mRNA_F-serratus_M_contig7272.18503.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7272.18503.1
Unique NamemRNA_F-serratus_M_contig7272.18503.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7272.18503.1 vs. uniprot
Match: D8LCF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF7_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 3.170e-81
Identity = 172/289 (59.52%), Postives = 194/289 (67.13%), Query Frame = 2 
Query:  458 PLAVMVEQGVTARLSRLAFDGSVAIAALITAGAAATP-----PVPPPEHASEAVRSPFVTACGLLNNILNSAGHLPWPQT--SAVLRRVAVRAGKKGELC-APR-ALSHPVLAHPETGECLVSLAEVAGLAGAARRAGGGARWRLLAGQATLVIMIVACS-----GLAPGDGLVDRR-SRW-GQEGEGRREDRSCSAPSVWESMAQAVDEALGSLSPAPGRGLIGT----RDEEEAPYEEGAIWQWCLECARAIEAETGGADENPYVAVGIMPWKVLRSLGEASADCRI 1264
            PLA MVE+GV ARL+RLA  G  AIAAL   G  +       P  PPE  SEAVRSP V+ACGLL NIL SAGHL WP+   +A          ++G     PR A SH VL HP  G+CL SLAEVAG AGAARRAGGGARWRLLA  ATLV+M VA +     GLAP  GL  RR  RW G+EG+ R      S+PSVWE MA+AVDEALGSLS  PGRGLIG      +EEEA YEEG+IWQWCLECAR IEA  GGA  N YV+ G++P +V+RSL EASAD RI
Sbjct:  818 PLAAMVEEGVAARLARLAASGPPAIAALXXLGRTSGXXXXGLPTSPPEQVSEAVRSPLVSACGLLTNILTSAGHLAWPEDRPAAXXXXXXXXXRRRGAGSHQPRGAPSHAVLGHPGMGQCLASLAEVAGAAGAARRAGGGARWRLLAAHATLVVMTVARAATPGNGLAPAAGLAGRRPQRWSGEEGDARGIGARGSSPSVWEGMARAVDEALGSLSATPGRGLIGGGRGGEEEEEASYEEGSIWQWCLECAREIEAAPGGAAGNAYVSCGVVPRRVIRSLKEASADGRI 1106
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BLAST of mRNA_F-serratus_M_contig7272.18503.1 vs. uniprot
Match: A0A6H5KY02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY02_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.730e-81
Identity = 167/299 (55.85%), Postives = 188/299 (62.88%), Query Frame = 2 
Query:  458 PLAVMVEQGVTARLSRLAFDGSVAIAALITAGAAATP--------PVPPPEHASEAVRSPFVTACGLLNNILNSAGHLPWPQ--------TSAVLRRVAVRAGKKGELCAPRALSHPVLAHPETGECLVSLAEVAGLAGAARRAGGGARWRLLAGQATLVIMIVACS-----GLAPGDGLVDRRSR-W-GQEGEGRREDRSCSAPSVWESMAQAVDEALGSLSPAPGRGLIG-------TRDEEEAPYEEGAIWQWCLECARAIEAETGGADENPYVAVGIMPWKVLRSLGEASADCRI 1264
            PLA MVE+GV ARL+RLA  G  AIAAL+  G  ++         P  PPE  SEAVRSP V+ACGLL NIL SAGHL WP+        + A  RR A R   +G   APR   HPVL HP  G+CL SLAEVAG     RRAGGGARWRLLA  ATLV+M VA +     GLAP  GL  RR R W G+EG+   +  S   PSVWE MA+AVDEALGSLS  PGRGLIG            EA YEEGAIWQWCLECAR IE   GG   N YV+ G++P ++L SL EASAD RI
Sbjct:   78 PLAAMVEEGVAARLARLAAAGLPAIAALLLLGRTSSSADDDGGELPTSPPEQVSEAVRSPLVSACGLLTNILTSAGHLAWPEDRPAAAGGSGAARRRGAGRQQPRG---APR---HPVLGHPGMGQCLASLAEVAGAXXXXRRAGGGARWRLLAAHATLVVMTVARAATPGNGLAPAAGLAGRRPRRWSGEEGDPPGDGAS---PSVWEGMARAVDEALGSLSATPGRGLIGGGRGGTGEXXXXEASYEEGAIWQWCLECAREIEVAPGGVTGNAYVSCGVVPRRLLSSLKEASADGRI 367
