mRNA_F-serratus_M_contig723.18474.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig723.18474.1
Unique NamemRNA_F-serratus_M_contig723.18474.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig723.18474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig723contigF-serratus_M_contig723:45596..45929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig723.18474.1prot_F-serratus_M_contig723.18474.1Fucus serratus malepolypeptideF-serratus_M_contig723 45596..45883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932210.4919155-CDS-F-serratus_M_contig723:45595..456761622932210.4919155-CDS-F-serratus_M_contig723:45595..45676Fucus serratus maleCDSF-serratus_M_contig723 45596..45676 +
1690964200.1025286-CDS-F-serratus_M_contig723:45595..456761690964200.1025286-CDS-F-serratus_M_contig723:45595..45676Fucus serratus maleCDSF-serratus_M_contig723 45596..45676 +
1622932210.513979-CDS-F-serratus_M_contig723:45847..458831622932210.513979-CDS-F-serratus_M_contig723:45847..45883Fucus serratus maleCDSF-serratus_M_contig723 45848..45883 +
1690964200.124245-CDS-F-serratus_M_contig723:45847..458831690964200.124245-CDS-F-serratus_M_contig723:45847..45883Fucus serratus maleCDSF-serratus_M_contig723 45848..45883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932210.5288231-UTR-F-serratus_M_contig723:45883..459291622932210.5288231-UTR-F-serratus_M_contig723:45883..45929Fucus serratus maleUTRF-serratus_M_contig723 45884..45929 +
1690964200.1352499-UTR-F-serratus_M_contig723:45883..459291690964200.1352499-UTR-F-serratus_M_contig723:45883..45929Fucus serratus maleUTRF-serratus_M_contig723 45884..45929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig723.18474.1

>prot_F-serratus_M_contig723.18474.1 ID=prot_F-serratus_M_contig723.18474.1|Name=mRNA_F-serratus_M_contig723.18474.1|organism=Fucus serratus male|type=polypeptide|length=39bp
GYDHESSTHRHFISLLTFLLKKGVMMKVDYELRVQDQE*
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mRNA from alignment at F-serratus_M_contig723:45596..45929+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig723.18474.1 ID=mRNA_F-serratus_M_contig723.18474.1|Name=mRNA_F-serratus_M_contig723.18474.1|organism=Fucus serratus male|type=mRNA|length=334bp|location=Sequence derived from alignment at F-serratus_M_contig723:45596..45929+ (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGTGTGTGATCGAGTTACAG
ACAACTACAAAATGGACGTGAAACTGAGGATCGAACGACAGTTCTGACTG
ACGACAGTGTCCATTATTACCTTAGGGCGAGGCAAAATACCTCGCGCGTG
GTTTTGTTTCTGGATTCGAAAATTTCCCATACAGCATAATTTGTTTTGAC
AGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAGG
CCACCGTAAGAGACGACGAGGGCGTAATGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig723:45596..45929+

>mRNA_F-serratus_M_contig723.18474.1 ID=mRNA_F-serratus_M_contig723.18474.1|Name=mRNA_F-serratus_M_contig723.18474.1|organism=Fucus serratus male|type=CDS|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig723:45596..45929+ (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGGGTATGATCACGAGAGCA
GCACCCATCGGCATTTCATCTCCCTTCTGACTTTCCTTTTGAAAAAGGGT
GTCATGATGAAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGGT
GGACTACGAGCTTCGAGTACAAGACCAAGAGTAG
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