mRNA_F-serratus_M_contig720.18440.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18440.1
Unique NamemRNA_F-serratus_M_contig720.18440.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:182990..183604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18440.1prot_F-serratus_M_contig720.18440.1Fucus serratus malepolypeptideF-serratus_M_contig720 183031..183411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.9147449-UTR-F-serratus_M_contig720:182989..1830301622932203.9147449-UTR-F-serratus_M_contig720:182989..183030Fucus serratus maleUTRF-serratus_M_contig720 182990..183030 +
1690964197.0576332-UTR-F-serratus_M_contig720:182989..1830301690964197.0576332-UTR-F-serratus_M_contig720:182989..183030Fucus serratus maleUTRF-serratus_M_contig720 182990..183030 +
1622932203.9534433-UTR-F-serratus_M_contig720:183411..1836041622932203.9534433-UTR-F-serratus_M_contig720:183411..183604Fucus serratus maleUTRF-serratus_M_contig720 183412..183604 +
1690964197.0781078-UTR-F-serratus_M_contig720:183411..1836041690964197.0781078-UTR-F-serratus_M_contig720:183411..183604Fucus serratus maleUTRF-serratus_M_contig720 183412..183604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.9296784-CDS-F-serratus_M_contig720:183030..1834111622932203.9296784-CDS-F-serratus_M_contig720:183030..183411Fucus serratus maleCDSF-serratus_M_contig720 183031..183411 +
1690964197.0672684-CDS-F-serratus_M_contig720:183030..1834111690964197.0672684-CDS-F-serratus_M_contig720:183030..183411Fucus serratus maleCDSF-serratus_M_contig720 183031..183411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18440.1

>prot_F-serratus_M_contig720.18440.1 ID=prot_F-serratus_M_contig720.18440.1|Name=mRNA_F-serratus_M_contig720.18440.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MHKKSSLYEIQDFRKKRHHFQSTHRSRLMCFFVIFTCLLCSFAEGNFEAI
KLQCDREQIPPFLTSHYSQILRTIISLHFQLKPLPIVHPSKLPICRGGCT
ICIYVCMYCYTLVLRYSFVPGANPTI*
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mRNA from alignment at F-serratus_M_contig720:182990..183604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18440.1 ID=mRNA_F-serratus_M_contig720.18440.1|Name=mRNA_F-serratus_M_contig720.18440.1|organism=Fucus serratus male|type=mRNA|length=615bp|location=Sequence derived from alignment at F-serratus_M_contig720:182990..183604+ (Fucus serratus male)
GTGCGAGTACAGACAGATAAAATATTCGACCTGTTGAATCCATGCATAAA
AAATCATCTCTGTACGAAATTCAAGATTTTAGGAAAAAACGTCATCACTT
TCAAAGTACGCATCGATCACGTTTGATGTGTTTTTTTGTTATCTTCACTT
GTCTTTTATGCAGTTTTGCTGAAGGCAATTTTGAAGCCATAAAATTACAA
TGTGATCGCGAGCAAATCCCACCCTTTCTCACGTCACACTATTCCCAAAT
ACTTCGTACCATTATTAGTCTCCACTTCCAGCTCAAACCACTTCCAATCG
TCCACCCCTCAAAGCTCCCTATCTGTCGTGGTGGCTGTACCATATGTATT
TATGTTTGTATGTATTGTTATACTTTGGTGCTACGGTATAGTTTTGTACC
AGGTGCGAACCCCACGATTTGAAAATAAAGATAGAACAGCCCTTTTTTAC
TCATTTTCGTGAAAATGAAATTAGAGAAACCAATCACTGGACACACTGCT
ATTTTGAACCTAGGGTCACGGTGTGACTAAATCGACACACACAAGATAAA
ATTTACTTCCTTCAAAATAAGAGTCAATGATTGGCTCGAGTTGAAAGCAA
TGCTTTATTCAGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:182990..183604+

>mRNA_F-serratus_M_contig720.18440.1 ID=mRNA_F-serratus_M_contig720.18440.1|Name=mRNA_F-serratus_M_contig720.18440.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig720:182990..183604+ (Fucus serratus male)
ATGCATAAAAAATCATCTCTGTACGAAATTCAAGATTTTAGGAAAAAACG
TCATCACTTTCAAAGTACGCATCGATCACGTTTGATGTGTTTTTTTGTTA
TCTTCACTTGTCTTTTATGCAGTTTTGCTGAAGGCAATTTTGAAGCCATA
AAATTACAATGTGATCGCGAGCAAATCCCACCCTTTCTCACGTCACACTA
TTCCCAAATACTTCGTACCATTATTAGTCTCCACTTCCAGCTCAAACCAC
TTCCAATCGTCCACCCCTCAAAGCTCCCTATCTGTCGTGGTGGCTGTACC
ATATGTATTTATGTTTGTATGTATTGTTATACTTTGGTGCTACGGTATAG
TTTTGTACCAGGTGCGAACCCCACGATTTGAATGCATAAAAAATCATCTC
TGTACGAAATTCAAGATTTTAGGAAAAAACGTCATCACTTTCAAAGTACG
CATCGATCACGTTTGATGTGTTTTTTTGTTATCTTCACTTGTCTTTTATG
CAGTTTTGCTGAAGGCAATTTTGAAGCCATAAAATTACAATGTGATCGCG
AGCAAATCCCACCCTTTCTCACGTCACACTATTCCCAAATACTTCGTACC
ATTATTAGTCTCCACTTCCAGCTCAAACCACTTCCAATCGTCCACCCCTC
AAAGCTCCCTATCTGTCGTGGTGGCTGTACCATATGTATTTATGTTTGTA
TGTATTGTTATACTTTGGTGCTACGGTATAGTTTTGTACCAGGTGCGAAC
CCCACGATTTGA
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