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BLAST of mRNA_F-serratus_M_contig7272.18503.1 vs. uniprot
Match: A0A6H5KXD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.270e-22
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 3 
Query:    3 TLTGLFGCVLDFLAEIRPWIVSDDLAASGSG----RSPSPSMLDLWTVQRVGLACSHALGVWVAEDPEGLPQRFVDTLPVMLALKADAEA 260
            TL GLFGCVLDFL+EIR W+++   +  G       S  PS++DLW + R+GL CS  LGVWVAEDPE LPQRF++ LPV+LAL A  EA
Sbjct:  652 TLVGLFGCVLDFLSEIRRWVLAVSHSTGGDADIGSASAGPSIVDLWALHRLGLECSRVLGVWVAEDPESLPQRFLEALPVLLALNAGEEA 741
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7272.18503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCF7_ECTSI3.170e-8159.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY02_9PHAE3.730e-8155.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXD7_9PHAE2.270e-2257.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7272contigF-serratus_M_contig7272:6270..8160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue3.3e-72
Seed eggNOG ortholog2880.D8LCF7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Neurochondrin
EggNOG OGs2EY0B@1,2SZK0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1267
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7272.18503.1prot_F-serratus_M_contig7272.18503.1Fucus serratus malepolypeptideF-serratus_M_contig7272 7363..8160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.0971634-UTR-F-serratus_M_contig7272:6269..65261622932215.0971634-UTR-F-serratus_M_contig7272:6269..6526Fucus serratus maleUTRF-serratus_M_contig7272 6270..6526 +
1690964202.330436-UTR-F-serratus_M_contig7272:6269..65261690964202.330436-UTR-F-serratus_M_contig7272:6269..6526Fucus serratus maleUTRF-serratus_M_contig7272 6270..6526 +
1622932215.1185608-UTR-F-serratus_M_contig7272:7150..73621622932215.1185608-UTR-F-serratus_M_contig7272:7150..7362Fucus serratus maleUTRF-serratus_M_contig7272 7151..7362 +
1690964202.3436434-UTR-F-serratus_M_contig7272:7150..73621690964202.3436434-UTR-F-serratus_M_contig7272:7150..7362Fucus serratus maleUTRF-serratus_M_contig7272 7151..7362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.136117-CDS-F-serratus_M_contig7272:7362..81601622932215.136117-CDS-F-serratus_M_contig7272:7362..8160Fucus serratus maleCDSF-serratus_M_contig7272 7363..8160 +
