mRNA_F-serratus_M_contig7305.18539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7305.18539.1
Unique NamemRNA_F-serratus_M_contig7305.18539.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7305.18539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7305contigF-serratus_M_contig7305:7093..7879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932222.7022526-CDS-F-serratus_M_contig7305:7094..71751622932222.7022526-CDS-F-serratus_M_contig7305:7094..7175Fucus serratus maleCDSF-serratus_M_contig7305 7095..7175 -
1690964205.6051126-CDS-F-serratus_M_contig7305:7094..71751690964205.6051126-CDS-F-serratus_M_contig7305:7094..7175Fucus serratus maleCDSF-serratus_M_contig7305 7095..7175 -
1622932222.7339652-CDS-F-serratus_M_contig7305:7645..78791622932222.7339652-CDS-F-serratus_M_contig7305:7645..7879Fucus serratus maleCDSF-serratus_M_contig7305 7646..7879 -
1690964205.6152933-CDS-F-serratus_M_contig7305:7645..78791690964205.6152933-CDS-F-serratus_M_contig7305:7645..7879Fucus serratus maleCDSF-serratus_M_contig7305 7646..7879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7305.18539.1prot_F-serratus_M_contig7305.18539.1Fucus serratus malepolypeptideF-serratus_M_contig7305 7095..7879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7305.18539.1

>prot_F-serratus_M_contig7305.18539.1 ID=prot_F-serratus_M_contig7305.18539.1|Name=mRNA_F-serratus_M_contig7305.18539.1|organism=Fucus serratus male|type=polypeptide|length=105bp
GRWRPLRTHWSVSTSLARVKREKVLKIQHGGESGGTGRRYRKWSSKRGKA
VLVGYSSPSQNACRQVGVTLSKLRAVLRAQTCVQAAGTRTAENSSPHARP
TSTSS
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mRNA from alignment at F-serratus_M_contig7305:7093..7879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7305.18539.1 ID=mRNA_F-serratus_M_contig7305.18539.1|Name=mRNA_F-serratus_M_contig7305.18539.1|organism=Fucus serratus male|type=mRNA|length=787bp|location=Sequence derived from alignment at F-serratus_M_contig7305:7093..7879- (Fucus serratus male)
GGGAGGTGGAGGCCGCTCCGGACACATTGGAGCGTTTCTACGTCTCTGGC
CAGGGTCAAGCGGGAGAAGGTTCTGAAGATTCAGCATGGAGGCGAGTCCG
GTGGCACCGGGAGGCGTTATAGGAAGTGGAGCAGTAAACGTGGCAAGGCA
GTGTTGGTTGGGTACAGTAGCCCAAGTCAGAATGCCTGCCGACAGGTCGG
TGTAACGCTGTCGAAGCTACGGGCGGTACTCCGGGTGAGTGTCGATTGTG
CAGCCTAAGTCAAGATACCCGCCGGTAGGCTGGTGCAGCGCTGCTGAAGC
AACAGGCAGTTCCGTGGATGCTGCTATTGCGGTCGTGACTGCGGTAGCGG
TGGTAGAAGACTGGGCGGCGCAGGATGCCACCGTTTCGAGACCGTTTTCC
GTCTACGGTATGGGTTGTTCTGTTGGATAGCATTTAGATAATTGTTTCGG
AAGCGGGCGAGCAAACTACCTGACCGTCGGGTTTCCTTCGAGATTCAAGC
TCCCCCTCACAAGACGATTCGCGCCTCGACGGAGTGCACAAACCTAAGTC
GCGAAGCGCCAGTCCCCATCGTTCTTGAATGTTGAGATTTACTTACTTTT
ACTGGGCATCTCTTTTTCAGCCTCGTTTTCCCTCGCACGGCTTCCATTCC
TCATTCCCCACCCACCACACGCTTACGATTTTGCTCTTGAAACCCCTCCC
TCAGGCACAGACGTGCGTGCAGGCGGCAGGCACGAGGACAGCAGAAAACT
CATCCCCGCACGCACGTCCCACATCCACATCATCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7305:7093..7879-

>mRNA_F-serratus_M_contig7305.18539.1 ID=mRNA_F-serratus_M_contig7305.18539.1|Name=mRNA_F-serratus_M_contig7305.18539.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig7305:7093..7879- (Fucus serratus male)
GGGAGGTGGAGGCCGCTCCGGACACATTGGAGCGTTTCTACGTCTCTGGC
CAGGGTCAAGCGGGAGAAGGTTCTGAAGATTCAGCATGGAGGCGAGTCCG
GTGGCACCGGGAGGCGTTATAGGAAGTGGAGCAGTAAACGTGGCAAGGCA
GTGTTGGTTGGGTACAGTAGCCCAAGTCAGAATGCCTGCCGACAGGTCGG
TGTAACGCTGTCGAAGCTACGGGCGGTACTCCGGGGGAGGTGGAGGCCGC
TCCGGACACATTGGAGCGTTTCTACGTCTCTGGCCAGGGTCAAGCGGGAG
AAGGTTCTGAAGATTCAGCATGGAGGCGAGTCCGGTGGCACCGGGAGGCG
TTATAGGAAGTGGAGCAGTAAACGTGGCAAGGCAGTGTTGGTTGGGTACA
GTAGCCCAAGTCAGAATGCCTGCCGACAGGTCGGTGTAACGCTGTCGAAG
CTACGGGCGGTACTCCGGGCACAGACGTGCGTGCAGGCGGCAGGCACGAG
GACAGCAGAAAACTCATCCCCGCACGCACGTCCCACATCCACATCATCGG
CACAGACGTGCGTGCAGGCGGCAGGCACGAGGACAGCAGAAAACTCATCC
CCGCACGCACGTCCCACATCCACATCATCG
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