mRNA_F-serratus_M_contig72.18426.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18426.1
Unique NamemRNA_F-serratus_M_contig72.18426.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.600e-126
Identity = 198/253 (78.26%), Postives = 210/253 (83.00%), Query Frame = 1 
Query:    1 MKSFSAAAAYLCALSPAAAFVPSAXXXXXXXXXXXTT-RMVATPDRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPKWVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGD-GPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFF 753
            MKSF AAA  LCAL+PA+AFVP A           +   M ATP+RSI+IPIDPYPEGLDGEM GDVGFDPAGFANNPP WVQGEG+GTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGN VLG DRFAEMNPLLAY  IP AGGIQIVVT+LILE IRLNRS+R D G  GDIGLGQGEGRWNPF FNYTEEEY  KQLQE+K+GR AMIGI GMY QT+VQG+ IL QL EAFS P  VAKAGYFF
Sbjct:    1 MKSFVAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 253
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA)

HSP 1 Score: 265 bits (676), Expect = 4.240e-79
Identity = 131/216 (60.65%), Postives = 156/216 (72.22%), Query Frame = 1 
Query:  112 RMVATPDRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            RM A  D S A+P D  P  LDG +PGDVGFDP GF+NNPP+ W+ G GSG +  +KWYREAE+ HGRVAMLAA GW+FP IYH PGN  +G D FA +NP  A   +P AG  QI  T+  +EL R+NR +RGD   GD+GLGQGEGRWNPFGFNY+EEEY  KQLQE+KNGR AM+GI G+  Q  V GK I+ QL  +F VP  V+KAGY+FP
Sbjct:   77 RMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG-GSGRS--LKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFP 289
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA)

HSP 1 Score: 252 bits (643), Expect = 5.910e-75
Identity = 136/248 (54.84%), Postives = 166/248 (66.94%), Query Frame = 1 
Query:   16 AAAAYLCALSPAAAFVPSAXXXXXXXXXXXTTRMVATPDRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            A AA   A++PAAAF+P +             +MV+  +RS AIP D  PE LDG + GDVGFDPAGF+NNPP+ W+ G   G    +KWYREAE+ HGR AMLAA GWI PE  HFPGN  +G D FA+ NP  A   +P AG  QI  T+  +E+ R+NR VRG   PGD+GLGQG    NPFGFNYTEEEYK KQLQELKNGR AM+ I GM+ Q+ +  + ++AQLS AF+ P  V KAGY+FP
Sbjct:    3 AVAALAFAVAPAAAFLPVSAPVAPAQGS--VMKMVS--ERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFP 241
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.610e-72
Identity = 129/248 (52.02%), Postives = 163/248 (65.73%), Query Frame = 1 
