 1012
            TMS LLL+LVLS V    +ESF + P  S   LD R  S    R   S     P++  SR      E+                  AT G S    R +Q   +K KR PR+H+P+          GGE                         GD + +  P     A  A   L  PT  +R +F RIME+VL  EKEEELP +L++HV FLLSVDVT LTNDLI  EPT+ R+ TLRNAY+FIV+FLE MVEST+ +QKEN+ LLR IIE AK  P  F+++M +LQ RFT+EFVKYLD EVERLEK            KV  +K   P GGD  EVLNV++IVRTRVCAQ+DL MGEDVA+LTRMLSYDDR+MM+A L
Sbjct:   45 TMSQLLLVLVLSAVGFPSMESFLITPTTSAAWLDPRPASHQQRRRSSSAIFPSPRSRCSRK-----ERPTXXXXXXXXXXXXXXXDATEGPSQQQQRPKQSVRRKTKRRPRQHVPVDDVDSPSSEVGGEIGAGFVGDPFVDLIAPTEYAASDASGDSSRDSTPLPPSPAGGATPPLPEPTTRDRQRFERIMEEVLEEEKEEELPAILSRHVDFLLSVDVTALTNDLIRQEPTLTRVNTLRNAYEFIVSFLESMVESTVDVQKENQTLLRLIIEAAKTSPEVFDKRMKNLQDRFTFEFVKYLDGEVERLEKVEKDMAEKKKKRKVPAEKDDMPMGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAAL 421
[Close]
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 3.370e-73
Identity = 173/386 (44.82%), Postives = 221/386 (57.25%), Query Frame = 2 
Query:   20 TMSHLLLLLVLSIVELKPLESFFVGPRVSGGRLDMRSRVGCRWDCSPGTSRPKTFISRAIDGRWEQRRHPPLGPGPSRPTPLHA------ATTGESSGPVRSQQGDPKKQKRGPREHIPLGQ--------GGE------------------------EGDDTEE--PWETFSASSAASSLASPTFEERLKFGRIMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQTLRNAYDFIVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMTDLQYRFTYEFVKYLDAEVERLEK------KVDRKKTGP---------GGGDEVLNVLKIVRTRVCAQVDLTMGEDVAILTRMLSYDDRYMMKATL 1012
            TMS LLL+++LS V    LESF + P  S   LD R     +        R ++ ++ +   R  +   P         TP         AT G S    R +Q   +K KR PR+H+P+          GGE                         GD + +  P     A +A   L  PT  +R +F RI+E+VL  EKEEELP +L++HV FLLSVDVT LTNDLI  EPT+ R+ TLRNAY+FIV+FLE MVEST+ +QKEN+ LLR IIE AK  P  F+++M +LQ RFT+EFVKYLD EVERLE+      +  RK+  P         G G+EVLNV++IVRTRVCAQ+DL MGEDVA+LTRMLSYDDR+MM+A L
Sbjct:  386 TMSQLLLVMILSAVGFPSLESFLLTPTTSTSWLDTRPASHQQ------RRRSRSAVATSPHSRCSRNERPACFRAT---TPXXXXXXXXDATEGSSQQQQRPKQSVRRKTKRRPRQHVPVDDVDSPSSEVGGEVGAGFVGDPFVDLIAPTEYAASDVSGDSSRDSTPLPPSPAGTATPPLPEPTIRDRQRFERIVEEVLEEEKEEELPAILSRHVDFLLSVDVTALTNDLIRQEPTLTRVNTLRNAYEFIVSFLESMVESTVDVQKENQTLLRLIIEAAKTSPEVFDKRMKNLQERFTFEFVKYLDGEVERLEQAEKDLAEKKRKRKVPAEKDDMPMGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAAL 762
[Close]
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Match: A0A836CI99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI99_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.190e-24
Identity = 61/173 (35.26%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  476 RIMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQTLRNAYDFIVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMTDLQY--RFTYEFVKYLDAEVERLEKKVDRKKTGPGGGDEVLNVLKIVRTRVCAQVDLTMGEDVAILTRMLSYDD 988
            R+M+D+L  E+EE+LPG+++ HV  LL+ D + L  ++ +   +     TL NAYDF+++F+E       A+Q  N++LL E++  A+ G + FE  +   +   R     + YLD E  RL            GGD  L  + ++R RV A++D TMGE+V++L R+L +DD
Sbjct:    4 RVMDDLLDAEEEEQLPGIVSPHVYALLASDCSALFEEMRAEAASATARDTLANAYDFLLSFMEEFTAHAAAIQARNQKLLAELLGAARRGALAFEEAIEAAREASRLDVTLLHYLDGEAARLR--------AAAGGDAALGAVGVIRARVAAEIDRTMGEEVSVLNRLLGFDD 168