1690964202.3527453-CDS-F-serratus_M_contig7272:7362..81601690964202.3527453-CDS-F-serratus_M_contig7272:7362..8160Fucus serratus maleCDSF-serratus_M_contig7272 7363..8160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7272.18503.1

>prot_F-serratus_M_contig7272.18503.1 ID=prot_F-serratus_M_contig7272.18503.1|Name=mRNA_F-serratus_M_contig7272.18503.1|organism=Fucus serratus male|type=polypeptide|length=266bp
MVEQGVTARLSRLAFDGSVAIAALITAGAAATPPVPPPEHASEAVRSPFV
TACGLLNNILNSAGHLPWPQTSAVLRRVAVRAGKKGELCAPRALSHPVLA
HPETGECLVSLAEVAGLAGAARRAGGGARWRLLAGQATLVIMIVACSGLA
PGDGLVDRRSRWGQEGEGRREDRSCSAPSVWESMAQAVDEALGSLSPAPG
RGLIGTRDEEEAPYEEGAIWQWCLECARAIEAETGGADENPYVAVGIMPW
KVLRSLGEASADCRI*
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mRNA from alignment at F-serratus_M_contig7272:6270..8160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7272.18503.1 ID=mRNA_F-serratus_M_contig7272.18503.1|Name=mRNA_F-serratus_M_contig7272.18503.1|organism=Fucus serratus male|type=mRNA|length=1891bp|location=Sequence derived from alignment at F-serratus_M_contig7272:6270..8160+ (Fucus serratus male)
AGACGTTGACGGGATTGTTCGGCTGCGTGTTAGATTTTCTCGCGGAAATC
CGCCCCTGGATTGTCTCGGACGATCTCGCTGCGAGCGGATCAGGTCGCAG
TCCCTCTCCGTCCATGTTAGACCTGTGGACCGTGCAGAGGGTAGGTTTGG
CGTGCTCCCACGCGCTCGGGGTGTGGGTGGCGGAGGACCCGGAGGGTCTC
CCGCAGAGATTTGTAGACACTCTCCCTGTGATGCTGGCGCTGAAGGCCGA
CGCTGAGGTGAGAGCTGTGCTAGGGACGAGGGATTGCAGAAGCTGCGCAC
GCGACGTTTGTCGAAACTGGGGCAAGGCGGGCGAGAAAGTATCTCCTCAG
TTGTAATTTGCATGCACATGAATTCCGCTTTCAGCAATGGACTTGGATAT
ACAAGGAGTGGTAAGGTGTGTCGTTTACGCCCGACGGGATTCGATCCGCT
CAAACCCACACTGCAAGGAAAGATAGGGAAAAGGAGGTTAGGGCAGGCGG
GAATCTACATGTTGTCTAATCTCTGTTGGAACCGAAAGTCGTGGAAGGCG
TTGTAAATCAATGCTGGATACGGATGACGACCATGGATATAAGCGTATGT
GGCAGATACTGCTGCTAACGGAAAAACGTTACTAGTCATTGGTCGTACTA
CCTCAACCGGTTAGTTACGCAGTTTAAAAATACATAAACCAAGTTTGGTC
TGTACCAACAGTACGATTATTTCTCCTCTTCCCGTAAGCAGTATGTGCTA
CATTTGATTTCTCCACCTCCCTCGCCAATCTCAAAAACTGAACCGCTGAA
GTTTCTCTAGCACCGAAGTACCCACCCAGTCTTATTTTTTGTTTCAATGG
CGTCGTTCACGTGATTCCCACTCTCCACCAGGCCCCCGACTCCGACGACG
AAGAAAGTGAGGATGAAAGCGAGTGGGACGCCGTAGTTCCGACCATGGCG
AGCCTTGCCGCATTTCCAGGGGCCTCTCGGTACGTTGCGGGCCCCGCATT
GCAGGGCTCGACGACCGTGGTGGCCGACGAAGCGCTCCACAACATCCTCC
GCGCGATGCTGGCCCTGTCGTACGAACCCGCCCCCTAGCGGTGATGGTGG
AACAGGGTGTGACAGCTCGCCTCAGCCGCTTGGCTTTCGACGGATCCGTG
GCAATCGCCGCACTTATCACCGCCGGCGCCGCAGCTACGCCCCCGGTCCC
ACCGCCGGAGCATGCCTCAGAAGCCGTGCGCTCGCCGTTCGTGACCGCTT
GCGGCCTTCTGAATAACATCCTGAACTCTGCGGGCCACCTTCCGTGGCCT
CAGACGAGTGCCGTCTTGCGCCGGGTTGCGGTTCGTGCGGGCAAGAAAGG
AGAGCTCTGCGCCCCTCGAGCCTTGAGCCACCCGGTGTTAGCACACCCTG
AGACGGGCGAGTGCTTAGTATCGCTCGCGGAGGTGGCGGGTTTAGCGGGT