Query:   16 AAAAYLCALSPAAAFVPSAXXXXXXXXXXXTTRMVATPDRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            A AA     +PAAAFVP              +++V   +RS AIP D  PE LDG + GDVGFDPAGF+NNPP+ W+ G   G    +KWYREAE+ HGR AMLAA GW+ PE  HFPGN  +G D FA+ NP  A   +P AG  QI  T+  +E+ R+NR VRGD  PGD+GLGQG    NPFGF+Y+EE+Y+ KQLQE+KNGR AM+ I GM+ Q  +  + ++++LS AF+ P  V KAGYFFP
Sbjct:    3 AVAALALLAAPAAAFVP-------VTPVATPSKVVLQAERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFP 238
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK)

HSP 1 Score: 233 bits (594), Expect = 9.250e-68
Identity = 117/211 (55.45%), Postives = 144/211 (68.25%), Query Frame = 1 
Query:  130 DRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPE-IYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            +RS A+P+DPYPEGLDG M GDVGFDPAGFANNPPK W+ G G  +   + WYREAELAHGRVAMLA  GW FPE  YHFPGN + GQD FAE NP+ A    P  G IQI + +  +E+ R+   +RGD  PGD+ LGQ  G  NPFG NY ++EY + +++E+K+GR AM+GI GM  Q    G  +  QL  AF+ P  V  AGY+FP
Sbjct:   40 ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRAPGDLNLGQ-RGAINPFGLNYDDDEYFLMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYFP 246
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE)

HSP 1 Score: 228 bits (580), Expect = 4.670e-65
Identity = 113/194 (58.25%), Postives = 133/194 (68.56%), Query Frame = 1 
Query:  130 DRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSE 708
            DRSIA+P D YP GLDG + GD GFDPAGF NN P+ W+ G   G    +KWYREAE+ H RVAMLA  GWIFPEI HF GN  +GQD FAE+NPL A    P AG +QI   +  LE  R+ R ++GD   GD+GLGQGEGRWNPF FNY+ EEYK  Q +E+KNGR AMIGI  M AQ    G+ +L QL +
Sbjct:   96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQ 286
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC)

HSP 1 Score: 222 bits (565), Expect = 2.020e-63
Identity = 117/215 (54.42%), Postives = 141/215 (65.58%), Query Frame = 1 
Query:  130 DRSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPK-WVQGEGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSV-PGDVAKAGY----FFP 756
            DRS+A+P+D  P  LDG +PGD GFDP GF+NN P+ W+ G   G    +KWYREAEL H RVAMLAA GWIFPEI+H PGN  +G D FAE NP  A   +P  G  QI  T+  +E  RL R VRG+   GD+GLGQGEGRWNPFGF + E+EY   Q++E+KNGR AMI I GM  Q  V G+ +L Q+ E F + PG    AG     FFP
Sbjct:   46 DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGFGLGPGYRLPAGTGLQKFFP 257
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN)

HSP 1 Score: 205 bits (522), Expect = 1.790e-57
Identity = 109/197 (55.33%), Postives = 137/197 (69.54%), Query Frame = 1 