[Close]
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Match: L1K220_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K220_GUITC)

HSP 1 Score: 68.6 bits (166), Expect = 1.670e-9
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 2 
Query:  467 KFGRIMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQTLRNAYDF--IVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMTDL----QYRFTYEFVKYLDAEVERLE 838
            KF  I+ ++     E E P ++  +V FLL  D+ RL+N + S E  MD     R+   F  ++ FLE  V     +  +NR LL+EI++ +  G    ++KM D+    + R+T EF++YLDAE+ER++
Sbjct:   26 KFRDILHEIQSAN-ETEYPRIVGSNVEFLLRTDLERLSNTIQSEE--MDETSRARHEQSFQLVLDFLEVFVNEIKQIWDDNRALLKEILQASSKGMQALDKKMEDMIAGREPRYTPEFLRYLDAEIERMK 152
[Close]
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Match: A0A7S1XRM3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRM3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.120e-9
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = 2 
Query:  479 IMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQTLRNAYDFIVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMTDLQYRFTYEFVKYLDAEVERLEKKVDRKKTGPGGGDEVLNV--LKIVRTRVCAQVDLTMGEDVAILTRMLSYDD 988
            IM+ +L  + EE++  ++ ++V FLL            S  P +   + L + +  I+ FLE  V +T  +++  +E++R +IE AK G   F  K+        ++F++YLD E+ER+ K  +     P   +   N+  L+++R RV A +D   G   A LTR+L+ +D
Sbjct:   81 IMQAMLEAD-EEQILAVMGENVRFLLDPKTPERFKKARSYYPHVADDE-LDDVFTAIIDFLEEFVNTTAGVERSYQEMVRALIEAAKEGDDAFNAKINSFGAALNFQFLQYLDGEMERMSKIEEAASGVPTTDENAPNIALLRMLRVRVNATLDEAFGPYFAELTRILAIED 250
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig736.18603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUZ1_ECTSI6.060e-7747.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUY2_9PHAE3.370e-7344.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CI99_9STRA1.190e-2435.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1K220_GUITC1.670e-934.62Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S1XRM3_9STRA4.120e-929.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig736contigF-serratus_M_contig736:296998..309604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue1.2e-66
Seed eggNOG ortholog2880.D7FUZ1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E654@1,2SCWG@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008730.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1014
Cds size990
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig736.18603.1prot_F-serratus_M_contig736.18603.1Fucus serratus malepolypeptideF-serratus_M_contig736 297020..309604 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932232.622502-UTR-F-serratus_M_contig736:296997..2970191622932232.622502-UTR-F-serratus_M_contig736:296997..297019Fucus serratus maleUTRF-serratus_M_contig736 296998..297019 +
1690964210.2498767-UTR-F-serratus_M_contig736:296997..2970191690964210.2498767-UTR-F-serratus_M_contig736:296997..297019Fucus serratus maleUTRF-serratus_M_contig736 296998..297019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932232.6409228-CDS-F-serratus_M_contig736:297019..2971751622932232.6409228-CDS-F-serratus_M_contig736:297019..297175Fucus serratus maleCDSF-serratus_M_contig736 297020..297175 +
