mRNA_F-serratus_M_contig724.18483.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig724.18483.1
Unique NamemRNA_F-serratus_M_contig724.18483.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D7G0M0_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M0_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.020e-34
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVFA 393
            GFY+G++  +FT G  LS Y WG   D  GRKPV++I + SI + S+  G+S +Y+MAIT RF LGLT+ ++P  R  + E+ GP   V+GM  I G R++ ++IG  +GG LAQPA+H+PT FSPTG+FA
Sbjct:   32 GFYAGYVASSFTFGRFLSGYVWGSATDIIGRKPVIIIGLLSITIFSMIFGMSETYSMAITTRFILGLTNGIMPALRTSLSEVCGPEHVVLGMTYISGTRAISMVIGTGIGGLLAQPALHYPTVFSPTGLFA 162          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D8LP17_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP17_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.700e-32
Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVFA 393
            G+Y+G++  +FT G  L++Y WG  AD  GRKPVV++ + SI   SV  GLSTS+AMA+  RF LGLT+ ++P  R +  E+ GP   V GM  I G++ VG+++G A+GG LAQPA  +P  FS TGVFA
Sbjct:   59 GYYAGYVASSFTFGRFLTAYVWGNAADTIGRKPVVIVGLSSIMACSVVFGLSTSFAMAVGSRFVLGLTNGIMPAVRTLTREVCGPEHVVSGMNYIAGSKGVGLVMGTAIGGLLAQPASTYPGVFSATGVFA 189          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.420e-30
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            G+Y+G++  AF +G + SSY WGRFAD +GR PV+   + S+ VLS+A GLSTS+  A+  RF LG+ + L+ I++ M  E+ G      GMA + G  S+G++IGP +GG LA+PA H+PT FS +G+F
Sbjct:   69 GYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLGCASIGLVIGPGLGGLLAEPATHYPTVFSQSGLF 198          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.790e-29
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            G+Y+G L  AF +G   +S      ADRYGR PVV I + SIGVLS+A GLST++  A+T RF LG  + L+ I++ M+ EI G     +GM  + G  S G++IGPA GG LAQPA H+P  FS +G+F
Sbjct:  116 GYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTGCSSFGLVIGPAFGGLLAQPATHYPNVFSESGLF 245          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.030e-28
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            G+Y+G+L  AF +G           ADRYGR PVV I + SIGVLS+A GLST++  A+T RF LG  + L+ I++ M+ EI G     +GM  I G  S G++IGPA GG LAQPA H+P  FS +G+F
Sbjct:   48 GYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLF 177          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.130e-28
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVI-GMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            GFY+G++ GAFTLG  LS Y WG  +D  GR+PV+++ + +  VLS+  GLST+Y +AI+ RF LG+ + + P  R  V E+ G    V+  MA I GAR+  I+ G AMGG L QP  H+P+ FS TG+F
Sbjct:    7 GFYAGYVAGAFTLGRFLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYEVAISSRFVLGIMNGITPAVRTTVYEVCGTNSHVVQAMAYIDGARASTIVFGSAMGGLLVQPVDHYPSVFSATGLF 137          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: A0A6H5JEL7_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.350e-28
Identity = 65/160 (40.62%), Postives = 89/160 (55.62%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIG---------MALIPGARSV--------------------GIIIGPAMGGFLAQPAVHHPTSFSPTGVFA 393
            GFY+G++  +FT G  LS Y WG   D  GRKPV++I + SI + S+  G+S +YAMAI  RF LGLT+ ++P  R  + E+ GP   V+G         + L   ARSV                     ++IG  +GG L QPA+H+PT FSPTG+FA