Query:  172 LDGEMPGDVGFDPAGFANNPP-KWVQG-EGSGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            LDG + GDVGFDP GF+   P  W QG EG G+   +K +REAEL HGR+A LA  GWIFPE+YHFPG +    D FA+MNP  A   IP AG +QI+  +  LE++R+NR       PGD+GLGQGEGRWNPFGF+YT EEY  KQLQE+K+ R AM+GIAG+ A++      +L QL E+FS P  V+KAG++FP
Sbjct:   52 LDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYFP 241
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A7S2UVQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ7_9STRA)

HSP 1 Score: 199 bits (505), Expect = 4.440e-55
Identity = 110/210 (52.38%), Postives = 137/210 (65.24%), Query Frame = 1 
Query:  133 RSIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPPKWVQGEGSGTAAR-VKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQG-KPILAQLSEAFSVPGDVAKAGYFFP 756
            +SIA+P    P GLDG +PGDVGFDP GF NN P       SG +AR +KWYREAEL HGR+ MLA  G IFPEIYHFPGN  +G D F+E+N L A+  +P     QI++    +E+ RL  +V GD P GD+ LGQ  G +NP   N++EEEY + Q +E+K+ R AMIG  G   Q    G  P+L QL EAF+VP  V+KAGYFFP
Sbjct:   36 KSIALPWQEAPPGLDGTLPGDVGFDPFGFTNNLPTT-----SGPSARSLKWYREAELIHGRICMLATLGVIFPEIYHFPGNEGVGMDVFSELNALKAFYTVPDFAIYQILLFAGAVEIWRLRNTVLGDRPAGDLNLGQ-FGAYNPAKLNFSEEEYFLMQTREIKHCRLAMIGFLGQVLQLRANGGTPLLQQLGEAFTVPEAVSKAGYFFP 239
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BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Match: A0A7S0FUH9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUH9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.900e-52
Identity = 107/214 (50.00%), Postives = 134/214 (62.62%), Query Frame = 1 
Query:  136 SIAIPIDPYPEGLDGEMPGDVGFDPAGFANNPP-KWVQG-EG-SGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYH-FPGNNVLGQDRFAEMNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGP---PGDIGLGQGEGRWNPFGFNYTEEEYKVKQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYFFP 756
            S A+P    P  LDG M GD GFDP GF+  P   W  G EG  G    + WYREAEL HGR+A +A  G+I P ++   PGN   G D ++  NPL A+ ++PGA  +QI + +  LE+ R+N  +R +G    PGD+ +GQGEGRWNPFG +YT EEY  K+LQELK+ R AMIGI G++AQ    G  I  QL  AFS P  VAKAGYF P
Sbjct:   37 SQALPFATAPATLDGSMLGDAGFDPLGFSTVPVGPWFNGFEGRDGQIGDLSWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEATGLDAYSNTNPLEAFSQVPGAAILQIFLFMTYLEIKRIN-IIREEGAAYLPGDLRIGQGEGRWNPFGLDYTPEEYDEKRLQELKHCRLAMIGIFGLWAQAQASGVGITDQLGAAFSTPDYVAKAGYFLP 249
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR2_ECTSI1.600e-12678.26Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
