mRNA_F-serratus_M_contig728.18506.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig728.18506.1
Unique NamemRNA_F-serratus_M_contig728.18506.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.270e-17
Identity = 38/67 (56.72%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIL 201
            LREL   V +V A H+ A+AR+A+A+ A+GL RD++LA+GA+VML++NL+ +VGLVNGIRG+VV+++
Sbjct:   67 LRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELV 133
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BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.670e-16
Identity = 38/67 (56.72%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIL 201
            LREL   V +V A H+ A+AR+A+A+ A+GL RD++LA+GA+VML++NL+ +VGLVNGIRG+VV+++
Sbjct: 1372 LRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELV 1438
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BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT)

HSP 1 Score: 69.7 bits (169), Expect = 1.020e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   +  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct:   37 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 104
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A7D9J472_PARCT (ATP-dependent DNA helicase (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J472_PARCT)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   + ++ A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct:  736 LTKLEHPIARINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 803
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A7D9LM67_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LM67_PARCT)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   +  + A HSSA A+K S++   GL  DVFLA+GARVMLT NLWS VGL NG  G VVD ++
Sbjct:  903 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPDVFLAKGARVMLTMNLWSSVGLCNGATGTVVDSIY 970
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT)

HSP 1 Score: 69.7 bits (169), Expect = 1.330e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   +  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct:   63 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 130
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6S7GSE2_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GSE2_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.910e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   V  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct:  479 LTKLEHPVAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 546
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6S7I8Z0_PARCT (ATP-dependent DNA helicase (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I8Z0_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   V  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct: 1360 LTKLEHPVAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 1427
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A7D9HMH4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HMH4_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   V  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct: 1666 LTKLEHPVAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 1733
[Close]
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Match: A0A6S7HWZ8_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HWZ8_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 2.070e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDILW 204
            L +L   V  + A HSSA A+K S++++ GL   VFLA+GARVMLT NLWS VGL NG  G VVDI++
Sbjct:  136 LTKLEHPVAHINARHSSALAKKISSDMS-GLESVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIY 202
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig728.18506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE5.270e-1756.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE1.670e-1656.72ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6S7LS63_PARCT1.020e-1254.41Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A7D9J472_PARCT1.030e-1254.41ATP-dependent DNA helicase (Fragment) n=1 Tax=Para... [more]
A0A7D9LM67_PARCT1.030e-1254.41ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
A0A7D9HJE5_PARCT1.330e-1254.41Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6S7GSE2_PARCT1.910e-1255.88ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7I8Z0_PARCT1.940e-1255.88ATP-dependent DNA helicase (Fragment) n=3 Tax=Para... [more]
A0A7D9HMH4_PARCT1.940e-1255.88ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7HWZ8_PARCT2.070e-1255.88Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig728contigF-serratus_M_contig728:159929..160132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.1
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog28564.XP_002484617.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helitron helicase-like domain at N-terminus
EggNOG OGs39JTG@33154,3Q45F@4751,3RMAN@4890,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.4626396-CDS-F-serratus_M_contig728:159928..1601321622932215.4626396-CDS-F-serratus_M_contig728:159928..160132Fucus serratus maleCDSF-serratus_M_contig728 159929..160132 +
1690964202.4544795-CDS-F-serratus_M_contig728:159928..1601321690964202.4544795-CDS-F-serratus_M_contig728:159928..160132Fucus serratus maleCDSF-serratus_M_contig728 159929..160132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig728.18506.1prot_F-serratus_M_contig728.18506.1Fucus serratus malepolypeptideF-serratus_M_contig728 159929..160132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig728.18506.1

>prot_F-serratus_M_contig728.18506.1 ID=prot_F-serratus_M_contig728.18506.1|Name=mRNA_F-serratus_M_contig728.18506.1|organism=Fucus serratus male|type=polypeptide|length=68bp
LRELGTSVLKVEANHSSASARKASAELAQGLHRDVFLARGARVMLTRNLW
SEVGLVNGIRGDVVDILW
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mRNA from alignment at F-serratus_M_contig728:159929..160132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig728.18506.1 ID=mRNA_F-serratus_M_contig728.18506.1|Name=mRNA_F-serratus_M_contig728.18506.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig728:159929..160132+ (Fucus serratus male)
CTAAGAGAGCTCGGTACGTCCGTGCTTAAGGTGGAGGCGAATCATTCTTC
AGCGTCCGCTAGAAAAGCTAGCGCCGAGTTAGCCCAGGGGCTACATCGTG
ATGTCTTCCTTGCACGAGGGGCTAGGGTCATGCTCACTCGTAACCTATGG
TCCGAGGTGGGACTCGTCAACGGCATTAGAGGGGACGTTGTCGACATACT
GTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig728:159929..160132+

>mRNA_F-serratus_M_contig728.18506.1 ID=mRNA_F-serratus_M_contig728.18506.1|Name=mRNA_F-serratus_M_contig728.18506.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig728:159929..160132+ (Fucus serratus male)
CTAAGAGAGCTCGGTACGTCCGTGCTTAAGGTGGAGGCGAATCATTCTTC
AGCGTCCGCTAGAAAAGCTAGCGCCGAGTTAGCCCAGGGGCTACATCGTG
ATGTCTTCCTTGCACGAGGGGCTAGGGTCATGCTCACTCGTAACCTATGG
TCCGAGGTGGGACTCGTCAACGGCATTAGAGGGGACGTTGTCGACATACT
GTGGCTAAGAGAGCTCGGTACGTCCGTGCTTAAGGTGGAGGCGAATCATT
CTTCAGCGTCCGCTAGAAAAGCTAGCGCCGAGTTAGCCCAGGGGCTACAT
CGTGATGTCTTCCTTGCACGAGGGGCTAGGGTCATGCTCACTCGTAACCT
ATGGTCCGAGGTGGGACTCGTCAACGGCATTAGAGGGGACGTTGTCGACA
TACTGTGG
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