GCAGCACGTCGCGCCGGCGGTGGGGCGCGCTGGCGGCTGCTTGCGGGACA
GGCCACCCTCGTCATCATGATCGTCGCCTGCAGCGGTCTAGCGCCCGGAG
ACGGACTGGTGGACAGGCGGTCGCGCTGGGGCCAGGAGGGTGAAGGGCGT
AGAGAGGACCGTTCCTGTTCTGCTCCGTCTGTGTGGGAAAGTATGGCACA
AGCCGTAGATGAAGCCCTTGGTTCCTTGAGCCCGGCGCCAGGGCGGGGGT
TAATCGGAACCAGAGACGAGGAAGAGGCGCCTTACGAGGAAGGAGCGATA
TGGCAGTGGTGTCTGGAGTGTGCTAGGGCGATCGAAGCTGAGACGGGTGG
TGCTGACGAAAACCCTTATGTCGCCGTCGGAATAATGCCGTGGAAGGTGT
TACGGAGTCTTGGGGAGGCGTCTGCAGACTGTCGGATTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7272:6270..8160+

>mRNA_F-serratus_M_contig7272.18503.1 ID=mRNA_F-serratus_M_contig7272.18503.1|Name=mRNA_F-serratus_M_contig7272.18503.1|organism=Fucus serratus male|type=CDS|length=1596bp|location=Sequence derived from alignment at F-serratus_M_contig7272:6270..8160+ (Fucus serratus male)
ATGGTGGAACAGGGTGTGACAGCTCGCCTCAGCCGCTTGGCTTTCGACGG
ATCCGTGGCAATCGCCGCACTTATCACCGCCGGCGCCGCAGCTACGCCCC
CGGTCCCACCGCCGGAGCATGCCTCAGAAGCCGTGCGCTCGCCGTTCGTG
ACCGCTTGCGGCCTTCTGAATAACATCCTGAACTCTGCGGGCCACCTTCC
GTGGCCTCAGACGAGTGCCGTCTTGCGCCGGGTTGCGGTTCGTGCGGGCA
AGAAAGGAGAGCTCTGCGCCCCTCGAGCCTTGAGCCACCCGGTGTTAGCA
CACCCTGAGACGGGCGAGTGCTTAGTATCGCTCGCGGAGGTGGCGGGTTT
AGCGGGTGCAGCACGTCGCGCCGGCGGTGGGGCGCGCTGGCGGCTGCTTG
CGGGACAGGCCACCCTCGTCATCATGATCGTCGCCTGCAGCGGTCTAGCG
CCCGGAGACGGACTGGTGGACAGGCGGTCGCGCTGGGGCCAGGAGGGTGA
AGGGCGTAGAGAGGACCGTTCCTGTTCTGCTCCGTCTGTGTGGGAAAGTA
TGGCACAAGCCGTAGATGAAGCCCTTGGTTCCTTGAGCCCGGCGCCAGGG
CGGGGGTTAATCGGAACCAGAGACGAGGAAGAGGCGCCTTACGAGGAAGG
AGCGATATGGCAGTGGTGTCTGGAGTGTGCTAGGGCGATCGAAGCTGAGA
CGGGTGGTGCTGACGAAAACCCTTATGTCGCCGTCGGAATAATGCCGTGG
AAGGTGTTACGGAGTCTTGGGGAGGCGTCTGCAGACTGTCGGATTTAGAT
GGTGGAACAGGGTGTGACAGCTCGCCTCAGCCGCTTGGCTTTCGACGGAT
CCGTGGCAATCGCCGCACTTATCACCGCCGGCGCCGCAGCTACGCCCCCG
GTCCCACCGCCGGAGCATGCCTCAGAAGCCGTGCGCTCGCCGTTCGTGAC
CGCTTGCGGCCTTCTGAATAACATCCTGAACTCTGCGGGCCACCTTCCGT
GGCCTCAGACGAGTGCCGTCTTGCGCCGGGTTGCGGTTCGTGCGGGCAAG
AAAGGAGAGCTCTGCGCCCCTCGAGCCTTGAGCCACCCGGTGTTAGCACA
CCCTGAGACGGGCGAGTGCTTAGTATCGCTCGCGGAGGTGGCGGGTTTAG
CGGGTGCAGCACGTCGCGCCGGCGGTGGGGCGCGCTGGCGGCTGCTTGCG
GGACAGGCCACCCTCGTCATCATGATCGTCGCCTGCAGCGGTCTAGCGCC
CGGAGACGGACTGGTGGACAGGCGGTCGCGCTGGGGCCAGGAGGGTGAAG
GGCGTAGAGAGGACCGTTCCTGTTCTGCTCCGTCTGTGTGGGAAAGTATG
GCACAAGCCGTAGATGAAGCCCTTGGTTCCTTGAGCCCGGCGCCAGGGCG
GGGGTTAATCGGAACCAGAGACGAGGAAGAGGCGCCTTACGAGGAAGGAG
CGATATGGCAGTGGTGTCTGGAGTGTGCTAGGGCGATCGAAGCTGAGACG
GGTGGTGCTGACGAAAACCCTTATGTCGCCGTCGGAATAATGCCGTGGAA
GGTGTTACGGAGTCTTGGGGAGGCGTCTGCAGACTGTCGGATTTAG
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