W7TTD7_9STRA4.240e-7960.65Light-harvesting protein n=3 Tax=Monodopsidaceae T... [more]
A0A836CAI0_9STRA5.910e-7554.84Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YWE6_9STRA1.610e-7252.02Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A6V1NAG2_HETAK9.250e-6855.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H236_9ALVE4.670e-6558.25Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4ELJ2_VITBC2.020e-6354.42Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0Y1D8_AURAN1.790e-5755.33Uncharacterized protein LHC9 n=1 Tax=Aureococcus a... [more]
A0A7S2UVQ7_9STRA4.440e-5552.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FUH9_9STRA7.900e-5250.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:862236..868447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.3
Seed ortholog evalue3.4e-106
Seed eggNOG ortholog2880.D7FUR2
Preferred nameLhca6
KEGG koko:K08908
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs2CNEI@1,2QVPT@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-19_004240.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons3
Model size2266
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18426.1prot_F-serratus_M_contig72.18426.1Fucus serratus malepolypeptideF-serratus_M_contig72 862236..866955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932202.3469515-CDS-F-serratus_M_contig72:862235..8628471622932202.3469515-CDS-F-serratus_M_contig72:862235..862847Fucus serratus maleCDSF-serratus_M_contig72 862236..862847 +
1690964196.4825928-CDS-F-serratus_M_contig72:862235..8628471690964196.4825928-CDS-F-serratus_M_contig72:862235..862847Fucus serratus maleCDSF-serratus_M_contig72 862236..862847 +
1622932202.365273-CDS-F-serratus_M_contig72:865155..8653091622932202.365273-CDS-F-serratus_M_contig72:865155..865309Fucus serratus maleCDSF-serratus_M_contig72 865156..865309 +
1690964196.4999933-CDS-F-serratus_M_contig72:865155..8653091690964196.4999933-CDS-F-serratus_M_contig72:865155..865309Fucus serratus maleCDSF-serratus_M_contig72 865156..865309 +
1622932202.3848283-CDS-F-serratus_M_contig72:866947..8669551622932202.3848283-CDS-F-serratus_M_contig72:866947..866955Fucus serratus maleCDSF-serratus_M_contig72 866948..866955 +
