mRNA_F-serratus_M_contig726.18495.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A0V1KQY5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1KQY5_9BILA) HSP 1 Score: 166 bits (419), Expect = 5.070e-39 Identity = 139/452 (30.75%), Postives = 203/452 (44.91%), Query Frame = 1
Query: 31 TEERASVRGQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEG-EFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYAR-QSVREHKMAPKEEKCVFM------RIPRIFPTGTVSVLLVRSRNIVES--QAWALSEHEEGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNI---PPILSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADI 1347
TE R SV G+ +V GP H S+GGN Y + F D + ++ V F+K K + L + + + ++ IR D G EF E L + I HE TPP TPQ NG+AER L KA ++ N+PR LWA+A+ A + N+ + + K+PYE WFG+ PT +HLR FG Y K PK K +F+ ++ R+F T V V ES + L + EE + ++ + ED E + E + P + LR++S L P E E G E +W+++ E+ + N + P D+ I K ++K I DG+V K K RLVA+G+ Q + Y E ++P SVR LLA+AA +D E+ FD + AFL I
Sbjct: 274 TERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTALTEIKQETGRDVQRIRTDRGTEFANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLAEKARAMLHTR----NLPR-CLWAEAVHTAAYLLNR-IPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFDTNKHRVDKVTDVQFNESLQKRLVLIDGEEDSWMQTADKD-----EDDFLEYDITDDKTEKRGPGRPPGSKNKIKVISNPLKMELRSKSTE-----RTAMLAAADPLTEEEALEGANAE--KWKESMLEEISALHMNDTWILTDLPADRKTIQCKWVFKSKINSDGEVSKYKARLVAKGYSQRAEIDYFETFAPVVRYESVRTLLAIAADEDLEILQFDVKTAFLHGKI 707
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A224X581_9HEMI (Putative polyprotein (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X581_9HEMI) HSP 1 Score: 164 bits (414), Expect = 2.810e-38 Identity = 131/448 (29.24%), Postives = 207/448 (46.21%), Query Frame = 1
Query: 73 NVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEG-EFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYA-RQSVREHKMAPKEEKCVFMRIP------RIFPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSEN-----EREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVED----------EWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADI 1347
+V GPM+ S G Y V F+D+ +R+ V+F+K K + A VA T + I+C+++DNG EF EF L + I T TPQ NG+AER L A L+ E +P WA+A+ + + N+ +S EGK+PYELW G+ P + + FG+ + + R+ K + E+ +F+ RI+ T V + R +E Q +E +E L E E + E+ G + + +P RR + + P EV E + + E DEW A E+ +++N +K V+RP+D+ VIG++++ + DG +E+ K RLVAQGF Q GVH++E ++P +SVR+L A+AA D ++ FD AFL ++
Sbjct: 473 DVCGPMRIESNGKARYFVTFIDDNSRWCEVRFIKSKDEVLQAFKEFVALIETQKGKKIRCLQSDNGTEFVNKEFDDFLKAKGIKRRLTVSYTPQQNGIAERKNRTLLDMARCLISES----KLP-PSFWAEAVYTSNYIRNRC-PSSCLEGKTPYELWTGRKPNVSYFKEFGSKVFCLNKDPRKGKFEDRSEEGIFLGYSEESKGFRIWKPKTKKVEITRDVKFLEKQNTISNEDSNLEEEKLESKGQEFIEIEFKSEEPGTFQDICDSQSSDVVEENTSEIRVMKRLPGRPKRIRCGRRGRPRKQYNEIEIIQPDEEVAEYACLSEVPMKSALSSSEADEWFNAMMEEIKSVIKNKTWKIVSRPEDQHVIGSRIVLRNKYKPDGTLERRKARLVAQGFSQKPGVHFSETFAPVCRLSSVRLLAALAAHHDMKIHQFDITAAFLNGEL 914
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A8J5YMD5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YMD5_9ROSI) HSP 1 Score: 160 bits (405), Expect = 1.410e-37 Identity = 127/428 (29.67%), Postives = 199/428 (46.50%), Query Frame = 1