1690964210.2642534-CDS-F-serratus_M_contig736:297019..2971751690964210.2642534-CDS-F-serratus_M_contig736:297019..297175Fucus serratus maleCDSF-serratus_M_contig736 297020..297175 +
1622932232.6625803-CDS-F-serratus_M_contig736:307933..3083491622932232.6625803-CDS-F-serratus_M_contig736:307933..308349Fucus serratus maleCDSF-serratus_M_contig736 307934..308349 +
1690964210.2737923-CDS-F-serratus_M_contig736:307933..3083491690964210.2737923-CDS-F-serratus_M_contig736:307933..308349Fucus serratus maleCDSF-serratus_M_contig736 307934..308349 +
1622932232.6768546-CDS-F-serratus_M_contig736:308570..3086931622932232.6768546-CDS-F-serratus_M_contig736:308570..308693Fucus serratus maleCDSF-serratus_M_contig736 308571..308693 +
1690964210.2843993-CDS-F-serratus_M_contig736:308570..3086931690964210.2843993-CDS-F-serratus_M_contig736:308570..308693Fucus serratus maleCDSF-serratus_M_contig736 308571..308693 +
1622932232.689162-CDS-F-serratus_M_contig736:309089..3091711622932232.689162-CDS-F-serratus_M_contig736:309089..309171Fucus serratus maleCDSF-serratus_M_contig736 309090..309171 +
1690964210.2934985-CDS-F-serratus_M_contig736:309089..3091711690964210.2934985-CDS-F-serratus_M_contig736:309089..309171Fucus serratus maleCDSF-serratus_M_contig736 309090..309171 +
1622932232.703262-CDS-F-serratus_M_contig736:309391..3096041622932232.703262-CDS-F-serratus_M_contig736:309391..309604Fucus serratus maleCDSF-serratus_M_contig736 309392..309604 +
1690964210.3078663-CDS-F-serratus_M_contig736:309391..3096041690964210.3078663-CDS-F-serratus_M_contig736:309391..309604Fucus serratus maleCDSF-serratus_M_contig736 309392..309604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig736.18603.1

>prot_F-serratus_M_contig736.18603.1 ID=prot_F-serratus_M_contig736.18603.1|Name=mRNA_F-serratus_M_contig736.18603.1|organism=Fucus serratus male|type=polypeptide|length=330bp
MSHLLLLLVLSIVELKPLESFFVGPRVSGGRLDMRSRVGCRWDCSPGTSR
PKTFISRAIDGRWEQRRHPPLGPGPSRPTPLHAATTGESSGPVRSQQGDP
KKQKRGPREHIPLGQGGEEGDDTEEPWETFSASSAASSLASPTFEERLKF
GRIMEDVLGTEKEEELPGLLTKHVGFLLSVDVTRLTNDLISLEPTMDRIQ
TLRNAYDFIVAFLEGMVESTMALQKENRELLREIIEVAKIGPVEFERKMT
DLQYRFTYEFVKYLDAEVERLEKKVDRKKTGPGGGDEVLNVLKIVRTRVC
AQVDLTMGEDVAILTRMLSYDDRYMMKATL
back to top

mRNA from alignment at F-serratus_M_contig736:296998..309604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig736.18603.1 ID=mRNA_F-serratus_M_contig736.18603.1|Name=mRNA_F-serratus_M_contig736.18603.1|organism=Fucus serratus male|type=mRNA|length=12607bp|location=Sequence derived from alignment at F-serratus_M_contig736:296998..309604+ (Fucus serratus male)
CTTACCTGCTGGTGCGGCTACCATGTCTCATCTCTTGCTTCTCCTGGTTC
TTTCTATTGTTGAGTTGAAGCCGTTGGAGTCGTTCTTCGTTGGACCGAGA
GTGAGCGGGGGCCGCTTAGATATGAGGTCGAGGGTTGGGTGTCGATGGGA
TTGCTCACCAGGGACATCACGACCAAAGGTGTGTTTGTGGGTCACGGCAG
ACTGCTTGTTATGTTGACCTTGACCCCACAAGCGCTCTTGGGCGTAATAT