1690964196.5156257-CDS-F-serratus_M_contig72:866947..8669551690964196.5156257-CDS-F-serratus_M_contig72:866947..866955Fucus serratus maleCDSF-serratus_M_contig72 866948..866955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932202.4027927-UTR-F-serratus_M_contig72:866955..8684471622932202.4027927-UTR-F-serratus_M_contig72:866955..868447Fucus serratus maleUTRF-serratus_M_contig72 866956..868447 +
1690964196.5332515-UTR-F-serratus_M_contig72:866955..8684471690964196.5332515-UTR-F-serratus_M_contig72:866955..868447Fucus serratus maleUTRF-serratus_M_contig72 866956..868447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18426.1

>prot_F-serratus_M_contig72.18426.1 ID=prot_F-serratus_M_contig72.18426.1|Name=mRNA_F-serratus_M_contig72.18426.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MKSFSAAAAYLCALSPAAAFVPSAPSLASVRSAPSTTRMVATPDRSIAIP
IDPYPEGLDGEMPGDVGFDPAGFANNPPKWVQGEGSGTAARVKWYREAEL
AHGRVAMLAAAGWIFPEIYHFPGNNVLGQDRFAEMNPLLAYGKIPGAGGI
QIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFNYTEEEYKV
KQLQELKNGRAAMIGIAGMYAQTVVQGKPILAQLSEAFSVPGDVAKAGYF
FPTDQPM*
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mRNA from alignment at F-serratus_M_contig72:862236..868447+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18426.1 ID=mRNA_F-serratus_M_contig72.18426.1|Name=mRNA_F-serratus_M_contig72.18426.1|organism=Fucus serratus male|type=mRNA|length=6212bp|location=Sequence derived from alignment at F-serratus_M_contig72:862236..868447+ (Fucus serratus male)
ATGAAGTCCTTCTCTGCCGCAGCTGCGTATCTGTGCGCCCTATCCCCGGC
TGCAGCCTTCGTCCCGTCCGCGCCTTCGCTTGCCAGCGTTCGCAGCGCAC
CCTCCACGACCAGGATGGTCGCCACCCCCGATCGTTCCATCGCCATCCCG
ATCGATCCCTACCCGGAGGGCCTTGACGGTGAAATGCCAGGAGACGTGGG
TTTCGACCCCGCAGGGTTCGCGAACAACCCGCCAAAGTGGGTGCAGGGGG
AGGGAAGCGGCACCGCGGCTCGCGTCAAGTGGTACAGGGAAGCAGAGCTA
GCTCACGGCCGGGTAGCGATGCTCGCGGCCGCGGGGTGGATTTTCCCCGA
GATCTACCACTTCCCGGGAAACAACGTGCTCGGACAAGACAGGTTCGCTG
AGATGAACCCGCTCCTTGCCTACGGAAAAATCCCGGGTGCAGGTGGCATC
CAGATCGTGGTCACCCTCCTCATCCTTGAGCTCATCCGGCTGAACAGGAG
TGTGCGTGGCGACGGTCCCCCGGGGGACATCGGGCTTGGCCAGGGCGAGG
GACGCTGGAACCCCTTCGGTTTCAACTACACCGAGGAGGAGTACAAAGTG
AAACAGCTGCAGGTTGGTGCATGATGAGAAGCATGTCCAGGAGACCTTGT
ACAGAGCACAGCTAGCTTACGCTATGATGTTTTTGAGTCTCCTTGCGGTT
CATTAATGAACGCAGCAGAGAACAGGCGCTCTCGAAACCAAGTTCTTCAT
GCGACAAACATGAACGGCGCGTCTTACGTTGACTCACAAATGTGCACACA
CACCTTTCAGAGTCTGTTGTACAAAACACAAGTGTTCTGGAAAGGGAGGG
ATCATGGTGCAACGTACGTCTCGTACAAGTATAGACACAGCGGTATTATT
CTTTAGGACATAATGACTCCGTGGATTGGATGCATGCAGCGCTCGCACTT
CCCCAGAGAGGATGACCGGCATCAAGGTGGATGCTTCAGAGAAACAAGAT