Sbjct:   11 GFYAGYVASSFTFGRFLSGYAWGSATDIIGRKPVIIIGLLSITIFSIIFGMSETYAMAIITRFILGLTNGIMPALRTSLSEVCGPEHVVLGKQRATITKDLLLSRLARSVVQNESHFPTQTLNSHVSGAISMVIGTGIGGLLVQPALHYPTLFSPTGLFA 170          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.390e-28
Identity = 61/130 (46.92%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            G+Y+G+L  AF +G           ADRYGR PVV I + SIGVLS+A GLST++  A+T RF LG  + L+ I++ M+ EI G     +GM  + G  S G++IGPA GG LAQPA H+P  FS +G++
Sbjct:   80 GYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLY 209          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: D8LET2_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.970e-27
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVI-GMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            GFY+G++  A+ LG+ LS Y WG  +D  GRKPV+++ + ++ VLS+  GLST+Y +AI+ RF LG+ + ++P  R  V E+      V+  MA I GA++V I+ G AMGG L QP  H+P  FS TG+F
Sbjct:   61 GFYAGYVASAYMLGHFLSGYLWGYASDSVGRKPVILVGLLAVAVLSLTFGLSTTYELAISSRFVLGVMNGIMPAIRTTVYEVCTTNSHVVQAMAYIDGAKAVTIVFGSAMGGLLVQPVDHYPNVFSGTGLF 191          
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Match: PTR36_ARATH (Probable peptide/nitrate transporter At3g43790 n=15 Tax=Camelineae TaxID=980083 RepID=PTR36_ARATH)

HSP 1 Score: 114 bits (284), Expect = 4.090e-27
Identity = 53/130 (40.77%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALGLSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARSVGIIIGPAMGGFLAQPAVHHPTSFSPTGVF 390
            GFY+G++  +F +G  L+S  WG+ ADRYGRKP+++I   S+ + +   GLSTS+ +AI++RF LG  +CL+ + R    E++      + ++++  +R +G+I+GPA+GG+LAQPA  +P  FS + VF
Sbjct:   75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKYPNIFSQSSVF 204          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig724.18483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M0_ECTSI1.020e-3449.62MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LP17_ECTSI2.700e-3249.62MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRH9_ECTSI2.420e-3046.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE5.790e-2948.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI2.030e-2848.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJK9_ECTSI2.130e-2847.33MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEL7_9PHAE2.350e-2840.63MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4Q8_9PHAE7.390e-2846.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET2_ECTSI3.970e-2745.04MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
PTR36_ARATH4.090e-2740.77Probable peptide/nitrate transporter At3g43790 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig724contigF-serratus_M_contig724:265407..266271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D7G0M0
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size397
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig724.18483.1prot_F-serratus_M_contig724.18483.1Fucus serratus malepolypeptideF-serratus_M_contig724 265409..266271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.391931-CDS-F-serratus_M_contig724:265408..2655121622932212.391931-CDS-F-serratus_M_contig724:265408..265512Fucus serratus maleCDSF-serratus_M_contig724 265409..265512 -
1690964201.0539386-CDS-F-serratus_M_contig724:265408..2655121690964201.0539386-CDS-F-serratus_M_contig724:265408..265512Fucus serratus maleCDSF-serratus_M_contig724 265409..265512 -
1622932212.4108713-CDS-F-serratus_M_contig724:265874..2659781622932212.4108713-CDS-F-serratus_M_contig724:265874..265978Fucus serratus maleCDSF-serratus_M_contig724 265875..265978 -
