mRNA_F-serratus_M_contig72.18413.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig72.18413.1
Unique NamemRNA_F-serratus_M_contig72.18413.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig72contigF-serratus_M_contig72:563643..565660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1312
Cds size726
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig72.18413.1prot_F-serratus_M_contig72.18413.1Fucus serratus malepolypeptideF-serratus_M_contig72 564227..565660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.1410294-UTR-F-serratus_M_contig72:563642..5642261622932199.1410294-UTR-F-serratus_M_contig72:563642..564226Fucus serratus maleUTRF-serratus_M_contig72 563643..564226 +
1690964195.0560083-UTR-F-serratus_M_contig72:563642..5642261690964195.0560083-UTR-F-serratus_M_contig72:563642..564226Fucus serratus maleUTRF-serratus_M_contig72 563643..564226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.1624858-CDS-F-serratus_M_contig72:564226..5644821622932199.1624858-CDS-F-serratus_M_contig72:564226..564482Fucus serratus maleCDSF-serratus_M_contig72 564227..564482 +
1690964195.0746233-CDS-F-serratus_M_contig72:564226..5644821690964195.0746233-CDS-F-serratus_M_contig72:564226..564482Fucus serratus maleCDSF-serratus_M_contig72 564227..564482 +
1622932199.2089415-CDS-F-serratus_M_contig72:565190..5656601622932199.2089415-CDS-F-serratus_M_contig72:565190..565660Fucus serratus maleCDSF-serratus_M_contig72 565191..565660 +
1690964195.0859497-CDS-F-serratus_M_contig72:565190..5656601690964195.0859497-CDS-F-serratus_M_contig72:565190..565660Fucus serratus maleCDSF-serratus_M_contig72 565191..565660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig72.18413.1

>prot_F-serratus_M_contig72.18413.1 ID=prot_F-serratus_M_contig72.18413.1|Name=mRNA_F-serratus_M_contig72.18413.1|organism=Fucus serratus male|type=polypeptide|length=242bp
MPRAGRRWWLAAGALSSLAAALAGRRDFHHVSADPKTARESRSHKGKTEA
SVRTTPTWESSPAGSRTIFFFVAGPGKTPMLVEAADRASGRSWRESVRTT
VSAMSARFSTAPGDAGVFSRGKMSASTEAILRMRTIDRFHRQQQQQQQRQ
LPLLARATEAANAEQAGMALTWSASRTSFSTRADSDARTSAIGGTAPLPY
HLVDGGVKRRGGVRETVKKVTGLSSQPRREVEQSLEEAGTDG
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mRNA from alignment at F-serratus_M_contig72:563643..565660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig72.18413.1 ID=mRNA_F-serratus_M_contig72.18413.1|Name=mRNA_F-serratus_M_contig72.18413.1|organism=Fucus serratus male|type=mRNA|length=2018bp|location=Sequence derived from alignment at F-serratus_M_contig72:563643..565660+ (Fucus serratus male)
TCTTCGAGAAACAAGTGACAGTCTCGTGACTAGCTGCTAGCTTGGTTACG
CTTGTACGGAAGATTTTGCAGGATTACGTGGTAGATCACCAGGCGGCGTG
TGGGACCAAGCAAATCATCCACTTGGACCTCACCGGTCAGCTCGTGTTCT
GTCGTCTGCGCCAACTCACCCACTTTCTGTAGTTGCTTTGTGCAGCAGGT
TGGGTTGTCTCTGTTCTAAATGCTGTACTCGTGAAGGAGGCAACTCTGAC
TGCAGTTTCTACACGAGTATCAAAAACGTCTGAAGAGGCGCACACAGCAA
AATAAGAGATCATCGATCATGTCCTGAACGTCATGCAGCTAGCAAAACGG
TCTGCATCTACGAGCCTTTGCCCAGATCCCTTTATCGGTCGTCCAGCATC
TTGCGGCAAGGTAATCTCGCAACAAACGACGAAGTTCGTGCAAGAATATC
TGTTTCCGCAGACTAGCACGACGTACGGTAGTAGACGCGACTTCGGTCCC
GAACGCTCCTGGAGGGCAAGAAAAACTTGATAAACGGCAACATCAAGAAA
GGCACGAGCAAACCAGCTCACGTGTGTAGCCCGAATGCCCCGGGCAGGGC
GGCGTTGGTGGCTAGCTGCCGGAGCTCTTTCGTCTCTGGCGGCAGCGCTT