GGGTATGGCTTCTGGGTGCTAGAAGGGACTGGTGTCGAGACTGTTTGTGC
AATGTGCTGTCGTCCTGATGCTTCAACACCAACATTGAGTTGTGTTTGCC
GTCTGTATAATATTAGACTGATACTCTGGTATGGTACTAAATTGTCACAT
TGCACATAACCGCGCAATCCGGCCCTGTCCTTCAACTTATAGTCACTGGA
AATGGCTATTTGCCCCACCGGTGGGCCATTCCCAAATTTACCCCACCACC
TGGATCTCGCGTCAGAAGACACGGTTGGTCACAGTACATGCATGAGTGTG
TTGGCGCGTCGCAGGGCTATCATGGGGTCTATCGTGCAGCCCAAACGGTC
CTGTCTACGTGCTGTTACGGCCGGTGGGGTGATTGGTGTTTTCGGGTATG
TAAGGGCAAATAGCCATACATACCAGAAAACACCAACCACCCCACCGGCC
GTGGTAGCACGTAGACAGGACCGTTTAGGCTGCAAGGTAGACCCCACGAT
AGCTAACCCTAACCCTAACACACCCATGCATGTACTGTGACCAACCAAGT
CTTATGACGCGAGATCCAGGTGGGGGGGTAAACAAAAGAATAGCCCACCG
GTGGGGCAAATAGCCATACCCATAGTCATTCTATCCCCGGTACTTTCAAC
ATACCCACTTCATACCGGAAAGAGAGGCGAATATTAATTGGTCCATGGTG
ACCTGCCAAGACAACAGCCGTTCGGAACTACCTTGAGGTTTACTGGCCCT
GTGCCGGCGGAGTCTCGGCAGTGAACGCCATCGGTACGCAACTGCGCGAC
CCGATAAACTCGGGACTGACCCGATGGCGTGTGGCGGTTTCATAAATGGA
CGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCATC
CTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGT
CTCGCGAGACCAAATTCTCAGGCACGAATGCGGACAGGGGAATATTCATT
TTCCTTGTTCAGCTGACCATGACAATGAGCAGCATTGGCAACCTTACCAG
GTTGATCCATACTCTGCGATATGTTATGACCACACATACATGTACCAGAT
TCAGCCTGAGTATGGAGATAAGCAGGCTAACGCGGGATGGGACTGCCGAA
ACCGTCTCGCGAGACCAAATTCTCAGGCACTAACTCGGACGGGGAAAGAT
TCATTTTTCCTGTTCAGCTGACCATGTGCAGGATTGGCAACCTTACCAGG
TTGATCCATACTCTTGCTATATGTGTGTGACCATACATACATTGCCCTCT
CACAGCCCCAGGGTGTTGAGTGGGAATGGCCTGGTCGGCGTGAACCCGAC
GATGAACACTCCCCGGCATCGTAGGGGAGGGGGGATAGCGTCCTCTTCAA
ATTTAGTTTTGTACCTGTATTGGTACCCCTATATATATCTGTATTTCATT
TTATTTTGTGACTCAGCTCCCGAGTTTGGAGCGATGGGCTCTACTTCCTT
GTTGGGGTTTTTTCTTGCCTCAACCTGCTTCTTGTTTCCTGAACTTGTCA
TTATTATTATTTTATTTTATTTTTTGGCTAATGTTGGAACCTTCTCTGGG
TCTTTTTATTTTATTTTATTATTTTTCTGTACCTTAGTTTGGGTTAGCCT
GTGACCACGGAAATTCGTTTCTTTGCCTTGAAGAGTAAGAAAGAGAAGGT
ACTGGATAGAGGTCAGAACGGTTTTTAATGTGAAGACAACAACAACAACA
ACAATAGTGTTTTTCTTGTTGCTGTCAGAGGGAAATTGTGTGGTACGTAA
GGTTGGGAACATTAGCGGTAATACTACTACTACTGTTTAAGAAAAATCTG
AACGCATCTCTCTATAAACCTTCTTAGCATCTAGCATCCACCCGATTAGG
GGGGGAAACTGTGAAAGTGTTTAGGTGGGAAGATAGACTGTAAAGAGAAA
AACTCTTCATGGGATTTAATTGGGTTATTAATAGGTTAGTTCCCCAATGG
TATTAATCGTAGCATCGGGTCTACAGTATAGTATAATACAGTATAAATTG
GGGGGAAACACGCCCGTGACACTTAACACTAACCTAAACTATGACTAATT
CGTTGTAGTCTAGACCTTTTAGTCCATGTAGCCTGTACTTTTAAATTTAA
CTTGATAATAGGCAGTTTCGCACTCGAATTTTGCGTTCAGCAGACTGGCC
ATCAACCAGTGTGGTTGCCAGTCCTGCTCGTGGTCAGCTAGCTGAACAGG
GGAAACGCATTTTCTGTTGATCCTCGTTCGTGCCTGAGAACTTGGTCTTC
CGAGACGGATTCGGCCGTTCCGCCGCCCCGCCTCAGCCCGCTTATTCTTT
ATCCTCAGGCTGAACCTGATGCTTACTCTTACTCTTAGTTTAGTCAATGG
ATGTCTCCTCTCCTTCTTCCTGCTTTCCGCGATACGTACTACTACTATAC
AAGTATACTATGACCAAATTCCCAGGCGCGAACGCGGACAGGGGAATATT
CTTTTCTCTGTTTAGCTGACCACGAGCAGGATTGGCAACCTTACCAGGTT
GATCCATACTCTTGCTATATGTGTGACCATACATAGAGGTAACTACTATT
ACGATTTAAGCCTTAGGCCTCGGAAAACGCAGCGGTCAACTCAACCACAC
CGAGATCAAGACGTTTCCTCGAAAGTTTTCCAAATGAGGCATGTTGCTTC
GGCGTCTCTGCCCAATCAGGGGCCCGTTTATTGCTTTGCGACGGTGCCGC
CGACGGGTCGACTCCAACTACACCGAGATCAAGACTTCTTCAACAAACGC
GTTTCAATCGGAGGCACGCTTTCTTCAGCGCCTACCCAATCAGAGCCCTG
TTTATTATTTGCGACAGTACCAACAGTGGCATGAAGAGGTTTTGTATTTG
