mRNA_F-serratus_M_contig733.18553.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig733.18553.1
Unique NamemRNA_F-serratus_M_contig733.18553.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig733.18553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig733contigF-serratus_M_contig733:193021..199329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1372
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig733.18553.1prot_F-serratus_M_contig733.18553.1Fucus serratus malepolypeptideF-serratus_M_contig733 193194..198997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.5794754-UTR-F-serratus_M_contig733:193020..1931931622932224.5794754-UTR-F-serratus_M_contig733:193020..193193Fucus serratus maleUTRF-serratus_M_contig733 193021..193193 +
1690964206.4519734-UTR-F-serratus_M_contig733:193020..1931931690964206.4519734-UTR-F-serratus_M_contig733:193020..193193Fucus serratus maleUTRF-serratus_M_contig733 193021..193193 +
1622932224.6956406-UTR-F-serratus_M_contig733:198997..1993291622932224.6956406-UTR-F-serratus_M_contig733:198997..199329Fucus serratus maleUTRF-serratus_M_contig733 198998..199329 +
1690964206.5303164-UTR-F-serratus_M_contig733:198997..1993291690964206.5303164-UTR-F-serratus_M_contig733:198997..199329Fucus serratus maleUTRF-serratus_M_contig733 198998..199329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.5941834-CDS-F-serratus_M_contig733:193193..1933721622932224.5941834-CDS-F-serratus_M_contig733:193193..193372Fucus serratus maleCDSF-serratus_M_contig733 193194..193372 +
1690964206.4638734-CDS-F-serratus_M_contig733:193193..1933721690964206.4638734-CDS-F-serratus_M_contig733:193193..193372Fucus serratus maleCDSF-serratus_M_contig733 193194..193372 +
1622932224.609144-CDS-F-serratus_M_contig733:194227..1943151622932224.609144-CDS-F-serratus_M_contig733:194227..194315Fucus serratus maleCDSF-serratus_M_contig733 194228..194315 +
1690964206.4742727-CDS-F-serratus_M_contig733:194227..1943151690964206.4742727-CDS-F-serratus_M_contig733:194227..194315Fucus serratus maleCDSF-serratus_M_contig733 194228..194315 +
1622932224.6291943-CDS-F-serratus_M_contig733:194893..1950431622932224.6291943-CDS-F-serratus_M_contig733:194893..195043Fucus serratus maleCDSF-serratus_M_contig733 194894..195043 +