GCATATGTCAGCATTCACACGCAGCATGCACAAAAGTCATTTAAAAAAAA
AATCTTGATCAGAGATTGCGTATGATTCACGACGCGCGAGATTGCTCGAG
AGGTGAAAAACCTATATATAGACAGTAGTCAGTAGTACTAGGTATGGTAG
AGGCCCGATCGGTTAATGTGAAGAAGACAACAACATAGTACTAATAATAA
TAGCTTTACGAGTACTAACTGTACAGACAATTAAGTAGCACTACACGTAC
TCCGATTGTATTAGTTTTAAAGAACAACACATGAGAGGATTTTCTTTGTT
CAATTTTTTTTTTATGCATCTATGTACAGACATCACGTTGAGCAGATTCG
GCACCGGTTGCCGAATCATTCCCGTGGTCAGTTAGCTAAACAGGAGACAA
CATGTTTTTCTCTGTCCCAATTTGCACGCCTGAGAATTTAGTCTCGCGAA
ACAGGTTCGGCCGTTTTACACGCCCAGCCAGGCTAAAATCTTGTGCATGC
GCTCTTTCACGATAGTTGACATCATACGTCATCGAAATTTGTGCTCTATA
CCACCATCTATCTACACTACTGTCTGTGTAGCTCGATTTTGCCGAAGCAC
ACAAGGCATCAATCAGGGCTCTGAATTCGACCGACGAGTCTGCGAACTCC
CTCGAGTGTACAAGTAACCTCGACATTGCCCCGAAACCTTGCGCCTTTTT
CTCACAGCACCTGCCAAGGACGGGGTCAATAGCTACTACAGCATAAAGTT
GACGAAGTACGTACATTGGCGCCCGTCTCCGAGCTGAGTGGTTAAACTGC
GTAGTTGGACGGGACACGGAACTGACTGTAGTACAGTACAGCGTACCTAC
AGACAGTAGTACTGCTGTCTGCTGGAGTACTTTAAATAGTTAATATTGTA
TCTTGTGTATCGATATCCTCCTCTCAGTAACGCAATATGATCCAAACAAG
AGTGTAAATGCATACCTGGTACATGTGTTGCGTTCAACTGGCTCTAATCC
TGCTACACATCTGTATCGATATCCTTTTGTCAGTAACGCTGTGTGTACAA
ACAAAGGAGCTGTAAATAAAATACCTGGTCGGAGTACCCACGTTTTTATT
TTTTGTTCCTTGGGAGCACCAGGAATCTCGTTTTTCTAGACAACTTAGGG
CGTAAGTCTTTGTGAGTGTGATCGTGATGCGATGCTCACGAACATCATGC
GGCTCATGCAGGGTTCAAGAGAGTGGGAGTCAGTCGTTCACGAGAGAGCT
CGCCGACGGTTCCAGTTTTTTTTgTTTTTTTTTTTTTACTCTACAGCAGT
TTGACGGATTATCAAAAGCAAGGGTAGCCACTACGCACAAGCGAGCGATA
TTTTTTACAACGCTCTTGTCCATACTGCATTCCAAATATTTCACGTTGTT
TTTTTCGTTGGGGGTTTCATCGCGCAGTGAAAATATTTGTATCTTCTTAT
GTCTCCTCCAGCTGCGGCGGCGCCGAGTGTTGGGCGTGTCTGATTGACCC
CCATGGCGGGGGTGGAGTTGGACATCTGATGGAGAGCGCTCGGACGAAAT
TTTGCGTCAGTCTCGTCAAAGAGCGAGAACTCACTCACATGAATGCGCTT
ACCGCGTGGCCTCAATCGCACGGAAACCCATTATACGACATATATAGAGT
CTATACGAGCAGTACCGCATCCCCTTTGCCCGTCTCGACTAACGCCTCTT
TCCTTCGAAACCtTTTTTTCGTGTACGAGTACAGACAATATAAAGCTGGT
AGCGTACGGTGTATCAATGCTTCCCCCTTCAAAGAAACAGCTTCTACCCC
TTTAGGGTGGTGAAGCGTGCGCCTCTTCCTTCGATGATCCCTTGCCCCTC
CCCTCCCTTCCCTTTCCCTTGTTGCTTTTTTGTTTCGGGTGTGTTTTTTT
TACTGATTACGTCTATACAGGAGTTGAAGAACGGCCGCGCTGCCATGATC
GGAATCGCGGGCATGTACGCTCAGACCGTCGTCCAGGGCAAGCCGATTCT
CGCGCAGCTCAGCGAGGCCTTTTCCGTCCCGGGCGACGTGGCGAAGGCCG
GGTACTTCTTCCCCACTGATCAGCGTGAGTTTTTCAAAACACCCTTGTCG
TTTTTGTTTGAAGACCCATTTGTTCCCTTTCCCTCTCCCTTCCTCCATTC
CCCTTAATCTAAAGATGGATGCCCCCCGAAGTTCTGGTAGCTCTCACGAG
TAGGACATGACGAGTATAGAGACTTGATTAGAGACCAGACCCCCCCCCCC
CAAAAAAAAAAAAACCCCTGTTAATACTAGGGAGAGAAGCGACGGAAAGC
TAGCTCGCTTTCCCACTTGTCGACACGCACCGCTCGCTCGCTCCGCCAGC
TGTCGTGGCGATGATTCTCGTGAACGCGAGGCTTTGAGGGGTGGTTCATG