CAACCTGTGATCCGACCTAAACGTTTCACGTTTTGACATTTTCCCCTGAC
TGGGGGATGCTCAGAAGGTATAGGCGCGCTCTGACTTTTCTTTTAAACTA
CGGTGGGCTTTTGTATTTGCCGCCTTTGATCCGACCGAAACGTTTTGACA
TTCTGACTGGGGGATGCCTAGAAGGTATAGGCACGTTCTGTTTTTTTTCT
TCAAACTGCGATGGGCTTCTCCCCGACATTGTTGACCTCAACCCCTCTCA
GATTTATGTTTTCTTCAGCGTCGATCCAATCAGAGGCCTGtTTTTTTGTT
TCCAACAGTGCCGGAGAGGAATAAACAGTTCACCGCGATATTGTACTGAC
TGTTGACCCAATGTTACTACCATCGGGGAACCCGTTCAAATGCCATGAAA
GAGGTTTTGTATTTGCGGCCTTTGATCCCACCTAAACGTTTTGACATTTC
CCCACCTGACAGGGGGGATGCTCAGAAAGGTCTAGGCGTGTTCTGATTTT
CCTTTAAACATTAAAAATGTTCCCACACAGCCCAGCAGGCAGCTCGGCAG
GAGTTTGGGTCTGTGCGTGGCCTGAAACATGTTTCCCCTGTTTGGGGGGA
TGCTCAGAAGGGCTAGGCGCGTTCTGATTTTCTTTAAACCTTAATTAAAT
ATGTTCCACACACAGCCCATCAGCGATATTACAACGAGGCAGCTCGGCAG
AAGTTTGGGTCTGTGCGTAGCCTAGAGCGCACGGAGCCCTGACTGGGGAT
GCTCAGAAGGTCTAGGCGCGTTCTGATTTTCCTTTATAACTTAAAAATAA
TTGTTCCACACAACCCAGCAGCAAATGCCATGAAAGATGTTTTGTATTAT
TTGCAGCCTTTGATCCCACCTAAACGTTTTGACATTTCCCCCCCTGACTG
GGGATGCTCAGAAGGTCTAGGCGCGTTCAGATTTTTCTTGAAACATTAAA
AATATTCTACACACAACCCAGCAGCGATATTACAATTAGGCAGCTCGCCA
GGAGTTTGGGTCTGTGCGTAACACCTTACCCGGTTGAACAATACTCATGC
TATTATTTGTGTGACCATACAACATACCAGTATAATTTTTAAGAAGGTAG
TAATAATATACTGTCCAATGTAAAACAAGTCCGGAACAATAGTTCCGGCG
ATGGGACAAATATCGTACTGCTGTTGCAGACTAAGTAAATCGTTAGTACA
CTGCATGGCGATTAATGCAAGTGTACAGCATAACGGTACTAGGTTTCTCC
CCGGTACGGACTGAACTCAACAATAACGATATGTTCGGAAGGCATTGCCC
ACCATACTTCTGAGTCTCATGGGTTTCAGAATAATCTGGTGTATGAGCAT
TGCGGCATATCGAAGTCCACTATTAATAGGTTTCGGTCGTGTTTCCTTTT
CGAGTGGCGAGTGAATTTTCCAACAGTTGCTACTGCTTTGCAAGCTGGGG
GGCAAGGTTAGCTGCCAGCGTGTGTTCATTTTTCCGTCGATGCTCCGGGA
TATTTGTAGTGAGGGTTTACCGTTCAACACCATTTTTTCTCCTATGCGTA
GGGATTTTTGCCCTTCTGCCCGGGAAAACTTTAGGAAGGGTTTACTGTTC
AACGTGATTCTTTATGTAAAGGAAATGAGCAGCTTGCGTCCCTAGGTATT
TTTTGGGGTATCCCGCTTTCTTTATACCATGCTTCTGCCGTTTTACCCGG
GAGCTTGCGTTTGTGCGTACAACATGCATTGTGTATGTACAGCTTGGACT
CCTACGTTTTGCGATACATTTGATACATTTTTATACCAATTTTCTGTCGT
TGTAGGCAGAAAACTGCTGTTTCTTAAGTCGCCAGTTTTCAGTGTCGTCC
TGCGTTCCATGAATACTGCCCAACATTTCTCATGGCGTTCAGCTACGGTT
TTGAGTTGTTCCTTGCTTCAATGTGATTTTTAGATTGACCCTTTCCAACA
ACAGAGGACGGGTTCAAATTTTAAATTTTGTTCCAACAACTATATTCATA
ATAAACCATACCACGCAGCAGGTACAGGAAGGGTAGAACCGCGCGATTTT
ATTGTGTTGATTGATGAACCTTGATTCTTCTTCTTTGCTTTATTTTGATT
GACCTCGCGTGTCGAGTGGGAGCGATGGCCTCTTTATCTCCGTTGTCCAA
CATGTCGCCTGCGACGTCTCACTTTTTAGGGCCTAATATATATATTATAC
ATTTTCTTCCGTTTATTTCTCATTGATTTTTCATAAGATATGTTCCCTTT
TTCGCGTCAGTTGGACCAGTACGGATCTCAGAAGGTACAGAGCAGAGAAC
GGAACGTTTTTTCATGTGAAGAAATCAAAGCCTACACGCCTTCAGATGAT
TCTTTAAACAACAATACGCTGGGCGTGCGCCTTCTTTCACTCCCCTTCAC
GGCGTTGCCACTCGATACTATACTGAATATACTGTACTGTGCATACTACG
GTATGCAGTTCGTTCGTACCGCTCAATCAATCCAAACACAAACACCTCCT
CGCACTCTCGACCGAGGACGCCGAGACTCGCCTCGTGGCCACTTCGGATG
CAGTTCGTGCGTACCGCTCGATCGAAACACAAAACACCCCCTCGCACTCT
AGGACGTGAGGCCTCACGTCGTAGCCACTTCGTATGCAGCTCGTGCGTAC
CGCTCAAATCGAAACACAAAATAAGTCTCCTCGCACTCTCAACGGAGGAC
GGAGGGCCTTACGTCGTGGCCACTTGGTATGTAATATTAATAGTATGCAG
TTCGTACGTACCGCTCAATTCAAACGCAAACACCTCCTCGCACTCTCCAC
GGAGGACAGGGGGCCCCCAGGCCTCCGCGTCCGAAGCAGGTCTATAGGTG
CATTCTGATTTTGCTTTAAACACTACTGTTCCCACCTAAACATTTTGACT
GTTCAGGAGGTTTAGCTAGATGTGTGTTGTGTTTTCTTCCCATCCATTCT
GGACATCAAGTTCGTTGGATGTACCAGCCGGGGTCACACAGGAGGAAGGT
CACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCGTGCCTTAATTTT
TATCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTGAAGTCG
AATTTTGTGTACTAACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTA
TTTTGGTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAAC
TCACGTCCCAACGTGTCAGAAGGTTGCGAGGTACCTACTGAGCTACCGGG
GCGATGAATTTTCTTTAAACATTAAGGATGCTCAGAAAGAGGTCTAGCGC
GTTTCCACGAACGCAGCAGCGATATTTTCACCCGTTCAAATGCCATGAAA
GAGGTTTTGAATTTGCAGCCTTTGATCCCGCCTAAACGTTTTGACATTTT
TCCCCCTGGCTGGGGATGCTCAGAATAATAAGGTCTAGGCGCGTTCTGAT
TTTCTTACAAACATTAAAAATGTTCCACACACAACCCATCAGCGATATTA
CAATGAGGCAGCTCGGCAGGAGTTTGGGTCTGTGCGTAACACCTTACCGG
TTAGTTCGTGGGTACCGCTCGATCGAAACACTCTAGAAGCCTGTTTATTA
TTTCGCAATATTAGTGCCGGCGATGGAATGAAGAGTATTTGCAGCCTTTG
ATCCGACCCTAAACGTTTTGGCATTTTCCCCACTGACTGGGGGATGCTCA
GAAGGTCTACGTACGTTTTGTTTTTGCCTTAAACTACGATGGGCTTCTCT
CTTTTGTATTTGCAGCATTTGATCCCACCTACTAAACGTTTTGACATTTC
CCCTCCCTGACTGGAGGATGCTCATAAGGTCTAGGCGTGTTCTGATTTTT
CTTTCAACAGTAAATATGATGCACTAGATGAGTTTTCTTTAAACATTAAG
GATGCTCAGAAAGAGGTCTAGGTGCGTTTCCACGAACGAACGCAGCAGCG
ATATTTTCACCCGTTCGTACCACTCGCTCGCAACACAAAACACCTCCTCG
CACTCTAGGACGGGAGGCCTCACTTCGTATAGCCACTTCGTATGCAGCTC
GTGCGTACCGCTCAACCGAAACACAAAATAAACCTCCTCTCACTCTCAAC
GGAGGCCGGAGGGCCTGACGTCGGCCACTTGGTATGTACTATTAATAGTA
TGCAGTTCGTGCGTACCGCTAAATTCAAACACAGACACCTCCTCGCACTC
TCCTCGCACTCTCCACGGAGGACGGGGGGCCCCCAGGCGCCCGCGTCCGG
AGCCCTTGTAATATATACTATTAATAAGGCGTCCATCTATACCGCCAACC
GCCATCAAGTCAGTCCCGAATTTATCGGGTCCGGCAACTACGTACAGTGC
CGATTGTGTTTACCGCCGAGAGTCCGCCGGCACAGTAAAGGGCCAGTAGT
CATAGTCCTCAAGGTAGCTCGAGTAACGGGTGCTGCCTATTGATTAAACT
GACATACCTTGGTATTGATTAAACCCCATAGACGAAGAATTAGTGTGCGC
CCCTTCTTGCTCACACCCAATAATATAGTAATATACTCAGCATAGTATTG
TTAATAATGTTATTGATACAGTGGACACGTATGTGCGATACAGACAAACT
GTTTCGGACGCGTGACAAGTGCTCGCGTTGCAAATTAAATGTTGAACAAT
GTACAGTGTACAGGTGGTACTTGTGCCTCGTACGGTATAGAGTAGGACTA
TTAATATTATTAATAGTATCAATAGCTCAGCTCTTTAGTTCTTAATAAAG
TGAGATACTATTATACCACCATGCCCAGCTCCCTGCCATCCACCTCGTCT
TTCCCCATGAAAAAGCCTTAGAGTTCTATATGAAAACCGAGGGGACTCTT
TTCAACTTGTGCTACAAATTGATGGTAGAGTATTCAGCGTACCAGTAGTG
TACTTACTCTCTGTGATTGATCCTCTTCTTCTCTTCTCCCTTGTCCTGAA
AGTGATAACTACTAGTATATACGTAACGCTCAACGCCTCTTTTGAGATGT
TTCCGTGACAACGATCATTGATGATCCCCTCAAGGGAGGACCAAATAGAG
TACTGGTAGGTAATATTAATAGTAATACCGGAGTAGTTAAGAATGATTTG
TAGCACGGCAGGGCCCGATTGCGCGGTTATATGTAGATACGCAATCGCAC
AAGGCACATTTACTGCTGCTGTAGGAGTAGTTTGAAGACTGATTTTGGAT
ATCTAAGGGGATGGCAAACAAAGGGCACATAGAGTCTACACTACTGTCTG
ATTTTGGAAATACAAGGGAAGATAGGATACCCTGTCTGATTTTGGAAATA
TATGCAGGAATGGCGAACAAAGTGTGTATACCCTGTTTACTTCCGAACGT
ATTAGAGTATCCGGAAAAAAACACACGTACCTGGTATAGTCCGCCTGCAG
GGCGTTGCGATAAAATCGATTGGGCTTATCGTGGAAACCCGTTTTTGGCG
AGAATCCGCACGGTATACAAATAGAGCTACGTTTCTACCTTATTCTTGAC
GTTTACCCTTTCCTGGCGATACAAAAACTTATCTATACAAAAACCTACCT
CGAGTAGTTTTTTTAAAGATGTGTAAGGCATATAGAATTTAGTTTCCCCC
TCCCGCAATTGGTGTTTTGACACTCTCTACTATTAATAGCGCTGTTGCTT
TGACAACCTGGCGCACACGTGTACAGTGTTTTTGAGGGCTTTCTGAACAT
GAAATGCAAGCTGCGCCTCGGGCACCCCTGTGGCGATGAACTCGCGCCGC
CTCGAAATAGGGGACATTTTTCCTACCACGAAGCTAAAAAGAACGGCGGC
CGAGCGTTGCTTCCTTGTGGTTGGGAACAGGCTTGTGGTCGGACACAAGG