1690964206.4842238-CDS-F-serratus_M_contig733:194893..1950431690964206.4842238-CDS-F-serratus_M_contig733:194893..195043Fucus serratus maleCDSF-serratus_M_contig733 194894..195043 +
1622932224.6457436-CDS-F-serratus_M_contig733:197522..1975851622932224.6457436-CDS-F-serratus_M_contig733:197522..197585Fucus serratus maleCDSF-serratus_M_contig733 197523..197585 +
1690964206.4986906-CDS-F-serratus_M_contig733:197522..1975851690964206.4986906-CDS-F-serratus_M_contig733:197522..197585Fucus serratus maleCDSF-serratus_M_contig733 197523..197585 +
1622932224.6584208-CDS-F-serratus_M_contig733:198267..1984361622932224.6584208-CDS-F-serratus_M_contig733:198267..198436Fucus serratus maleCDSF-serratus_M_contig733 198268..198436 +
1690964206.507262-CDS-F-serratus_M_contig733:198267..1984361690964206.507262-CDS-F-serratus_M_contig733:198267..198436Fucus serratus maleCDSF-serratus_M_contig733 198268..198436 +
1622932224.676419-CDS-F-serratus_M_contig733:198779..1989971622932224.676419-CDS-F-serratus_M_contig733:198779..198997Fucus serratus maleCDSF-serratus_M_contig733 198780..198997 +
1690964206.518218-CDS-F-serratus_M_contig733:198779..1989971690964206.518218-CDS-F-serratus_M_contig733:198779..198997Fucus serratus maleCDSF-serratus_M_contig733 198780..198997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig733.18553.1

>prot_F-serratus_M_contig733.18553.1 ID=prot_F-serratus_M_contig733.18553.1|Name=mRNA_F-serratus_M_contig733.18553.1|organism=Fucus serratus male|type=polypeptide|length=289bp
MKVAAKVPIVVHDPLGELRAEAEKHAQAWMGLDHVLRPIGFLAAYDTTGT
PAVLLSEIAMPLDSFLSHAGPLSSRHFRWIKAIARVIFQLLQFIVSADAI
NLLHRDIKTKNMFVVQTHSLDSARLAVGDFGAAQRGEETEGGNVVYRTGV
YTRDHTSPRMASALRSEITADGAPCGALPLSRQLCFYNDLFGWARIAFPA
LADRPPPDMLFAPTEADYARVPDLGFGDVLDAVRHLLCFALDLMTPGKID
EKADAEYIHALEWYHTLPDVLASGAEGGHQRHVRKTHA*
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mRNA from alignment at F-serratus_M_contig733:193021..199329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig733.18553.1 ID=mRNA_F-serratus_M_contig733.18553.1|Name=mRNA_F-serratus_M_contig733.18553.1|organism=Fucus serratus male|type=mRNA|length=6309bp|location=Sequence derived from alignment at F-serratus_M_contig733:193021..199329+ (Fucus serratus male)