TAAACATGTTTTGCAGCCCTCATACTAATGCTGCGTGCCCGTGCTCCTGA
GAGCGTGTGCGGTCTAGAAACTGTTTTACTCTTCCGCCGAAGCGCCGGGT
AAAACTATGAACAAAACAAAACAAAAGGCGAAGGAGGCTCTGTGCTTCTA
AACCGATAAGATACCCGAGTAAAATACACGATGTGAATACAAGTGTGTAT
ACTCTTGGTTGACTTGGATGATGATGGCATGAGGAGTTAAATATCATTTg
ggggggGGGGGGGGAGGCTGGAAACCCTCACCCCCCAAAAGTACGAGTTT
AGACTCGAAACCCGCGTTGGGCTCTTTGTAAATGTTTTCTGAACAAAACG
CGGTAGTTAGCCAGGGCTTGGTGCTAGCGGACCATTGAAAGCTCTCTCTC
TTATTTTATGGTGGCGTCTCTTACGATAATAAAAAAGCCTTATTTCATCG
AGTGACCGTTGGAATGAAAATCACCGGAAATGTTGCCGATGAGCCGTGTA
CTGTTCGAAGATAGCGCAATCAATTCCGAACTCGGACCGCCTCTGAAAGA
GGATGAGAGAGACCCGTCAGATTGGCCACAGGGTGCCGAGCGCCGTTTGA
GACAGCCTCCGAGTCACAAATGACACAGGCGGCGAAAGTGCCGATGCGTT
TTCAAACTCGCGGTTTTCGTATGGTATCACAGTTCGGTGCGAAGACGGGT
ATTTTTCGTCACCCTCCCCCCCCCCCCTCCCCCTTTTTTTTCATTGATTC
AACACTTTACAATTGCGAATTACTTACTGTAGGAGGTATTTTTATCGGTG
GTACAAGAGCTGTGCCACGGTGGCACAGCAGCCGGGTTCGCGGAATATTT
TTGTTGCACCCGGCCGGAAAACGTTAGACGTCGATGATTGGATCCTCTCG
AGCCACCGTTCCAGCGGTTGAGCGATAAGGACAGCTCCTATTACAGGAAC
AGGATACCAAACGTTTGACGACTGCTTCTAAGGTTTGACGATGAACGATG
CGACCCGATGATTTTTCCTTCTGCGGAAGCATCGAAAGCTCTGTTCAAAA
TCCGGTGCCTCCCTGAATGGGTCCGTCCGAGTGGTAACCTGAAACTAGGG
ACTGCACCAATAAAAAAAGGCAATAAGTCGCTGCCGTTTCGAACTTGCCC
TGAAACTCGGAAAAATACGATGGAAATCCCGTCCATCGAGCGCCCCATAT
TTAAATGCATCGTCTCCCGAACCGCGGTCTGGTTGCTGACTTTCTCTCTC
TCTCGCCCTTGTTTTGTGTGTTTGTCGGCCAACACTCTTTTCTCGCCGTT
TGGTGTTCCCAGCCATGTAAACGCGTTACTGCAGAGGGGAAGGGTCATGG
CGTTTCAAGGTTTGGTCGAAGCCCTGCAACCTACGGAGCCTCATGGGCAG
CTTTCGGACACAAGAGGAGTACCTGAACCCTTGGCGCTCGGGATTTCGAG
GGAGGCGTTGTCCGAGGGAATTTTTCCCGGGATACCTCTCCACTACCATT
GCCGATTTTCGGTTACTCTCTTGGGTTTGGTTTATCGTTCGTAGGGTGGC
TGTGTAATGCTTTCGCCATACCTGTGCAGGGGTGTCGAGGGTAAGTGTGC
TGGCAGGGCGACGGTTAGGATGCTTTGATTACCGTGGAATGTTAGGACAC
GACTTGGACTTGGGCGTTGGTTTGACTCGTTAGGGTACTGCTTGTTGTTC
TTTTGCAGTCCCGACAAAATTAACAGAGCGCTTCGTCTGTGGCTTGAGAC
GTGCGCGCCTGTGTCTATCCTGCGCCGCGCCAACCTGATGCTGTCATTTT
TTTTTTTATTTTTCCCTTTTTTTGTTTCCCTATCGCACGTATTGTTGGAA
AAGATTGGGAACATGAGTTAGACATCCCTGAGAGGGGGGAGAGGGTTGTA
GAGGGGTTTGGAGTCGAGCTGAGCAGTAGGACTAAGTATGCCTTCGTATT
TTCTGGTCGATGGCATGATCCGGCTCCCTTCGCTCGGGAAAAGATGTTTG
GTGCTAAATACTGCAGCAAAAACCCGTTTTACGCTTTACGGTGGTACTAG
CACTAGTAATAGTATTTAGACGTTTTGCTCAGTAAGAGGCTGATTCCTGT
TCTGATCTTGCTGCGTCAGACGGCAAGGGGCGGCGCAGATTCTAAGACAA
GAAGTAGACAAAACAAATGTTCTTGGCTGGCCGTGGTCTTCGTCTCAAAT
GGCGGCCCTCCGGCGTCGTGCTCCTTTTCATCCAATGAGCCCAAACCCAA
TAACAAAATCAATGTCTTACGGGAACACGGTCTCGTTGTCTAGTATACTA
TTGGTGACAAAAGCTATCCTATCCAGGCATCGCGCCACCCCTCTTAGACC