1690964201.073772-CDS-F-serratus_M_contig724:265874..2659781690964201.073772-CDS-F-serratus_M_contig724:265874..265978Fucus serratus maleCDSF-serratus_M_contig724 265875..265978 -
1622932212.4271898-CDS-F-serratus_M_contig724:266086..2662711622932212.4271898-CDS-F-serratus_M_contig724:266086..266271Fucus serratus maleCDSF-serratus_M_contig724 266087..266271 -
1690964201.087097-CDS-F-serratus_M_contig724:266086..2662711690964201.087097-CDS-F-serratus_M_contig724:266086..266271Fucus serratus maleCDSF-serratus_M_contig724 266087..266271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig724.18483.1

>prot_F-serratus_M_contig724.18483.1 ID=prot_F-serratus_M_contig724.18483.1|Name=mRNA_F-serratus_M_contig724.18483.1|organism=Fucus serratus male|type=polypeptide|length=131bp
GFYSGWLFGAFTLGNILSSYGWGRFADRYGRKPVVVISMCSIGVLSVALG
LSTSYAMAITIRFFLGLTDCLVPIARIMVPEILGPGKAVIGMALIPGARS
VGIIIGPAMGGFLAQPAVHHPTSFSPTGVFA
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mRNA from alignment at F-serratus_M_contig724:265407..266271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig724.18483.1 ID=mRNA_F-serratus_M_contig724.18483.1|Name=mRNA_F-serratus_M_contig724.18483.1|organism=Fucus serratus male|type=mRNA|length=865bp|location=Sequence derived from alignment at F-serratus_M_contig724:265407..266271- (Fucus serratus male)
GGCTTCTACTCGGGTTGGCTATTTGGCGCTTTTACTCTCGGCAATATTCT TTCTAGCTATGGCTGGGGTCGTTTCGCGGATCGGTATGGACGGAAACCCG TCGTGGTCATCAGCATGTGTTCCATCGGCGTTTTATCCGTCGCCTTGGGC CTGTCTACGTCATACGCTATGGCCATCACCATCAGGTGAAAAATTGCCTA TTTGTTTCCATTATGTTGCACTTGCACGTTTAGTAATATTATTAGTCTGT CGAGGTAGAGCTAAAGTGCCCGATGATGACATATATTCGGCAGGTTTTTC CTCGGGCTCACAGACTGCCTTGTTCCCATAGCGAGAATCATGGTCCCCGA GATCCTTGGTCCCGGAAAAGCTGTGATTGGGATGGCTCTCATTCCCGGTG AGCGATCCTACAGACGAATGTGACATCGAGGGGGCATTATCGGCTGTATT CTCTCTATGCGTTTTAAGAATGCGGAGGTTTTCGAAGAGAGGCTTGATAC CGAATGCATTCTGTAGTATATCCCTGGTCCCTCAAATAATGTGATTGGGA TGATTGTCCTTCCCAATGAGCGATCCTCCAGACGAATGTGACATCGAAGA GGCATTATCCACTGTGTCACTCTAAATCACTTGGGAATGCGGATGTATAC TGCAGTATATGATATTTGATGTACCACTGTAGACGTCATTCTGTGAAAGT AGAGGAATTTATTATCATGCGGCGTATCGCACCGCGCTCGTCCCTTGTCC GCTACTCAGGTGCTCGATCCGTGGGGATCATCATCGGACCGGCGATGGGA GGCTTCCTTGCCCAGCCGGCCGTTCATCACCCAACCTCATTTTCCCCGAC GGGCGTGTTCGCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig724:265407..266271-

>mRNA_F-serratus_M_contig724.18483.1 ID=mRNA_F-serratus_M_contig724.18483.1|Name=mRNA_F-serratus_M_contig724.18483.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig724:265407..266271- (Fucus serratus male)
GGCTTCTACTCGGGTTGGCTATTTGGCGCTTTTACTCTCGGCAATATTCT
TTCTAGCTATGGCTGGGGTCGTTTCGCGGATCGGTATGGACGGAAACCCG
TCGTGGTCATCAGCATGTGTTCCATCGGCGTTTTATCCGTCGCCTTGGGC
CTGTCTACGTCATACGCTATGGCCATCACCATCAGGGCTTCTACTCGGGT
TGGCTATTTGGCGCTTTTACTCTCGGCAATATTCTTTCTAGCTATGGCTG
GGGTCGTTTCGCGGATCGGTATGGACGGAAACCCGTCGTGGTCATCAGCA
TGTGTTCCATCGGCGTTTTATCCGTCGCCTTGGGCCTGTCTACGTCATAC
GCTATGGCCATCACCATCAGGTTTTTCCTCGGGCTCACAGACTGCCTTGT
TCCCATAGCGAGAATCATGGTCCCCGAGATCCTTGGTCCCGGAAAAGCTG
TGATTGGGATGGCTCTCATTCCCGGTTTTTCCTCGGGCTCACAGACTGCC
TTGTTCCCATAGCGAGAATCATGGTCCCCGAGATCCTTGGTCCCGGAAAA
GCTGTGATTGGGATGGCTCTCATTCCCGGTGCTCGATCCGTGGGGATCAT
CATCGGACCGGCGATGGGAGGCTTCCTTGCCCAGCCGGCCGTTCATCACC
CAACCTCATTTTCCCCGACGGGCGTGTTCGCAGTGCTCGATCCGTGGGGA
TCATCATCGGACCGGCGATGGGAGGCTTCCTTGCCCAGCCGGCCGTTCAT
CACCCAACCTCATTTTCCCCGACGGGCGTGTTCGCA
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