ATCGGACGAAGCGCATGAAGAACGTAGAACGTTCACGACGAGCTTTCTAT TTCGCAATTCCTTTAAATACTACCACTTGTGTATGCAGTTTATTAAGCTA TACCCGCCCAAGTTGACCACGCAACATCGTTTCCCCTGTTATTGTTGATG TACCTATCTCGTTGCTGTAAAATATGAAGGTGGCCGCTAAGGTCCCCATA GTCGTACATGACCCTCTAGGCGAGCTTCGCGCTGAGGCTGAGAAGCATGC GCAAGCCTGGATGGGGCTAGACCACGTGCTTCGACCCATCGGATTCTTGG CGGCGTACGACACGACAGGCACCCCGGCAGTGCTCCTGTCGGAAATAGCC ATGTGAGTCCCAACCAAAAATACTTCAACATCTTCATCCCATCAGCATTA TTTTGTCCGTTCCGTGCTCCAACGGCAGCGAGGGGCGGGCGGTCAACCTG AGAGAGCGACGGCACTCCCGTCTAGGAGATGGGAGGACCGAGAAACTCCA GGCACTAGGTAACCCTGGCTCTGCGCCCTCTCGTCCGTTATGTTCCCCCG TCGCCTGCGGCAATATGTAGAGTAATGTACCCCTCTTCGTTGCCTGGTTT GTTCGGCGGATTTAATAGAGTTCGAATAAACCTCGGCGATGACGCATGAC GACCTCTCGAGCTTGTCCTCCCTACATATAATTTTGAGTACAAACAGGAG GATCCCCCTATGGTCTTCTACGGAGAACCAACGAAGTGGCAAAGAGGTTA CGCAGGCAAGCGCATCTCGAGTGTCGACACCTTACTCTCACCTAGTCGCC ATGGCGTCCGTTTTTCGTACCATACCTCCAGACATTACCCCTATCGTTAC CCTCACACTCATCGCACCGTACCAGAAAGTAGGTTGCTTGAGATCCTTAT AACCCATAGTAAAGTAAGAGTCATGTCCTGCTCTGCCAACGTCAGCCAAG CGTCGCAAAGACCGGTCACGAAGCTTGTCTCAGAACGACGTTTCCTTCCA CCTCCGTCTCACCGATCATATATAAACACGTCGCAAGAGAGTGCATGTAG GCAGCTTTTCTACCTACCCATCGTATTTGTAAATATTCCGTCGACAAACG CGTCTCGCCACAACGTTGCTACTCGCATTGCTCTGCCGGTGCTGTGCAAA CGTTTCTTTCTCGCAACGTTTCTCAAACGTTTTTTACCGGTATGTCGTGT CCCGCAGGCCCCTTGATTCGTTTCTCTCCCATGCGGGGCCACTCTCCAGC CGCCATTTTCGATGGATCAAGGCGATCGCGCGCGTTATCTTCCAGGCGAG CTCAAGCGCGTGATAGCAGAGACTCCGCGCTCAAAACCACAGGCAGTATG TAGCTGGAAACTTCCCCCCTCTTGTTAATAATAGTATATTTTGTTTAGTA CAAACCATCTAGTGTAGTATGTTGAAAGGTATGTCCTGGCCCCTCGATAT GCGCAGGGGATGCTTTTGATGTGTTTCATGCCAACTTACGTCACATTGCG TAAGCCTGACCCGTGCCCTATAGCCCCTTGCTCGGGGCTCCTACCCTCGA ATCAGTAGCAGACGTCCGCGTGGTACGCAGAGGGAAACGCATTCCTTTCT TCCTCTACTGCATGATCGTTCGGCAGCCCTGACGGGTATTGCAATCTTGG ATCAAGATCACCGCTGAACGGTTTTTTACCTTGTCGCACTGCGCTGCTTT CCGTGATCCGCATTCCCGTCCCGAAACGTAAGGCTCGACTCCTCTCTTCC TAACAGAAACATATTCTCGACAGTTCTCAAATAAGACTTGTGTTCTCGCA ACCTGCTACCCCTCTTGTTCCTGTCACTTGGGTCTGTCGCACTCGGGTTA ATACCCTCTCCTCTGTTGCAAAGCTGTTGCAGTTCATTGTGTCCGCGGAT GCCATCAACCTCCTGCATAGGGACATCAAGACGAAGAATATGTTCGTGGT GCAAACCCACAGTCTAGACTCGGCGAGACTGGCGGTGGGGGACTTTGGCG