mRNA_F-serratus_M_contig720.18452.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18452.1
Unique NamemRNA_F-serratus_M_contig720.18452.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:347041..348282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.7033477-CDS-F-serratus_M_contig720:347040..3471611622932203.7033477-CDS-F-serratus_M_contig720:347040..347161Fucus serratus maleCDSF-serratus_M_contig720 347041..347161 -
1690964196.9941628-CDS-F-serratus_M_contig720:347040..3471611690964196.9941628-CDS-F-serratus_M_contig720:347040..347161Fucus serratus maleCDSF-serratus_M_contig720 347041..347161 -
1622932203.7213533-CDS-F-serratus_M_contig720:348208..3482821622932203.7213533-CDS-F-serratus_M_contig720:348208..348282Fucus serratus maleCDSF-serratus_M_contig720 348209..348282 -
1690964197.005531-CDS-F-serratus_M_contig720:348208..3482821690964197.005531-CDS-F-serratus_M_contig720:348208..348282Fucus serratus maleCDSF-serratus_M_contig720 348209..348282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18452.1prot_F-serratus_M_contig720.18452.1Fucus serratus malepolypeptideF-serratus_M_contig720 347041..348282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18452.1

>prot_F-serratus_M_contig720.18452.1 ID=prot_F-serratus_M_contig720.18452.1|Name=mRNA_F-serratus_M_contig720.18452.1|organism=Fucus serratus male|type=polypeptide|length=65bp
AGDSCDSGLASPVPPTPRGSAGCESERVREEKERREKAAELLAHLRDKHD
ADAERARVTFMSSK*
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mRNA from alignment at F-serratus_M_contig720:347041..348282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18452.1 ID=mRNA_F-serratus_M_contig720.18452.1|Name=mRNA_F-serratus_M_contig720.18452.1|organism=Fucus serratus male|type=mRNA|length=1242bp|location=Sequence derived from alignment at F-serratus_M_contig720:347041..348282- (Fucus serratus male)
GCTGGCGACTCCTGTGATTCAGGCTTGGCGAGCCCGGTGCCTCCCACTCC
GAGGGGCTCCGCGGGATGTGAAAGGTGCTTGACATGTGGTGTAGTGTTAT
ATACCCAGGTAGAAGTATCAAGCGTCTGTCCAGCTATCGATATCCCCGCC
CCTCCGCAGAACCTTTTTTTCGCAGAACAAAATCCGAGAATATGCCTGTC
TTGTATGGATGCCTAGTTCTCGATGTAGGTCTATCTACATAGGCCAAGTA
GGCTTGGTTTACCACAGTAGACTATATAGTTGACTTTTACGTCGAACTGC
GGTTAGAAAGGAAATATGGCGGGGGAATAAAGGAGATAGATACCAGTACA
AGATACTGTATTATAGTATAGTATAGTATAGTTGCGATCCGGTAGGGGGT
ATCGGATGGTTCGCGGCTGGTGGTGTAGCAAACTCTCCCTCTCCCTCTCC
CTCTCCCTCTCCCTCTCCCCCTCCCTATATACATTAATACATTAATACAT
TAACACAGTACAGTACCTGGTATCGACTATCGAAGGCCCTTGTCTTGTTC
GTGTTTGTTATCTCTATCGCCATGCTTTCATTCGTTTTCTATTATATTTT
ATTGGTTGGTTCCTTGCGCGTCTCTGCATCTCATTAATACTGTACCAGGT
ACCTTTTTCTATGTGTGCTCTCGTTGGAGCTTTGTGGATGTTCCTCTGAT
CTTTTCCTGTCCAGCAGACGACGTACTGATTGGCATTGGTAACCGCGTAT
TATACAATATCGGTTGACAAAAACATGAAATTCTTGCTTAAGGTCCGGAT
CCATTGTACTTTCAGGGTCTTACCAGGGCACTTTGATTGTATGCGCGGGC
CTTTATTGGTCGAACTGACAGGGATGATAACAGTGCTACTCTTGCTATAA
CTGTCCAAATACGAATGTCGTCTAAAGAGTATGTAGTATAGTCATGACAT
TTACAGGAACAGAGTACCAGGTACGAGGTAAGGTTGCTAATCCTATTAAT
AGACCTTTTTTTTTGTCCACAATTACGGTCATGCCTAAATGGTTAAATTA
TCTCCAATGGTACGGTACGGTACGTTACGGGTTATGGTATGACTGTCACG
CCTTTTTTGTCTCGTGTTTAGCGAAAGAGTGCGCGAGGAAAAAGAACGGC
GCGAAAAAGCTGCGGAGCTTCTTGCCCACCTAAGGGATAAGCACGACGCC
GACGCGGAGCGAGCACGGGTAACCTTCATGTCGAGCAAGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:347041..348282-

>mRNA_F-serratus_M_contig720.18452.1 ID=mRNA_F-serratus_M_contig720.18452.1|Name=mRNA_F-serratus_M_contig720.18452.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig720:347041..348282- (Fucus serratus male)
GCTGGCGACTCCTGTGATTCAGGCTTGGCGAGCCCGGTGCCTCCCACTCC
GAGGGGCTCCGCGGGATGTGAAAGGCTGGCGACTCCTGTGATTCAGGCTT
GGCGAGCCCGGTGCCTCCCACTCCGAGGGGCTCCGCGGGATGTGAAAGCG
AAAGAGTGCGCGAGGAAAAAGAACGGCGCGAAAAAGCTGCGGAGCTTCTT
GCCCACCTAAGGGATAAGCACGACGCCGACGCGGAGCGAGCACGGGTAAC
CTTCATGTCGAGCAAGTAACGAAAGAGTGCGCGAGGAAAAAGAACGGCGC
GAAAAAGCTGCGGAGCTTCTTGCCCACCTAAGGGATAAGCACGACGCCGA
CGCGGAGCGAGCACGGGTAACCTTCATGTCGAGCAAGTAA
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