Query: 88 MKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEGE-FQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYARQSVREH-KMAPKEEKCVFMRIPR------IFPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRS----RRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFL 1335
MK +S GN Y +F+D+CTRF V F+K+KSD A +KC+R+DNG E+ + FQ+ D I H+ T TPQ N V ER ++ A L+ E +P WA+A+ + + N+ ++T+ +GK+P+E WFG+ PT HLR FG + YA + K+ + VF+ R IF T +++ R E W +GT +L E ++ P L +E PI RT + R T VE C+ A++ E W++A E E+ + +N ++ V RP+++ VIG K +++ DG + K K RLV +G+ Q +GV + E ++P ++R L A+AA K ++ D + AFL
Sbjct: 1 MKTTSPNGNRYFALFIDDCTRFCWVTFLKQKSDVADFFCKFKALVENQANCKLKCLRSDNGTEYVSQRFQKICDDAGILHQLTTIYTPQQNSVCERKNRIVLDMAGCLLFEA----KMPNN-FWAEAVNTSVYLLNR-LSTNAVKGKTPFEAWFGQKPTVSHLRVFGCLCYALVPAEKRTKLEKRSMPGVFVGYSRVKKGYRIFDPLTKKIIVSRDVKFNEEGYWKW----DGTNASLLEEDQNS--------PDLQPPEIEAEAEDDYDDA-------PIRGTRTLADIYERCAMTIVEPS---CYAKAVKEEC----------WQEAMEAELKMIQKNDTWELVNRPENRKVIGVKWVFRTKTNSDGFLNKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRFLFALAAQKQWKVHQLDVKSAFL 390
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 160 bits (404), Expect = 2.690e-37 Identity = 198/739 (26.79%), Postives = 316/739 (42.76%), Query Frame = 1
Query: 73 NVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGE-FEGEFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRG--KAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYARQSVREHKMAPKEEKCVFMRIPRI-----FPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSE-NER-----EQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPI-LSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADIGPKQGHLRTRAG----GEVLEQ*VM*RHDGGWIRAGKSGPVRVP*GR*R*GGDGGGRTHRRHPCPHQRPS-----------DDG*VRG*---------AWAEVH--IEGYG-------------RRRVLHGMS--HHKEPQGARVEVRPTL---------VREGRN------EEVPVPRGCGGAHVDGDDDTAGYCGRRTRCGQVLRKPWAGA*EGSDEDLPVSLSHERMGDT------YGGQRCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWYSRMQEVIVLGTSEAEYV 2058
+V GP+ H + GG Y + F+D+ +R+ + +K KS++ + IK +R+D GGE F EF+ L I + TPP TPQ NGVAER L ++M+ M EL W A+ A + N+ T S +PYELW GK P+ +H++ +G + R+S K+ P+ ++C+F+ P++ F + + V I + ++L+E T+ L E N+R + +E+ P S E PP+ L+L + + + A+ + + + W+KA E+EM M N V+ V +P+ IG K IYKR +G GKVE K RLVA+G+ Q G+ Y E +SP S+R+LL++AA D E+ D + AFL +I ++ ++ G G+ + + + G +A +S +R G + PC +++ S DD + G W H ++ G R++ L G+S ++ + AR ++ + V +N EE R C A G A C R C V + G + V + + T +G + L ++ YTDSDF + +D R+S+SG V L KGAISW S Q+ T EAEY+
Sbjct: 23 DVCGPLTHMARGGFFYFITFIDDHSRYGYLYLMKHKSESFEKFKEFRNEVEKQTGKCIKILRSDRGGEYFLDEFKDYLKDNGIISQLTPPGTPQHNGVAERRNRTLLDMVRSMMSMSELP-------VSFWGYALETAIYLLNRVPTKSVPN--TPYELWTGKKPSLNHIKIWGCPSHVRKS-NVDKLGPRSDRCLFVGYPKMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESR--TKVTLEEQNDRPMTVPSENNEEQVIVPTEPSNMQEPRRSTRIIR-------PPVRLTLLNEIYQMESDGFDNDPVTYQEAMN-------DKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIR-EEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAI----KSFGFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSK--DLNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYI 728
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI) HSP 1 Score: 159 bits (403), Expect = 4.050e-37 Identity = 131/449 (29.18%), Postives = 206/449 (45.88%), Query Frame = 1