CCGCTCAGCGAGGCGAGGAGACGGTGAGGCGCCGGGGGTAGCGGGCTGTA GCCATGAAGCCTTTTTCGCCTCGCGTGCTGCGTCAAGCTCATAAACCTTT CAAGACGTGTTCTGTTGGTTCTATTTCGGTTTGCTCGAATAGCTGAATAA AAAAAGAACCACGCATCACCTGAGGTCGAGCATGCCCTTTCGAACGCCAT TGCATCAAAGCCGACCAGGACGCGAAAGCACACCATGCAGGTGGCAGCGC TGTTCGCGCTTGTAGACGATGTAGACGATGCCCGCGGTTGTGGTGTCGAG TTTCGTCGTTAGCGTGACACAAACCTACCGTGCACCCTTTCTTTTACGAA TAAGGCGATCGACTCATCAAGCTCTTTTGTGGTATAATCCGTAGTTTTAT CGACCTTTTTGTCACTTCTTACTATTAATAGAGCGTACTAATGGGGCAAA TCAACGTGAAAAAAAAGGACAAAAACCAGTGCTCTGCGAGCGTTAACGTG GTCCCCTTTCCCCTATAGGAATATATTTGTATTTATTTTCGCTTTTTTTC TTGTTCCCGTTCGTGGAGGGTATATTATTAGTAAGAGCACATAAAAATCG ATACCTGCGCTCCCGATTGGCCAAGAACGATCCAGAAAAATGCCAACACC TCTACCACCCCTCCGGAGTTGACGCCTACAGGAAAAACAGGTTGATCGGT ATATGAAAGCCGTGAATACGGGCGTTTAGCCTCCAAATGCCTATTTGGTA TCTACAATTTGGGATGAAGGGAATCTACAGAAATATACGGCAAGTCTTAC AAACGTCAAGATAACAGTCAAGCATCTTTATCCCCAGGTAGTTTTGGGCT TCGAAGATCATGTACCTTGGTTCGGGGCGGCCGGTGCAAGGGTTGCGCAA ACCCGGCAGTCCTGCCACAAAAGGCCCAAAAAAGGCGCCTGCTTATAACT AGTCAACATTTGTGTTAGTCGACACAGCATTATGGAGGTCGTGCTCTTCG GGAGGCTTTGGGAAGTATGATTCAAAATTCCGCGGTCTCGGGGGCGACCC TAGGCTCAAAAGCGGAGGATACCTGCTCGATCGACGTTGCACCACGCACA CCGCCGAATCACTCACACAAGAAACAATGTGTACACGAGAGAAATTTCTA ATTCCTCTTCTTCAACGGAATCGGCGTTGCTTATCGTGGCTTATGCATAT ATGCACACGTGCCTGAGATTTCAGCCTCCTGCATTGAGCCGGCTCGAAAA TCATGGGGTACAGGAGGTGCTCTTAAGGTTTTGACCGCGACTCCAAAGGA TATAACAAGGAACGTTCCTGGTCTCGAAAACGCAGTCTTGGGAGCTGTGT CCCACGATCTACAACCACCTTAGGCCGATAGCCCTAGATCATAGGATCGT AAACATGCCTTGCGGAACTGCCAGGGCGCCGTGGTTGCTCCGTTGTCCAA AGTTCCCCAAGAGGGCTCTCCGCGTTTTTTTCCTGTATCCTCTAATAAAG CTCAATTTGGCCTCTCACCCATTAGCTTGGAACTACAGTCGAGTGACGGT TTCATCAATATTTTGTGGCCAAAGTATATATCTTTGGCCATGTGTGTGGG GCCCCATTAAAGATTGATAACACAAATACTGATCGTACCTGTGTGACGGA ACACCGGAGTACGGGAGTTGGCTTCGATATATGTTTTACATATGGGACTT GTTTAATACTCCCCTTTATCTAGAGAGGATAGCCCCACTATGTTCAGTGT TGTATAGTACGTACAAAGAGTATGTATTCGGTAGCCCGTGTGTACGGAAG GTTTATGTGTTAGAAGCTCGTACGCGATGTAACACCAGCGTTATGATAAT CACATAATCTCTGTTTGGGATCATCTCAATAAGCTCATTTCTCCTGAAAC AACCACACCCATAGCACCGCCCCTCGTGTAAGACCTGTCAGCGCTGCAGA CTCCCGTGGGATCCCCAATCACACATAGCGGTAGGGAGCGCTATCATGCT GAGCGTAAAAGAGCAACGATCGCTTCGCGAGGTACCACGAAACGCTTGCA TGCTAAGGCTACGATAAGGGGCTGTTGTATTGTGAGCCGAAAAATTGGGG