GTCACTAGCGAGAGGTGCAAGGCTTATACCGTCGTTAAATTGGCGGTCAG
AATAATGGCGAGGAGCCTTAAGGTTGCCACGCCATGATACGCGCTTGCAA
GCAGAACTAGACCGTAGCGTTCGCCAGCAGATTGGAGAGACCACCACGAA
CTACGGAGTGGGTGCGCTTATTTTTTAGGGATGTCGATCATCAATTCCCA
GATTCTCCAAGCTGGCACGGCAATTGTATCGCTTACTTGCAATGCAATAG
CCGCGATAGCCGCTAAGGTTGGAATGCGTTTGGAATTGGTTGGTTTCTGC
ACAGCATTCAGCAGAAGAACACCGTCAACACGGAATGTACGTGCCTCACA
AACGTGACTCGCGAACTATGACTTTCAGGGGAAAGTCAAGGCGGCTTGTC
CCAGGGCAAGGCTTTTCTCAGGGGAAGGCGCCTGGCTGATGCCTCGCTCG
GCTTGTGCGCTAGAGCGCAAGCTACTACAACGACTTACTGCTGCATGTAG
CACACCACCGTTGTAGCGCGCAGGACAAATCCCTCGGACCAACAGCGAAC
TACTACGGTACAGAGGATGCACTTGTACGATCTCCGCGGGGAGTGATGCA
AGCACCTACCTTGTCATCAACCTTGCCAGCTCTATGTAATGCTCCTCGAA
GTGAAGTTCGTGGCAGATAACATGGGGTTTGTGTAGCCGCGGTAGCTTGT
ACGCCCCAAGCAAAGTCGGGCATGCATCACAACATGTAAAAAAAAAGTTG
TGGCATGCATCCAAAGTACATATTTCAACTCTCCCCCCGCCCCGCGGAGT
TTCTGACGCACGAGTCTCGAAGGACCCCCGTTTGGTTCATCATAAAGGAA
CCTGCCAGGGCTTAAGCTAGGTTCTCCAATTTACCACGTTAAACGGTTAT
CGCCAGAAAACCGAGAAAAAATGTAACGCTTGATGCTTTGAGTTGCCTTT
TTTTCGATACCCGTCTGTGGCCATACGTGGACAGGGTAGATAACCTTTTA
AGGCCAATTAAAAAACAGCACATAATCCTTTGAAGTTCAAACCTCCAAAC
AACAAAACATTTATTTTATTATATTTACTACGTACTTAGGAGCCAGAGTA
CCCCACGATTATCAGTGGCCAACGATTGAGGTGGGGCGACGCCTCCGTCA
AGTCGTTCCTCTTCGGCGTGCTCCCGTGTAGGAACACCGCAACAAGTAGG
TTACCGTGTTGTATGCTCCTTAATATTATACAAATACCCAGAATAGCTCT
ATTAATACCAGGGCATGGGCATGCTGCTGTTGCTCATCTGTGAGACTGAC
TCCAATAAGCTCAAGAGGGTCATTTCGGGCACTTCAAAGATTAGTCTCGA
GTAGAATGCTGCTCTAGAACTGACTGAATAACGCACAGTACCCACTCGAC
CCAGGATATCATCCCCACCCGACAAGTGACAGACGCAGATGGGAGTCGCC
TGAGGTACCACAAGTGACACAGTGACAGTACCTTAAAATGAGAAGGAAGG
TTCCACAAGTCGAAAACACTTTTCACCAGCAGTGCTCCGTCGACCTTCAC
GGGGATTCCGAACGAAAGCCTGCCCAGGACTTTTGACATTCTCACGCGGA
CACTTGGTATCGAGAACACCAAGCGGGAAGTGACCTTTCGGCCTTCCTCG
TCTGTTTTACCACCTCTGGTTAGCTCGGCATGGCCCAGCCATTGCAAGGT
GTTGAAGGTTCAGTAACGCGAGAGACAGCCAAGCCCGAGTTTATTTTGAC
CGAAGTTAGGTTCGTGGTATTAGTACTGCATTTTCCACCAATCTCTGTGC
CATTATTACTGCATTTTAATGCCGATATCGCCCCTCCCCCCCAAGCCGCC
CCTATACTAAACTAAACTAAAACCCATATCGTTCCCACTCCCCGCCATGA
ATCTTCCTCCTTGTCATATGTGCTTGGCCTCTGAAGACCTTTATATCCCG
CGCTATCGACGGGCGCTGGGAGCAACGCCGCCACCCTCCGCTCGGCCCGG
GACCATCACGCCCAACCCCGCTTCATGCAGCCACGACCGGAGAGAGCAGT
GGCCCCGTCCGGAGCCAGCAAGGGGACCCCAAAAAACAGAAAAGGGGACC
CAGGGAGCACATCCCTTTGGGGCAGGGCGGTGAAGAAGGGGACGATACTG
AAGAGCCATGGGAAACCTTCTCGGCGTCGAGCGCGGCTTCATCCCTTGCG
TCGCCAACGTTCGAAGAACGGCTCAAGTTCGGGCGCATCATGGAGGACGT
TCTAGGCACCGAGAAGGAAGAGGAGCTGCCAGGGTTGTTGACCAAGCACG
TTGGTTTTTTGCTGTCTGTGGACGTGACGCGGCTTACGAATGACCTCATC
AGGTAATGGTCGTGTCGCTGATGGGGCAGCGCGTTGAGAGACTTACAAAA
GCTGATATTTGGGAAACAGTGTATTGATCCTAGAAGCTATAAACGTAAAC
TGTACAAAAAGACCACAGCCGTTCAGCGCAACGTGCTCGCGCCCCTTCGC
AGACAGCAGTTACCTCGTCACGCTGTCGCACGGTGCCTGTTGCGCGCTCG
TTTCCCTCTCCCGACTTTGGCAGTCTAGAGCCGACAATGGATCGTATACA
GACGCTGCGCAACGCTTACGACTTCATCGTGGCTTTTCTGGAAGGAATGG
TAGAGTCCACCATGGCGTTGCAGAAGGAAAACCGCGAACTGTTGAGGTGC
AAGAGAACGAGGAGAACCAGCCATCATAATTGCCGCCGCGAGCTTGTTGC
CTAAGCGAAAATGCCTTTGACACCTCATTTCCCGTATTTTTGACACTACA
GTAACAGTAAGCGTAGTCAGTACAGTAAGTCCACTCGAATCGTCTGATTG
AAGCTGTATTGTCCCGGATGACATTGGTCCTCCTGACATGCTTGTGGCAG
TCTGGATGGAATGGGAACAACATACAGTATATTAACGCGCAGCATTCTGT
CGGTTTTCAACGCCGCTTGACCGTCCGTTCCTTTTGCCAATGATGGGTTC