Query: 22 PKKTEERASVRGQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEF-EGEFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYAR-QSVREHKMAPKEEKCVFMRIP------RIFPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRS---RRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFL 1335
P T RAS + + +V GPM+ SL GN Y ++F+D+CTR+ + F+K KS+ + A T IK IR+DNG E+ +FQ I H+ T TPQ NGV+ER L A L+ E N+P+ +WA+A+ A + N+ T + K+P+E WFG P+ H++ FG + Y++ +V+ K++ + + RI T + + R E W +E EA+ E Q E +P + + P+ RT + R H E CF E E G W++A + E+ + +N ++ V RP ++ VIG K +Y+ DG + K K RLV +GF Q G+ Y E ++P ++R+L+A+AA K ++ D + AFL
Sbjct: 169 PTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQNGVSERKNRSLVDMARCLLFEK----NLPKT-MWAEAVNTAVYIQNRLPTKALAH-KTPFEAWFGFKPSLAHMKVFGCLCYSQVPAVKRDKLSKRAVPGILTGYSMVKKGYRILNPLTNKIQVSRDVVFDEKACWNWERNEP---EAIPEELVTDQFEADQNDPEM------------------DVDDEPVRGTRTLADVYERAHVAQEEPC--CFE---EAEAHQG-------WKQAMDDEIAMIEKNKTWELVPRPTNRKVIGVKWVYRAKQNADGSLNKLKARLVVKGFSQKYGLDYMETFAPVARLDTIRLLIALAAQKQWKIHQLDVKSAFL 578
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 159 bits (402), Expect = 8.540e-37 Identity = 209/763 (27.39%), Postives = 324/763 (42.46%), Query Frame = 1
Query: 61 RFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLS-IKCIRADNGGEF-EGEFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAM---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYARQSVREHKMAPKEEKCVFMRIPRIFPTGTVSVL-----LVRSRNIV-ESQAWALSEHEEGTQEALSENEREQQHEDGGA-----------------------------EPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRSRRPHTGVEGKALHCFL-PAIEVEEE--NGVEDE---WDE---------WRKAEETEMLGMVENCVYKQVAR-PKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADIGPKQGHLRTRAGGEVLEQ*VM*RHDGGWIRAGKS--GPVRVP*GR*R*GGDGGGRTHRRHPCPHQRPSDDG*VRG*AWAEVHIEGYGRR---------RVLHGMSHHKEPQGARVEV------RPTLVREG--RNEEVPVPRGCGGAHVDGDDDTAGYCGRRTRCGQVLRKPWAGA*EGSDEDLPVSL-SHE-RMGDTYGGQRCGLCME--------------------AYTDSDFGACLDTRRSVSGAVLMLAKGAISWYSRMQEVIVLGTSEAEY 2055
R FV++GG +S+GG Y +I D+ TR + F++ KSD +A S +A+ S I+ +R+DNGGEF GEF + I E TP +P+ NGVAER GL+ AM I + L + +P+ ++LWA+AM +AC+ N + ++ + KSPYE+W+G+ A PF Y + R K+ PK E C ++ R P VL + +RN+ E+ L + ++E E E+ +D A E ++ XXXXXXXXXX PP +RRP V+ + A+E+ +E VE E + E W KA E+ G++ + A+ P+ VI + ++K + GK+ K K RLVA+GF Q GV Y E +SPT AS+R+++A+A + EL H D EQAF+++ + + ++ G + + G +R KS G R+ AEV +E G R G + ++ + +E+ R L R R +P V +D+ AG R G ++ E S+ V+ SHE + D Q+ ++ Y D+DF + RR VSGA++++A +SW+S Q+ + L TSEAEY
Sbjct: 477 RVFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEESDDDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESMDXXXXXXXXXXXXXXXVEVEASPPA------ARRPQHVVDLADFNTAARDAVELPKELIQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLD-HEVFMKLPPGCDSM--------SGKIVRLNKSLYGTKRL-------------------------------------AEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVM-EDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTIVYVDADFASKATDRRPVSGALILVAGCLVSWFSWTQKCVSLSTSEAEY 1184
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA) HSP 1 Score: 159 bits (402), Expect = 8.730e-37 Identity = 137/452 (30.31%), Postives = 201/452 (44.47%), Query Frame = 1
