mRNA_F-serratus_M_contig719.18386.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18386.1
Unique NamemRNA_F-serratus_M_contig719.18386.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:78506..80437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size314
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18386.1prot_F-serratus_M_contig719.18386.1Fucus serratus malepolypeptideF-serratus_M_contig719 78506..80437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.5972-CDS-F-serratus_M_contig719:78505..785691622932196.5972-CDS-F-serratus_M_contig719:78505..78569Fucus serratus maleCDSF-serratus_M_contig719 78506..78569 +
1690964194.0093217-CDS-F-serratus_M_contig719:78505..785691690964194.0093217-CDS-F-serratus_M_contig719:78505..78569Fucus serratus maleCDSF-serratus_M_contig719 78506..78569 +
1622932196.6167548-CDS-F-serratus_M_contig719:79117..791981622932196.6167548-CDS-F-serratus_M_contig719:79117..79198Fucus serratus maleCDSF-serratus_M_contig719 79118..79198 +
1690964194.0191398-CDS-F-serratus_M_contig719:79117..791981690964194.0191398-CDS-F-serratus_M_contig719:79117..79198Fucus serratus maleCDSF-serratus_M_contig719 79118..79198 +
1622932196.6349006-CDS-F-serratus_M_contig719:79883..799671622932196.6349006-CDS-F-serratus_M_contig719:79883..79967Fucus serratus maleCDSF-serratus_M_contig719 79884..79967 +
1690964194.0282428-CDS-F-serratus_M_contig719:79883..799671690964194.0282428-CDS-F-serratus_M_contig719:79883..79967Fucus serratus maleCDSF-serratus_M_contig719 79884..79967 +
1622932196.652826-CDS-F-serratus_M_contig719:80354..804371622932196.652826-CDS-F-serratus_M_contig719:80354..80437Fucus serratus maleCDSF-serratus_M_contig719 80355..80437 +
1690964194.038033-CDS-F-serratus_M_contig719:80354..804371690964194.038033-CDS-F-serratus_M_contig719:80354..80437Fucus serratus maleCDSF-serratus_M_contig719 80355..80437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18386.1

>prot_F-serratus_M_contig719.18386.1 ID=prot_F-serratus_M_contig719.18386.1|Name=mRNA_F-serratus_M_contig719.18386.1|organism=Fucus serratus male|type=polypeptide|length=104bp
DSVVQINGRTSFLLNSAGDLGGAISAGNRVIVSTVGPTRFSRNSASSGGA
LCSSQVAIVSFQGKTLFDNNTASNDGGALHFMFSRVSIGGSSEFIFNDAV
DGSG
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mRNA from alignment at F-serratus_M_contig719:78506..80437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18386.1 ID=mRNA_F-serratus_M_contig719.18386.1|Name=mRNA_F-serratus_M_contig719.18386.1|organism=Fucus serratus male|type=mRNA|length=1932bp|location=Sequence derived from alignment at F-serratus_M_contig719:78506..80437+ (Fucus serratus male)