AACAGATCTAGATGACTGAGTAGCTCAGGGTCCAGCTTTGGAAGCAGACG ATAAAAAAATCTTGAGTTTGAATCCGGCCGAGAGTGCTGTTTGTCAAGGG GGCATGTCATTGGCGAGGGGAATGCCCCGGATATCAATGTCGCTACCGAG CAAGGCCTGAGAGCCTGAGACATACATTTTGTTAGTTTGCGGCTAAACTA TTGGACTAATCCGTGACGTCGCTCAGTAGTCCAATAATTTAGCCGCCAAC AAACCCTCTGAACCCATTTGATACTCCGAGATGGGAATTCTTTCTAGTAA TGTGCGAGAGGTAAAAATACGGCCGCCCTCCCACGAAACCGACCGTAACA AGGGATAGCTACAAATATTTTCGCCTCGTATCTCTCTGATGCCTTGTCAC AGGAGGGAGGAAACGTCGTCTACCGCACCGGCGTCTACACGAGGGATCAC ACGAGCCCGCGCATGGTGAGGTTTGCCGCAAAAAAGCGACTTGGCACTTC AAGGGAGCCCGTTATAAACAGAACGAGTAGAGCGGGGATTGATCTACCGA TCGATCAATGCTTATAAGTACGGTTTCAGCTTGTCGGACGACGATTGCAC GTGCCGCTGTCTCTTTACATCTATTTATGAAAGCTGCAATACCGCCCGCC TAATCAACAGATACAAAATGCCTGCTGTATTCGTTTACCGTTTGGTATCC CTCGCTGAACCAACAAGCCATGCGGGCCGGCGCTGAGTAGTTTCTGGCTC ATGGGGCTTACTACACTGCACACATGCTTGATTCCACTGCAAGAGGAGAG TTGTTTCTTGCATTAAAGGTGCAGCACATCGTGTCGGATGGCGACCCGAG CTGTGAAGTAGCCGATGTGCAGTCAAAAGCGCTCGCACAATGTTTGACAC TTGAAGGCAGACCGTTTCGAGGGATGAGGTCTCCACGCCCGTTTTGAAAG GCGTACTACAAAAAGATTTGTAGCTACAAAGTGAGCGTGTCGGAGCTTGA ACAAACTTGTTGTCTTCTGTCCACCGTTTCAAGTCATTTTAAAACAAGTA TAAATACATTTCTTCTGGACAGCCATTATGCCCCCCCCAAGCGACGACCT TCACTGTAGCAGATACGTTTTTTTTTCTGGTGCCCACGTTTCCACAGGCT TCGGCACTTCGCAGTGAAATTACAGCGGACGGCGCGCCATGCGGAGCCTT GCCGCTCAGTCGGCAGCTTTGCTTCTATAATGATCTGTTTGGGTGGGCTC GAATCGCCTTCCCCGCTCTGGCAGATCGCCCCCCCCCAGACATGCTGTTC GCCCCGACTGAAGCAGGTACAAACAAATAGTACAACAAGTAAGTTGTAAG TTTAGATTCGTTGAGTCCGTTTACGATCATACCACAAAGCTCTACTGATA CCTGTGTGCGAAATTTGAAGAGAAAATGTTATCGTACACGAATAATACCA GGTACTGTACTGCAGTGCGTGACCATTATACTTATCCTTCAAAATATCAA TTATTACCTTTTCGTACCCACGAGTACGCGATACTTCTGTTAGAGCTGTC TGTGCGCAAACGGACGGGTGGGCACACCTGATTTTATGAGAAGCTTACAA GAGAGAACGGCCCTTACCGATTCGCTTGATCACTGCGCCTGACGCTGGCG ATCGTTTAGACTATGCAAGGGTTCCTGATCTGGGCTTCGGCGACGTCTTG GATGCTGTGCGCCACCTTCTGTGCTTTGCGCTTGACCTCATGACGCCAGG GAAAATTGATGAGAAAGCCGACGCCGAGTACATCCATGCATTGGAATGGT ACCATACGCTGCCCGATGTTCTAGCTAGTGGAGCTGAGGGCGGCCATCAG CGGCACGTGAGAAAGACACACGCGTAGTGTACAGAAGCGTAGCGAAGGAT GTCGGATCGTTGTCGTTACGGGATTCAGCCGTGAAGGGCCTTTGGCGCCT CGTGAGGTGGCCAGGCATTCGATGGAGCTAACAGTGGCTTGGGTGGAGGA TATATGTTGCATATATTTTTCCGATACGAGTACGACCTGGAGCCTATGTC CAGCACGAATGAGCAAGCCCTCCAATTCTATAAAATAATGGGACACTTCT CTGCGCGTAGAGAAGTCATGATTTAAGAGATGTTTTTAACCCATTCCTAT CCGTAGCGCCCGATGAGCGTACCAGAAACCCTGGAAAGCTGGAATACCTG AAAGGCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig733:193021..199329+