CATCAAAGGGTTGGAATGGACAGAGATGATGGTGGCGTGTGGGGGGCCAA
AGGATACTGTGTTGCTGGCCCAACACGATGATGATGTCTATCGGAGACAC
GCCTCCTTATCGAAAGACAAGTAGTACTGCTGTACCGTATCCGCGCCTAG
AGTTATCCTATCCAGGTACTGTGCGTCATCCCCTCCCGGACCTTTCGGTG
GTTGGAATGAACGGAGATGATGGCGTGTGGGATCAAAAGACGTGTGTGGT
TGAATTATTTCGGTGATTGTCGGTGCCGAAAACATCTTCGATATCTCCCA
CGTCAAAATCACAGCGCGGTTTTTCGAAAAGCTCAAAACCTCTCGAGTTT
GTCTAAAAAGCCTCTTCGTGAGACATCTGTATTTTTGTACAACCTGTACG
CTTTTTTTCACCGAGGGTATTTTTTGCGTGTTTTCAGCAATCTCAGCAGA
GCATGCATGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig72:862236..868447+

>mRNA_F-serratus_M_contig72.18426.1 ID=mRNA_F-serratus_M_contig72.18426.1|Name=mRNA_F-serratus_M_contig72.18426.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig72:862236..868447+ (Fucus serratus male)
ATGAAGTCCTTCTCTGCCGCAGCTGCGTATCTGTGCGCCCTATCCCCGGC
TGCAGCCTTCGTCCCGTCCGCGCCTTCGCTTGCCAGCGTTCGCAGCGCAC
CCTCCACGACCAGGATGGTCGCCACCCCCGATCGTTCCATCGCCATCCCG
ATCGATCCCTACCCGGAGGGCCTTGACGGTGAAATGCCAGGAGACGTGGG
TTTCGACCCCGCAGGGTTCGCGAACAACCCGCCAAAGTGGGTGCAGGGGG
AGGGAAGCGGCACCGCGGCTCGCGTCAAGTGGTACAGGGAAGCAGAGCTA
GCTCACGGCCGGGTAGCGATGCTCGCGGCCGCGGGGTGGATTTTCCCCGA
GATCTACCACTTCCCGGGAAACAACGTGCTCGGACAAGACAGGTTCGCTG
AGATGAACCCGCTCCTTGCCTACGGAAAAATCCCGGGTGCAGGTGGCATC
CAGATCGTGGTCACCCTCCTCATCCTTGAGCTCATCCGGCTGAACAGGAG
TGTGCGTGGCGACGGTCCCCCGGGGGACATCGGGCTTGGCCAGGGCGAGG
GACGCTGGAACCCCTTCGGTTTCAACTACACCGAGGAGGAGTACAAAGTG
AAACAGCTGCAGATGAAGTCCTTCTCTGCCGCAGCTGCGTATCTGTGCGC
CCTATCCCCGGCTGCAGCCTTCGTCCCGTCCGCGCCTTCGCTTGCCAGCG
TTCGCAGCGCACCCTCCACGACCAGGATGGTCGCCACCCCCGATCGTTCC
ATCGCCATCCCGATCGATCCCTACCCGGAGGGCCTTGACGGTGAAATGCC
AGGAGACGTGGGTTTCGACCCCGCAGGGTTCGCGAACAACCCGCCAAAGT
GGGTGCAGGGGGAGGGAAGCGGCACCGCGGCTCGCGTCAAGTGGTACAGG
GAAGCAGAGCTAGCTCACGGCCGGGTAGCGATGCTCGCGGCCGCGGGGTG
GATTTTCCCCGAGATCTACCACTTCCCGGGAAACAACGTGCTCGGACAAG
ACAGGTTCGCTGAGATGAACCCGCTCCTTGCCTACGGAAAAATCCCGGGT
GCAGGTGGCATCCAGATCGTGGTCACCCTCCTCATCCTTGAGCTCATCCG
GCTGAACAGGAGTGTGCGTGGCGACGGTCCCCCGGGGGACATCGGGCTTG
GCCAGGGCGAGGGACGCTGGAACCCCTTCGGTTTCAACTACACCGAGGAG
GAGTACAAAGTGAAACAGCTGCAGGAGTTGAAGAACGGCCGCGCTGCCAT
GATCGGAATCGCGGGCATGTACGCTCAGACCGTCGTCCAGGGCAAGCCGA
TTCTCGCGCAGCTCAGCGAGGCCTTTTCCGTCCCGGGCGACGTGGCGAAG
GCCGGGTACTTCTTCCCCACTGATCAGCGAGTTGAAGAACGGCCGCGCTG
CCATGATCGGAATCGCGGGCATGTACGCTCAGACCGTCGTCCAGGGCAAG
CCGATTCTCGCGCAGCTCAGCGAGGCCTTTTCCGTCCCGGGCGACGTGGC
GAAGGCCGGGTACTTCTTCCCCACTGATCAGCCCATGTAACCATGTAA
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