Query: 31 TEERASVRGQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEG-EFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYAR-QSVREHKMAPKEEKCVFM------RIPRIFPTGTVSVLLVRSRNIVES--QAWALSEHEEGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNI---PPILSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADI 1347
TE R SV G+ +V GP H S+GGN Y + F D + ++ V F+K K + L + + ++ IR D G EF EF L + I HE +PP TPQ NG+AER L KA ++ N+P+ LWA+A+ A + N+ + + K+PYE WFGK PT +HLR FG Y K K K +F+ ++ R+F T V V ES + L + EE ++ + + H++ + E + P + LR++S L P E E G E +WR+A E+ + N + P D+ I K I+K G+V K K RLVA+G+ Q + Y+E ++P SVR LLA+AA +D E+ FD + AFL I
Sbjct: 465 TERRQSVPGEILHADVCGPFIHPSVGGNCYFICFKDESSGYRKVYFMKTKFEVLRCLKIAMTEIKQETGRDMQRIRTDEGTEFVNREFDNFLTEKKIVHEKSPPYTPQCNGMAERENRTLVEKARSMLHAR----NLPKG-LWAEAVHTAAYLLNR-IPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRKKFDRKARKVIFVGYGPSNKMFRVFDTNKHRVDEVTDVKFNESLQKRLVLIDGEEEIWMQTADKDEDNIHKED-----IPDDKTEKRGPGRPPGSRNKIKVIGNPLKMELRSKSTE-----RTAMLAAADPLTEEEALRGANAE--KWREAMLEEITALHMNNTWILTDLPSDRKTIQCKWIFKSKTNSHGEVSKYKARLVAKGYSQRAEIDYSETFAPVVRYESVRTLLAIAADEDLEILQFDVKTAFLHGKI 898
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: Q7XET2_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XET2_ORYSJ) HSP 1 Score: 159 bits (401), Expect = 1.230e-36 Identity = 132/442 (29.86%), Postives = 203/442 (45.93%), Query Frame = 1
Query: 55 GQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEG-EFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYARQSVREHKMAPKEEKCVFMRIPRIFPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSENEREQQHEDGGA---------EPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRSRRPHTGVEGKALHCFLPAIEVEE-ENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFLKADI 1347
GQ ++ GP + S+GG YV++ VD+ +R+ V F+ K + L S+K IR+DNGGEF+ F++ + R + HE + P PQ N V ER +L A +++E K WA+A+ AC ++N+ V + GK+ YEL FG P HLR FG + +S K + +F+ P T VL++ + IVE+ + E GT+ ++ + Q EDG + +GSA TRS+ T + A F+ + E ++ + + DE W A E+ N V+ V P VIGTK ++K +DG + + K RLVAQGF QVEG+ + E ++P ++R+LLA AA+K +L D + AFL I
Sbjct: 621 GQLLHMDTVGPARVQSVGGKWYVLVIVDDFSRYSWVFFMTTKDEAFQHFRGLFLRLELEFPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNSVVERKNRVLVEMARTMLDEYKTT-----RKFWAEAINTACYISNR-VFLRSKLGKTSYELRFGHQPKVSHLRVFGCKCFVLKSGNLDKFEARSTDGLFLGYPA--HTRGYRVLILGTNKIVETCEVSFDEASPGTRPDIAGTLSQVQGEDGRIFEDESDYDDDDEVGSAGERT----------------------TRSKV--TTHDVCANSAFVASFEPKDVSHALTDE--SWINAMHEELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFI 1028
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A2Z6N9Q0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N9Q0_TRISU) HSP 1 Score: 158 bits (400), Expect = 1.420e-36 Identity = 128/447 (28.64%), Postives = 212/447 (47.43%), Query Frame = 1
Query: 22 PKKTEERASVRGQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFE-GEFQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYAR-QSVREHKMAPKEEKCVFMRIP------RIFPTGTVSVLLVRSRNIVESQAWALSEHE-EGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFDAEQAFL 1335
P ++ RAS + Q +V GPM +SL GN Y ++F+D+ TR V F++++SD A S IK +R+DNG E+ GEF+ ++ I H+ T P TPQ NGV+ER + A L+ E +P+ WA+A+ + + N + T +GK+P+E W+ + P+ +HLR FG V Y +V+ K+ K +F+ RI+ T +L+ R E W + + EG+ + +S E +L N E N P TR R + + L E VE W+ A + EM + +N ++ V +P+++ +IG K +Y+ + DG + K K RLV +G++Q GV +++ ++P ++R+L+A+AA ++ HF + AFL