GCCGGGCGACGAGATTTTCATCATGTATCGGCGGACCCCAAGACCGCCAG
GGAGAGTCGCTCCCATAAAGGCAAGACAGAGGCTAGTGTTCGGACCACCC
CTACGTGGGAATCATCCCCGGCCGGAAGCCGCACGATCTTTTTCTTCGTT
GCCGGGCCGGGTAAAACGCCGATGTTGGTTGAAGCTGCGGGTAAGGGTTC
CAAAAACTAAATACTACTGCTGTATGTTTTATAATATTTTTCTATAATAA
GTTGATATTCAAAGAAAATCTGAACGCATCGGCGTGTAGATGATGCGGCG
ACATTATTATTAGTCGCCTTTCGCGCACCCGAAACTTACGCTGTGCCCGG
CCGGCGACGACAACTGGAAGTAGTGTATACCGTACATCCTCTATAGAGCT
ACGCATGCACTTTGTAGTAAAAACATCGCACCACAACTAGACGAAAACGG
TGGACAGACAGCGCAGCACTGTGCACCAGACGGGCGGGTTCGAAACCAAG
TTGGTTTACCTTTCTTCTGAGACAGTAAACACATGACAAAATCTACGCAG
GACGAAATCGTGATGTAACAGTTTGTCTTGAGGCAATGCCACTGCAGCTC
ACACTCCTTCCTTCGAGTGGCTGGATGCTCTCAATAGAATATTCCAGGAC
GCCGTCAGGTTGTTCGTAGTGCTTTTTGGTTTTCTGTAAGCTTTTTCGTA
GCCGGTCGATGCCCTCCACGACCGTTTCGATCGACGATGACTGCGAGTGG
ATGAATGGATCGGCCCGATAACATCACGCCGGAGTATCCAACGAGCGGTG
TACTGTCTGTGCCGCCTACAGAGTGCGTACTGGTATGTATCTCGCCTGCG
TCCGTTACTTTAGATCCGCCTCGACCACCGCGTACCCCGCCAAGGAAGAC
AGGGCAAGCGGGAGGTCCTGGAGAGAGTCCGTTAGGACGACCGTGAGCGC
CATGAGCGCACGGTTTTCCACAGCACCCGGAGACGCAGGCGTTTTTTCTC
GCGGGAAGATGAGCGCTTCTACTGAAGCGATCCTAAGAATGAGAACAATA
GACCGCTTCCATCGGCAACAGCAGCAGCAGCAGCAACGGCAGCTGCCCCT
ATTGGCTCGTGCAACGGAAGCGGCAAACGCGGAACAAGCGGGTATGGCGT
TGACGTGGTCTGCGTCGCGAACCTCGTTTAGCACGCGTGCTGATAGTGAT
GCAAGGACGTCTGCTATTGGTGGCACGGCGCCGCTGCCCTATCATCTCGT
GGACGGGGGCGTGAAACGGCGTGGAGGCGTTCGCGAGACGGTGAAGAAGG
TGACGGGGTTGTCGAGTCAGCCTCGACGGGAAGTAGAACAATCGCTTGAG
GAGGCAGGAACGGATGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig72:563643..565660+

>mRNA_F-serratus_M_contig72.18413.1 ID=mRNA_F-serratus_M_contig72.18413.1|Name=mRNA_F-serratus_M_contig72.18413.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig72:563643..565660+ (Fucus serratus male)
ATGCCCCGGGCAGGGCGGCGTTGGTGGCTAGCTGCCGGAGCTCTTTCGTC
TCTGGCGGCAGCGCTTGCCGGGCGACGAGATTTTCATCATGTATCGGCGG
ACCCCAAGACCGCCAGGGAGAGTCGCTCCCATAAAGGCAAGACAGAGGCT
AGTGTTCGGACCACCCCTACGTGGGAATCATCCCCGGCCGGAAGCCGCAC
GATCTTTTTCTTCGTTGCCGGGCCGGGTAAAACGCCGATGTTGGTTGAAG
CTGCGGATGCCCCGGGCAGGGCGGCGTTGGTGGCTAGCTGCCGGAGCTCT
TTCGTCTCTGGCGGCAGCGCTTGCCGGGCGACGAGATTTTCATCATGTAT
CGGCGGACCCCAAGACCGCCAGGGAGAGTCGCTCCCATAAAGGCAAGACA
GAGGCTAGTGTTCGGACCACCCCTACGTGGGAATCATCCCCGGCCGGAAG
CCGCACGATCTTTTTCTTCGTTGCCGGGCCGGGTAAAACGCCGATGTTGG
TTGAAGCTGCGGACAGGGCAAGCGGGAGGTCCTGGAGAGAGTCCGTTAGG
ACGACCGTGAGCGCCATGAGCGCACGGTTTTCCACAGCACCCGGAGACGC
AGGCGTTTTTTCTCGCGGGAAGATGAGCGCTTCTACTGAAGCGATCCTAA
GAATGAGAACAATAGACCGCTTCCATCGGCAACAGCAGCAGCAGCAGCAA
CGGCAGCTGCCCCTATTGGCTCGTGCAACGGAAGCGGCAAACGCGGAACA
AGCGGGTATGGCGTTGACGTGGTCTGCGTCGCGAACCTCGTTTAGCACGC
GTGCTGATAGTGATGCAAGGACGTCTGCTATTGGTGGCACGGCGCCGCTG
CCCTATCATCTCGTGGACGGGGGCGTGAAACGGCGTGGAGGCGTTCGCGA
GACGGTGAAGAAGGTGACGGGGTTGTCGAGTCAGCCTCGACGGGAAGTAG
AACAATCGCTTGAGGAGGCAGGAACGGATGGAACAGGGCAAGCGGGAGGT
CCTGGAGAGAGTCCGTTAGGACGACCGTGAGCGCCATGAGCGCACGGTTT
TCCACAGCACCCGGAGACGCAGGCGTTTTTTCTCGCGGGAAGATGAGCGC
TTCTACTGAAGCGATCCTAAGAATGAGAACAATAGACCGCTTCCATCGGC
AACAGCAGCAGCAGCAGCAACGGCAGCTGCCCCTATTGGCTCGTGCAACG
GAAGCGGCAAACGCGGAACAAGCGGGTATGGCGTTGACGTGGTCTGCGTC
GCGAACCTCGTTTAGCACGCGTGCTGATAGTGATGCAAGGACGTCTGCTA
TTGGTGGCACGGCGCCGCTGCCCTATCATCTCGTGGACGGGGGCGTGAAA
CGGCGTGGAGGCGTTCGCGAGACGGTGAAGAAGGTGACGGGGTTGTCGAG
TCAGCCTCGACGGGAAGTAGAACAATCGCTTGAGGAGGCAGGAACGGATG
GA
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