mRNA_F-serratus_M_contig735.18582.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig735.18582.1
Unique NamemRNA_F-serratus_M_contig735.18582.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig735.18582.1 vs. uniprot
Match: A0A6H5KRX1_9PHAE (Homeobox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.780e-19
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = -3 
Query:   21 NDVDLLSSFFMSWRNDHDPFDFGVGSVADGTFGGRKPNFEQLLLFRSHRLMQVEAVSIAIGMPYSSGASE----RQRFNLIASTVTNKARAKVAERTNSTVERIRAL 329
            +D D LS F  S R        G+GSVADGTFGGRK   E+L+LFRSHRL+Q EAV +AIG  +SSG ++    R+R  L+++ V  + R KV E+TN+ VE +RAL
Sbjct:  105 DDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVAIGPLHSSGGADAAYVRKRLRLVSTAVERQLRLKVLEQTNAAVEGVRAL 211
[Close]
BLAST of mRNA_F-serratus_M_contig735.18582.1 vs. uniprot
Match: D7FSL4_ECTSI (Transcription factor protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.810e-18
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:   21 NDVDLLSSFFMSWRNDHDPFDFGVGSVADGTFGGRKPNFEQLLLFRSHRLMQVEAVSIAIGMPYSSGASE----RQRFNLIASTVTNKARAKVAERTNSTVERIRAL 329
            +D D LS F  S R        G+GSVADGTFGGRK   E+L+LFRSHRL+Q EAV +AIG  + SG +     R+R  L+++ V  + R KV E+TN+ VE +RAL
Sbjct:   26 DDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVAIGPLHPSGGANAAYVRKRLGLVSTAVERQLRLKVLEQTNTAVEGVRAL 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig735.18582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRX1_9PHAE8.780e-1950.47Homeobox domain-containing protein n=1 Tax=Ectocar... [more]
D7FSL4_ECTSI4.810e-1849.53Transcription factor protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig735contigF-serratus_M_contig735:351517..352387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size871
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig735.18582.1prot_F-serratus_M_contig735.18582.1Fucus serratus malepolypeptideF-serratus_M_contig735 351547..352281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932228.7494597-UTR-F-serratus_M_contig735:351516..3515461622932228.7494597-UTR-F-serratus_M_contig735:351516..351546Fucus serratus maleUTRF-serratus_M_contig735 351517..351546 +
1690964208.298812-UTR-F-serratus_M_contig735:351516..3515461690964208.298812-UTR-F-serratus_M_contig735:351516..351546Fucus serratus maleUTRF-serratus_M_contig735 351517..351546 +
1622932228.7827208-UTR-F-serratus_M_contig735:352281..3523871622932228.7827208-UTR-F-serratus_M_contig735:352281..352387Fucus serratus maleUTRF-serratus_M_contig735 352282..352387 +
1690964208.3182478-UTR-F-serratus_M_contig735:352281..3523871690964208.3182478-UTR-F-serratus_M_contig735:352281..352387Fucus serratus maleUTRF-serratus_M_contig735 352282..352387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932228.7696006-CDS-F-serratus_M_contig735:351546..3522811622932228.7696006-CDS-F-serratus_M_contig735:351546..352281Fucus serratus maleCDSF-serratus_M_contig735 351547..352281 +
1690964208.308944-CDS-F-serratus_M_contig735:351546..3522811690964208.308944-CDS-F-serratus_M_contig735:351546..352281Fucus serratus maleCDSF-serratus_M_contig735 351547..352281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig735.18582.1

>prot_F-serratus_M_contig735.18582.1 ID=prot_F-serratus_M_contig735.18582.1|Name=mRNA_F-serratus_M_contig735.18582.1|organism=Fucus serratus male|type=polypeptide|length=245bp
MRSTVELVLSATFARALLVTVLAMRLKRCLSEAPEEYGIPMAIETASTCI
NRWLLKSNNCSKLGFLPPKVPSATDPTPKSKGSWSFLQLIKNEDSRSTSF
RTTARSKLTVRFWACSGACATRFDGHAESQKASVVPIAPWLCRWQETPPS
STQPPPPPPLPSLPEALLLPPPPLAANLASSMYHTVLLGDPTAFPVGSND
VIIGYIYYPEGNATCPNTTTDRKMKSMRQRGRQIHEPSKPTNAR*
back to top