AATTGAACATCTTCACTCTCTACCTGACACAAAAACGAGCGGCGCATCGT
GGTTCCTTCCCCCCCCATCCTTTGGCGGCTTGGATCGGTCAGAGAAATCA
TCGAGGTTGCCAAGATTGGACCGGTCGAGTTCGAGCGGAAGATGACTGAT
CTCCAGTATCGTTTCACGTACGAGGTGGGCTTACGTCAATCAGATGAAAC
AACGACGGCCCGCTTAGTCTAACGCAAAAAAGTGCATGCTCCCCCGACGG
TTTATTATGGTGAATTTTCCAGCGCGCCCATGTTTGTATTATTTTGTTTT
GAAGAATCAAGTCCCGCACCACGACGACGGTCAGTCGGTGAGATTGCAAT
TCCGCATCGACCTCATTTACCCCGCCTCAATGTATCGTCCGCAGTTCGTC
AAGTACCTGGACGCGGAGGTGGAAAGATTGGAGAAGAAAGTCGACAGGAA
AAAAACTGGCCCCGGTGGGGGGGACGAGGTGCTAAACGTCCTGAAGATCG
TGCGGACCCGGGTTTGCGCGCAGGTGGATCTCACGATGGGCGAGGACGTG
GCCATCCTCACTCGCATGCTCAGCTACGACGACCGATACATGATGAAGGC
TACGCTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig736:296998..309604+

>mRNA_F-serratus_M_contig736.18603.1 ID=mRNA_F-serratus_M_contig736.18603.1|Name=mRNA_F-serratus_M_contig736.18603.1|organism=Fucus serratus male|type=CDS|length=1980bp|location=Sequence derived from alignment at F-serratus_M_contig736:296998..309604+ (Fucus serratus male)
ATGTCTCATCTCTTGCTTCTCCTGGTTCTTTCTATTGTTGAGTTGAAGCC
GTTGGAGTCGTTCTTCGTTGGACCGAGAGTGAGCGGGGGCCGCTTAGATA
TGAGGTCGAGGGTTGGGTGTCGATGGGATTGCTCACCAGGGACATCACGA
CCAAAGATGTCTCATCTCTTGCTTCTCCTGGTTCTTTCTATTGTTGAGTT
GAAGCCGTTGGAGTCGTTCTTCGTTGGACCGAGAGTGAGCGGGGGCCGCT
TAGATATGAGGTCGAGGGTTGGGTGTCGATGGGATTGCTCACCAGGGACA
TCACGACCAAAGACCTTTATATCCCGCGCTATCGACGGGCGCTGGGAGCA
ACGCCGCCACCCTCCGCTCGGCCCGGGACCATCACGCCCAACCCCGCTTC
ATGCAGCCACGACCGGAGAGAGCAGTGGCCCCGTCCGGAGCCAGCAAGGG
GACCCCAAAAAACAGAAAAGGGGACCCAGGGAGCACATCCCTTTGGGGCA
GGGCGGTGAAGAAGGGGACGATACTGAAGAGCCATGGGAAACCTTCTCGG
CGTCGAGCGCGGCTTCATCCCTTGCGTCGCCAACGTTCGAAGAACGGCTC
AAGTTCGGGCGCATCATGGAGGACGTTCTAGGCACCGAGAAGGAAGAGGA
GCTGCCAGGGTTGTTGACCAAGCACGTTGGTTTTTTGCTGTCTGTGGACG
TGACGCGGCTTACGAATGACCTCATCAGACCTTTATATCCCGCGCTATCG
ACGGGCGCTGGGAGCAACGCCGCCACCCTCCGCTCGGCCCGGGACCATCA
CGCCCAACCCCGCTTCATGCAGCCACGACCGGAGAGAGCAGTGGCCCCGT
CCGGAGCCAGCAAGGGGACCCCAAAAAACAGAAAAGGGGACCCAGGGAGC
ACATCCCTTTGGGGCAGGGCGGTGAAGAAGGGGACGATACTGAAGAGCCA
TGGGAAACCTTCTCGGCGTCGAGCGCGGCTTCATCCCTTGCGTCGCCAAC
GTTCGAAGAACGGCTCAAGTTCGGGCGCATCATGGAGGACGTTCTAGGCA
CCGAGAAGGAAGAGGAGCTGCCAGGGTTGTTGACCAAGCACGTTGGTTTT
TTGCTGTCTGTGGACGTGACGCGGCTTACGAATGACCTCATCAGTCTAGA
GCCGACAATGGATCGTATACAGACGCTGCGCAACGCTTACGACTTCATCG
TGGCTTTTCTGGAAGGAATGGTAGAGTCCACCATGGCGTTGCAGAAGGAA
AACCGCGAACTGTTGAGTCTAGAGCCGACAATGGATCGTATACAGACGCT
GCGCAACGCTTACGACTTCATCGTGGCTTTTCTGGAAGGAATGGTAGAGT
CCACCATGGCGTTGCAGAAGGAAAACCGCGAACTGTTGAGAGAAATCATC
GAGGTTGCCAAGATTGGACCGGTCGAGTTCGAGCGGAAGATGACTGATCT
CCAGTATCGTTTCACGTACGAGAGAAATCATCGAGGTTGCCAAGATTGGA
CCGGTCGAGTTCGAGCGGAAGATGACTGATCTCCAGTATCGTTTCACGTA
CGAGTTCGTCAAGTACCTGGACGCGGAGGTGGAAAGATTGGAGAAGAAAG
TCGACAGGAAAAAAACTGGCCCCGGTGGGGGGGACGAGGTGCTAAACGTC
CTGAAGATCGTGCGGACCCGGGTTTGCGCGCAGGTGGATCTCACGATGGG
CGAGGACGTGGCCATCCTCACTCGCATGCTCAGCTACGACGACCGATACA
TGATGAAGGCTACGCTATTCGTCAAGTACCTGGACGCGGAGGTGGAAAGA
TTGGAGAAGAAAGTCGACAGGAAAAAAACTGGCCCCGGTGGGGGGGACGA
GGTGCTAAACGTCCTGAAGATCGTGCGGACCCGGGTTTGCGCGCAGGTGG
ATCTCACGATGGGCGAGGACGTGGCCATCCTCACTCGCATGCTCAGCTAC
GACGACCGATACATGATGAAGGCTACGCTA
back to top