Sbjct: 506 PVESTWRASEKLQLIHTDVCGPMPTTSLNGNKYFLLFIDDFTRMCWVFFLRQESDVFPAFQSFKLMVEKEVDCQIKKLRSDNGNEYTAGEFKVFCEQVGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEK----GIPKT-FWAEAVNTSVYLLNL-LPTKVLKGKTPFEAWYERKPSVEHLRIFGCVCYLHVPNVKRDKLETKSVVGIFLGYSSNSKGYRIYNLETKKILVSRDVQFDEFSKWNWEKSQTEGSSKVMS------------TEDSLEDQNSEDEGENYD-------NFP------TRGTRTLDDIYARCNIATLEPTRYAEAANVEG----WKVAMQEEMKMIEKNQTWQLVDKPENQKIIGVKWVYRTKLNPDGSINKLKARLVVKGYFQQHGVDFSDTFAPVARHDTIRLLVALAAKLGWKIYHF--KLAFL 915
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Match: A0A8J6CTJ0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CTJ0_9ROSI) HSP 1 Score: 157 bits (397), Expect = 3.280e-36 Identity = 126/434 (29.03%), Postives = 203/434 (46.77%), Query Frame = 1
Query: 40 RASVRGQRFFVNVGGPMKHSSLGGNSYVVIFVDNCTRFKVVKFVKKKSDTTAALLSLVADCVTPQKLSIKCIRADNGGEFEGE-FQRELDRRSITHEHTPPDTPQ*NGVAERAFGLLRGKAMILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGKLPTADHLRPFGAVGYAR-QSVREHKMAPKEEKCVFMRIP------RIFPTGTVSVLLVRSRNIVESQAWALSEHEEGTQEALSENEREQQHEDGGAEPALGSANLEXXXXXXXXXXXXXXNIPPILSLRTRSRRPHTGVEGKALHCFLPAIEVEEENGVEDEWDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMIYKRNIGQDGKVEK*KCRLVAQGFWQVEGVHYTEKYSPTPPTASVRMLLAMAAAKDGELRHFD 1317
RA R Q N+ GPMK +S GN Y +F+++CTRF V F+K+KSD A +KC+R+DNG E+ + FQ++ D I H+ T TPQ NG ER + A L+ E +P WA+A+ + + N+ + T+ +GK+P+E WFG+ P HLR FG + YA + ++ K+ + VF+ RIF T +++ R E W +GT +L E ++ P L +E PI R + E A+ P+ E V+D+ W++A E E+ + +N ++ V RP+++ VIG K +++ DG ++K K RLV +G+ Q +GV + E ++P ++R+L +AA K + F+
Sbjct: 329 RAQERLQLVHTNICGPMKTTSPNGNRYFALFINDCTRFCWVTFLKQKSDVADFFCKFKALAENQANCKLKCLRSDNGTEYVSQRFQKKCDDAGILHQLTTIYTPQQNGACERKNRTVLDMAKCLLFEA----KMPNN-FWAEAVNTSVYLLNR-LPTNAVKGKTPFEAWFGQKPIMSHLRVFGCLCYALVPAEKKTKLEKRSIPGVFVGYSSVKKGYRIFDPLTKKIIVSRDVKFNEEGYWKW----DGTNASLLEEDQNS--------PDLQPTEIEAEAEDDYDDA-------PIRGTRILADI----YERCAMTLVEPSCYAE---AVKDKC--WQEAMEAELKMIQKNDTWELVNRPENRKVIGVKWVFRTKTNSDGSLKKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRLLFTLAAQKQWKPEGFE 728 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig726.18495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig726.18495.1 >prot_F-serratus_M_contig726.18495.1 ID=prot_F-serratus_M_contig726.18495.1|Name=mRNA_F-serratus_M_contig726.18495.1|organism=Fucus serratus male|type=polypeptide|length=258bp MILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTDEGKSPYELWFGback to top mRNA from alignment at F-serratus_M_contig726:332306..334766+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig726.18495.1 ID=mRNA_F-serratus_M_contig726.18495.1|Name=mRNA_F-serratus_M_contig726.18495.1|organism=Fucus serratus male|type=mRNA|length=2461bp|location=Sequence derived from alignment at F-serratus_M_contig726:332306..334766+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig726:332306..334766+ >mRNA_F-serratus_M_contig726.18495.1 ID=mRNA_F-serratus_M_contig726.18495.1|Name=mRNA_F-serratus_M_contig726.18495.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig726:332306..334766+ (Fucus serratus male)back to top |