mRNA_F-serratus_M_contig728.18508.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig728.18508.1
Unique NamemRNA_F-serratus_M_contig728.18508.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig728.18508.1 vs. uniprot
Match: A0A6H5KHJ8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.500e-11
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   76 DANPRTGVRMVAKEDYNVIWAYGRDTQVSGSNGTSLLRFAGDNKLALVNTCFSVFKGCTCRTFNGTRPADWK-RIDYIITREPHRKFVRNVTVPLQPRAGSDHNIV 390
            DAN  T  R     D   + AYGRD  +  +NG  LL  A DN+L+L NT F   KG    TF  +     K R+++I+TR+  R+FVRNV+V       SDHN+V
Sbjct:    2 DANAPTCRRRGGCCDAKFMGAYGRD--IMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLEFILTRQTERRFVRNVSVKRVDFKDSDHNLV 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig728.18508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHJ8_9PHAE3.500e-1141.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig728contigF-serratus_M_contig728:351581..351970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.3651257-UTR-F-serratus_M_contig728:351580..3515861622932215.3651257-UTR-F-serratus_M_contig728:351580..351586Fucus serratus maleUTRF-serratus_M_contig728 351581..351586 +
1690964202.4259067-UTR-F-serratus_M_contig728:351580..3515861690964202.4259067-UTR-F-serratus_M_contig728:351580..351586Fucus serratus maleUTRF-serratus_M_contig728 351581..351586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.3827953-CDS-F-serratus_M_contig728:351586..3519701622932215.3827953-CDS-F-serratus_M_contig728:351586..351970Fucus serratus maleCDSF-serratus_M_contig728 351587..351970 +
1690964202.4441314-CDS-F-serratus_M_contig728:351586..3519701690964202.4441314-CDS-F-serratus_M_contig728:351586..351970Fucus serratus maleCDSF-serratus_M_contig728 351587..351970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig728.18508.1prot_F-serratus_M_contig728.18508.1Fucus serratus malepolypeptideF-serratus_M_contig728 351587..351970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig728.18508.1

>prot_F-serratus_M_contig728.18508.1 ID=prot_F-serratus_M_contig728.18508.1|Name=mRNA_F-serratus_M_contig728.18508.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MFWTVWESAVSRVHSSHYRFVLRDANPRTGVRMVAKEDYNVIWAYGRDTQ
VSGSNGTSLLRFAGDNKLALVNTCFSVFKGCTCRTFNGTRPADWKRIDYI
ITREPHRKFVRNVTVPLQPRAGSDHNIV
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mRNA from alignment at F-serratus_M_contig728:351581..351970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig728.18508.1 ID=mRNA_F-serratus_M_contig728.18508.1|Name=mRNA_F-serratus_M_contig728.18508.1|organism=Fucus serratus male|type=mRNA|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig728:351581..351970+ (Fucus serratus male)
AAGGATATGTTTTGGACGGTTTGGGAAAGTGCTGTTAGTCGAGTGCACAG
CAGCCACTATCGGTTTGTTTTAAGAGACGCTAACCCTAGAACTGGTGTAC
GGATGGTAGCGAAGGAGGATTATAATGTAATTTGGGCATATGGCAGGGAC
ACCCAGGTGAGTGGCAGCAACGGAACCTCGCTTTTGCGGTTTGCGGGTGA
CAACAAGCTGGCCCTCGTCAACACGTGCTTCTCCGTCTTCAAGGGATGCA
CGTGTCGTACATTCAACGGAACCCGGCCCGCGGATTGGAAACGTATTGAC
TACATCATCACGCGAGAACCACACCGCAAGTTTGTCCGAAATGTCACTGT
TCCTTTGCAGCCGCGAGCGGGTTCCGACCACAACATCGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig728:351581..351970+

>mRNA_F-serratus_M_contig728.18508.1 ID=mRNA_F-serratus_M_contig728.18508.1|Name=mRNA_F-serratus_M_contig728.18508.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig728:351581..351970+ (Fucus serratus male)
ATGTTTTGGACGGTTTGGGAAAGTGCTGTTAGTCGAGTGCACAGCAGCCA
CTATCGGTTTGTTTTAAGAGACGCTAACCCTAGAACTGGTGTACGGATGG
TAGCGAAGGAGGATTATAATGTAATTTGGGCATATGGCAGGGACACCCAG
GTGAGTGGCAGCAACGGAACCTCGCTTTTGCGGTTTGCGGGTGACAACAA
GCTGGCCCTCGTCAACACGTGCTTCTCCGTCTTCAAGGGATGCACGTGTC
GTACATTCAACGGAACCCGGCCCGCGGATTGGAAACGTATTGACTACATC
ATCACGCGAGAACCACACCGCAAGTTTGTCCGAAATGTCACTGTTCCTTT
GCAGCCGCGAGCGGGTTCCGACCACAACATCGTGATGTTTTGGACGGTTT
GGGAAAGTGCTGTTAGTCGAGTGCACAGCAGCCACTATCGGTTTGTTTTA
AGAGACGCTAACCCTAGAACTGGTGTACGGATGGTAGCGAAGGAGGATTA
TAATGTAATTTGGGCATATGGCAGGGACACCCAGGTGAGTGGCAGCAACG
GAACCTCGCTTTTGCGGTTTGCGGGTGACAACAAGCTGGCCCTCGTCAAC
ACGTGCTTCTCCGTCTTCAAGGGATGCACGTGTCGTACATTCAACGGAAC
CCGGCCCGCGGATTGGAAACGTATTGACTACATCATCACGCGAGAACCAC
ACCGCAAGTTTGTCCGAAATGTCACTGTTCCTTTGCAGCCGCGAGCGGGT
TCCGACCACAACATCGTG
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