>mRNA_F-serratus_M_contig733.18553.1 ID=mRNA_F-serratus_M_contig733.18553.1|Name=mRNA_F-serratus_M_contig733.18553.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig733:193021..199329+ (Fucus serratus male)
ATGAAGGTGGCCGCTAAGGTCCCCATAGTCGTACATGACCCTCTAGGCGA
GCTTCGCGCTGAGGCTGAGAAGCATGCGCAAGCCTGGATGGGGCTAGACC
ACGTGCTTCGACCCATCGGATTCTTGGCGGCGTACGACACGACAGGCACC
CCGGCAGTGCTCCTGTCGGAAATAGCCATATGAAGGTGGCCGCTAAGGTC
CCCATAGTCGTACATGACCCTCTAGGCGAGCTTCGCGCTGAGGCTGAGAA
GCATGCGCAAGCCTGGATGGGGCTAGACCACGTGCTTCGACCCATCGGAT
TCTTGGCGGCGTACGACACGACAGGCACCCCGGCAGTGCTCCTGTCGGAA
ATAGCCATGCCCCTTGATTCGTTTCTCTCCCATGCGGGGCCACTCTCCAG
CCGCCATTTTCGATGGATCAAGGCGATCGCGCGCGTTATCTTCCAGGCCC
CTTGATTCGTTTCTCTCCCATGCGGGGCCACTCTCCAGCCGCCATTTTCG
ATGGATCAAGGCGATCGCGCGCGTTATCTTCCAGCTGTTGCAGTTCATTG
TGTCCGCGGATGCCATCAACCTCCTGCATAGGGACATCAAGACGAAGAAT
ATGTTCGTGGTGCAAACCCACAGTCTAGACTCGGCGAGACTGGCGGTGGG
GGACTTTGGCGCCGCTCAGCGAGGCGAGGAGACGCTGTTGCAGTTCATTG
TGTCCGCGGATGCCATCAACCTCCTGCATAGGGACATCAAGACGAAGAAT
ATGTTCGTGGTGCAAACCCACAGTCTAGACTCGGCGAGACTGGCGGTGGG
GGACTTTGGCGCCGCTCAGCGAGGCGAGGAGACGGAGGGAGGAAACGTCG
TCTACCGCACCGGCGTCTACACGAGGGATCACACGAGCCCGCGCATGGAG
GGAGGAAACGTCGTCTACCGCACCGGCGTCTACACGAGGGATCACACGAG
CCCGCGCATGGCTTCGGCACTTCGCAGTGAAATTACAGCGGACGGCGCGC
CATGCGGAGCCTTGCCGCTCAGTCGGCAGCTTTGCTTCTATAATGATCTG
TTTGGGTGGGCTCGAATCGCCTTCCCCGCTCTGGCAGATCGCCCCCCCCC
AGACATGCTGTTCGCCCCGACTGAAGCAGGCTTCGGCACTTCGCAGTGAA
ATTACAGCGGACGGCGCGCCATGCGGAGCCTTGCCGCTCAGTCGGCAGCT
TTGCTTCTATAATGATCTGTTTGGGTGGGCTCGAATCGCCTTCCCCGCTC
TGGCAGATCGCCCCCCCCCAGACATGCTGTTCGCCCCGACTGAAGCAGAC
TATGCAAGGGTTCCTGATCTGGGCTTCGGCGACGTCTTGGATGCTGTGCG
CCACCTTCTGTGCTTTGCGCTTGACCTCATGACGCCAGGGAAAATTGATG
AGAAAGCCGACGCCGAGTACATCCATGCATTGGAATGGTACCATACGCTG
CCCGATGTTCTAGCTAGTGGAGCTGAGGGCGGCCATCAGCGGCACGTGAG
AAAGACACACGCGTAGACTATGCAAGGGTTCCTGATCTGGGCTTCGGCGA
CGTCTTGGATGCTGTGCGCCACCTTCTGTGCTTTGCGCTTGACCTCATGA
CGCCAGGGAAAATTGATGAGAAAGCCGACGCCGAGTACATCCATGCATTG
GAATGGTACCATACGCTGCCCGATGTTCTAGCTAGTGGAGCTGAGGGCGG
CCATCAGCGGCACGTGAGAAAGACACACGCGTAG
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