mRNA from alignment at F-serratus_M_contig735:351517..352387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig735.18582.1 ID=mRNA_F-serratus_M_contig735.18582.1|Name=mRNA_F-serratus_M_contig735.18582.1|organism=Fucus serratus male|type=mRNA|length=871bp|location=Sequence derived from alignment at F-serratus_M_contig735:351517..352387+ (Fucus serratus male)
TTTAACATCCCGTTTTTTGCCAACGCCCGAATGCGCTCGACGGTAGAGTT
GGTCCTCTCTGCCACCTTTGCCCGCGCCTTGTTAGTAACTGTACTGGCGA
TGAGGTTGAAGCGCTGCCTTTCGGAAGCGCCCGAAGAATATGGCATACCT
ATGGCGATCGAGACAGCCTCCACTTGCATTAACCGGTGGCTCCTGAAAAG
CAACAATTGCTCGAAGTTGGGTTTCCTCCCGCCAAAGGTTCCGTCCGCCA
CCGATCCCACCCCAAAATCGAAAGGATCGTGGTCATTCCTCCAACTCATA
AAAAATGAAGACAGTAGATCGACGTCGTTCAGGACAACAGCTCGATCAAA
GTTGACGGTCAGATTCTGGGCGTGCAGCGGGGCGTGCGCGACAAGGTTCG
ATGGACACGCTGAATCCCAAAAAGCTAGTGTCGTCCCAATCGCGCCATGG
TTATGTCGCTGGCAGGAGACGCCCCCAAGCTCCACACAGCCGCCACCACC
GCCGCCGCTGCCGTCACTACCAGAGGCCCTACTGCTGCCACCACCTCCAC
TCGCTGCAAATCTCGCTTCCTCGATGTACCATACCGTTCTATTGGGCGAC
CCGACGGCCTTCCCGGTAGGATCAAACGATGTCATCATCGGATACATATA
TTATCCTGAAGGCAACGCGACTTGTCCAAATACTACTACCGATCGGAAAA
TGAAGTCGATGCGCCAGAGGGGTCGACAGATCCACGAGCCTTCAAAGCCC
ACCAACGCACGTTGACGATATCAGGTAACGATCAATCAATGAGCGGTGTG
GTAGATATGCCTCTTCTTCCTGCTCGTCAGTTCGGCGGTTAAACGAAGGA
AGACAGATAGATGATGGAAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig735:351517..352387+

>mRNA_F-serratus_M_contig735.18582.1 ID=mRNA_F-serratus_M_contig735.18582.1|Name=mRNA_F-serratus_M_contig735.18582.1|organism=Fucus serratus male|type=CDS|length=1470bp|location=Sequence derived from alignment at F-serratus_M_contig735:351517..352387+ (Fucus serratus male)
ATGCGCTCGACGGTAGAGTTGGTCCTCTCTGCCACCTTTGCCCGCGCCTT
GTTAGTAACTGTACTGGCGATGAGGTTGAAGCGCTGCCTTTCGGAAGCGC
CCGAAGAATATGGCATACCTATGGCGATCGAGACAGCCTCCACTTGCATT
AACCGGTGGCTCCTGAAAAGCAACAATTGCTCGAAGTTGGGTTTCCTCCC
GCCAAAGGTTCCGTCCGCCACCGATCCCACCCCAAAATCGAAAGGATCGT
GGTCATTCCTCCAACTCATAAAAAATGAAGACAGTAGATCGACGTCGTTC
AGGACAACAGCTCGATCAAAGTTGACGGTCAGATTCTGGGCGTGCAGCGG
GGCGTGCGCGACAAGGTTCGATGGACACGCTGAATCCCAAAAAGCTAGTG
TCGTCCCAATCGCGCCATGGTTATGTCGCTGGCAGGAGACGCCCCCAAGC
TCCACACAGCCGCCACCACCGCCGCCGCTGCCGTCACTACCAGAGGCCCT
ACTGCTGCCACCACCTCCACTCGCTGCAAATCTCGCTTCCTCGATGTACC
ATACCGTTCTATTGGGCGACCCGACGGCCTTCCCGGTAGGATCAAACGAT
GTCATCATCGGATACATATATTATCCTGAAGGCAACGCGACTTGTCCAAA
TACTACTACCGATCGGAAAATGAAGTCGATGCGCCAGAGGGGTCGACAGA
TCCACGAGCCTTCAAAGCCCACCAACGCACGTTGAATGCGCTCGACGGTA
GAGTTGGTCCTCTCTGCCACCTTTGCCCGCGCCTTGTTAGTAACTGTACT
GGCGATGAGGTTGAAGCGCTGCCTTTCGGAAGCGCCCGAAGAATATGGCA
TACCTATGGCGATCGAGACAGCCTCCACTTGCATTAACCGGTGGCTCCTG
AAAAGCAACAATTGCTCGAAGTTGGGTTTCCTCCCGCCAAAGGTTCCGTC
CGCCACCGATCCCACCCCAAAATCGAAAGGATCGTGGTCATTCCTCCAAC
TCATAAAAAATGAAGACAGTAGATCGACGTCGTTCAGGACAACAGCTCGA
TCAAAGTTGACGGTCAGATTCTGGGCGTGCAGCGGGGCGTGCGCGACAAG
GTTCGATGGACACGCTGAATCCCAAAAAGCTAGTGTCGTCCCAATCGCGC
CATGGTTATGTCGCTGGCAGGAGACGCCCCCAAGCTCCACACAGCCGCCA
CCACCGCCGCCGCTGCCGTCACTACCAGAGGCCCTACTGCTGCCACCACC
TCCACTCGCTGCAAATCTCGCTTCCTCGATGTACCATACCGTTCTATTGG
GCGACCCGACGGCCTTCCCGGTAGGATCAAACGATGTCATCATCGGATAC
ATATATTATCCTGAAGGCAACGCGACTTGTCCAAATACTACTACCGATCG
GAAAATGAAGTCGATGCGCCAGAGGGGTCGACAGATCCACGAGCCTTCAA
AGCCCACCAACGCACGTTGA
back to top