mRNA_F-serratus_M_contig7213.18465.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7213.18465.1
Unique NamemRNA_F-serratus_M_contig7213.18465.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7213.18465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7213contigF-serratus_M_contig7213:4969..5790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7213.18465.1prot_F-serratus_M_contig7213.18465.1Fucus serratus malepolypeptideF-serratus_M_contig7213 4969..5696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.567744-CDS-F-serratus_M_contig7213:4968..50271622932209.567744-CDS-F-serratus_M_contig7213:4968..5027Fucus serratus maleCDSF-serratus_M_contig7213 4969..5027 -
1690964199.70031-CDS-F-serratus_M_contig7213:4968..50271690964199.70031-CDS-F-serratus_M_contig7213:4968..5027Fucus serratus maleCDSF-serratus_M_contig7213 4969..5027 -
1622932209.582178-CDS-F-serratus_M_contig7213:5530..56961622932209.582178-CDS-F-serratus_M_contig7213:5530..5696Fucus serratus maleCDSF-serratus_M_contig7213 5531..5696 -
1690964199.7130303-CDS-F-serratus_M_contig7213:5530..56961690964199.7130303-CDS-F-serratus_M_contig7213:5530..5696Fucus serratus maleCDSF-serratus_M_contig7213 5531..5696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.59998-UTR-F-serratus_M_contig7213:5696..57901622932209.59998-UTR-F-serratus_M_contig7213:5696..5790Fucus serratus maleUTRF-serratus_M_contig7213 5697..5790 -
1690964199.7240994-UTR-F-serratus_M_contig7213:5696..57901690964199.7240994-UTR-F-serratus_M_contig7213:5696..5790Fucus serratus maleUTRF-serratus_M_contig7213 5697..5790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7213.18465.1

>prot_F-serratus_M_contig7213.18465.1 ID=prot_F-serratus_M_contig7213.18465.1|Name=mRNA_F-serratus_M_contig7213.18465.1|organism=Fucus serratus male|type=polypeptide|length=75bp
MDTFLPTVCAHVLNALTRTKICVYCCNYKSIFIMWYSKCVRFGFCLVFPH
GVSCKLYSLTVGFSPTLYCLLTQRY
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mRNA from alignment at F-serratus_M_contig7213:4969..5790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7213.18465.1 ID=mRNA_F-serratus_M_contig7213.18465.1|Name=mRNA_F-serratus_M_contig7213.18465.1|organism=Fucus serratus male|type=mRNA|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig7213:4969..5790- (Fucus serratus male)
AATCTAATCTTCCCACCTCTCCCGCGTCCTCGCCTACGTTTTTTGTCGCG
ATGCAATTTCAGTCCTCTTTACACCTCGTCGACCAATCATATCAATGGAT
ACATTTTTACCTACTGTCTGCGCTCACGTTCTCAACGCTTTGACCAGAAC
AAAAATATGTGTATACTGCTGTAATTATAAATCTATTTTTATTATGTGGT
ACTCAAAATGTGTTCGTTTTGGTTTTTGTCTGGTGTTCCCGCATGGCGTT
TCATGCAAGTGTAAAGAATAACGGTGGAGTTCTCCGAGGTATTATACTGC
TGATCCCATGTTACTACCATCGGGGAACCCGTTGAAATGCCATGAAGTGT
TGTGTGTGTGTGTTGTACTTGAGAAGACGAATTCCTATTTTCCTCGCCCT
CTATCGTACTTGAGAAGAGCGGATGCTGCAATGCGGTCACTGCAGCTCGA
CTCCTGCCTCTCCTCTATGCAAGCGCGGAGAATGGAAAAGACCCGTTCCA
TGAACGCAGAGGATGGCTGCAATAATACGATATCCTTCGCAACATTGTAC
CAGTGATTAAGCCTGGCCCTACTGTTACGCCAGAATTCCCACAAGTCGTA
CAGTACCGGCCGGCTCGTAAGAATGGATGCAACAAGAAACCATAACCTAG
GTAACAAGTATATTATCACTACCATGTCTGATGAGTCACTACATTATTTT
GTTTGCTGCTGTTTTTCTGGTGTTGCTGTTTTTCTGGTGTCCCTGCATGG
CGATTATTGTAAGTGTACAGTTTGACGGTGGGTTTCTCCCCGACATTATA
CTGCCTGTTGACCCAACGTTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7213:4969..5790-

>mRNA_F-serratus_M_contig7213.18465.1 ID=mRNA_F-serratus_M_contig7213.18465.1|Name=mRNA_F-serratus_M_contig7213.18465.1|organism=Fucus serratus male|type=CDS|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig7213:4969..5790- (Fucus serratus male)
ATGGATACATTTTTACCTACTGTCTGCGCTCACGTTCTCAACGCTTTGAC
CAGAACAAAAATATGTGTATACTGCTGTAATTATAAATCTATTTTTATTA
TGTGGTACTCAAAATGTGTTCGTTTTGGTTTTTGTCTGGTGTTCCCGCAT
GGCGTTTCATGCAAGTATGGATACATTTTTACCTACTGTCTGCGCTCACG
TTCTCAACGCTTTGACCAGAACAAAAATATGTGTATACTGCTGTAATTAT
AAATCTATTTTTATTATGTGGTACTCAAAATGTGTTCGTTTTGGTTTTTG
TCTGGTGTTCCCGCATGGCGTTTCATGCAAGTTGTACAGTTTGACGGTGG
GTTTCTCCCCGACATTATACTGCCTGTTGACCCAACGTTACTGTACAGTT
TGACGGTGGGTTTCTCCCCGACATTATACTGCCTGTTGACCCAACGTTAC
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