GACAGCGTGGTCCAGATCAATGGGCGGACGTCGTTTCTTCTAAACTCGGC
GGGGGATCTCGGAGGTAAGGGTTTGTAACTCCGCGGCCGACCCAAGATTC
TTGGTGGTACGACGTAGTACTATTGGCAGGTCTTGCGGTGGGCCATTCCC
TTACGGTGACTTGAACTCCGGGAAACTAGAGGCGTTGGCGGCGAGAGGGG
GAAGGGGAGGTGGGGGGGGGGTATCTGAGTGTGCTGTCGACTGCCATCGA
AACACCCGGGGGTAATAGACACTTGTACCTCGTTGTGCCGCCAACATTAT
TAGCGATTTTGACGTATCATGGGTCAAGCATGCGACGGCACGCGTTTTAA
TGTATCGTCCGGTAAAAGAGGACGCCGAGGTGCAGCTTCGACGATATTGG
CGACAACGAACGAGTGATGGCAACTCAAACCAAAACAGTCCAATCCTTCG
CTGTTTTCGGTGGTTACAAGTTTATGCCGCCGGAGCTGATAACGTCTGTT
TCGTCCGAGAGACAAAAGCCACGGGTTTCCCATGCGCGATTCTTAATGTT
ATTTCTCGCACGATGCTGCCCCTCTCTCCCCCTCTCTGACTGTGGGTGTT
GAATTTTTTCAGGGGCCATCAGCGCAGGCAACCGTGTTATTGTGTCCACC
GTCGGACCTACGAGGTTTTCTCGGAACTCCGCATCGTCCGGAGGTATACG
CATTAACGCAGTACATGGTGGTTGTGTGTGTGCTTCGGTATATTTACTAA
TTATTGTACGTAACGGCGCAATTCGGCGCTGCCCTACTCACTCTATGATG
CTCGTGTTGGTCCTTCCAAGGGAGAATCAATTTTACCCGGAGTACTTGTC
ACTAAAGCCTTTGATCAGAAAAGATAAAGAGGATGCACTCTCTACCGTTT
TTATTTAAGCCCTGAGTACCTTGCGTTTCTCTTTCTGCTTCCTTGCAGTT
CGCTAAATGGTCCCGGCCGACATCTAGGGGTGGAAGGGGGGGGGAGGGGG
GGGTGTCTGTGTCTGCGCACGTATTTCATTTTTTTCGTACTAGGCTCGTG
CGCACTTCGAGCAGTGCTCTGGGCGATTGCATCCCCGCTGCACCGTCAGC
GCCTTTTTCTTTTTCTCTCTATCTTTCCTTCTCCTTCCCCTTCCCCCTAC
TTTGCGCGGCGAGTAATACACCCGCCGCTGCGAGACACTGACTCCACGCG
TCTCCTGCGGCTCAGCTAGACCTTTGCCTTTTAAGCCGTCGATCACCCTT
TCGCCATTCGCCAGCAGAAAAGGTCTTCGTCACGGCGCGAGCAACTCTTG
TCCCGCTCACCCCTCTCGCCACGAGACTGCCGATAGGTGGTATCGACTAA
TCTCGCCTCCCCTCCTCGTTCTCCTCAGGTGCCCTTTGTTCCTCCCAAGT
AGCCATCGTGTCGTTCCAAGGCAAAACCCTTTTCGACAACAACACAGCAT
CGAACGACGGAGGTAAGGGATCATTATTTTCTAGGGAGAGGGTGCGGGTG
TCTAAACGTGTCGGTGTGTTGTACAAGTACCAGACGCTGGCCGAACCTCG
TCCCAGTCGATATTTGCTTGTTTTTGCTTCAACCGTCGATGTGGCTGGCA
AAACGTTTGGGTGGCGCTACAATAAACAAAAACGTTTAACCCGCGAAAGA
AAGCTCTAGATACCCGGCCACTCGCTCTCATGCCAGTGCCACCTCAAAAT
GAAAAAAACTATCTTCTTTCTTTTCCCGCCTCACTCCAGGTTCCCAAACG
CTAACTACTCCCTACTCTACCCTGCCCCCCCCCCCCCATTATACCATCCC
GACCCCCCCTTTCCTCCGGGCTTCGATATTGTGTCGTTCACGCGTGCAGG
CGCCCTCCACTTCATGTTCTCCCGGGTGTCGATCGGAGGGTCGTCGGAGT
TCATCTTTAACGATGCGGTGGACGGATCAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:78506..80437+

>mRNA_F-serratus_M_contig719.18386.1 ID=mRNA_F-serratus_M_contig719.18386.1|Name=mRNA_F-serratus_M_contig719.18386.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig719:78506..80437+ (Fucus serratus male)
GACAGCGTGGTCCAGATCAATGGGCGGACGTCGTTTCTTCTAAACTCGGC
GGGGGATCTCGGAGGACAGCGTGGTCCAGATCAATGGGCGGACGTCGTTT
CTTCTAAACTCGGCGGGGGATCTCGGAGGGGCCATCAGCGCAGGCAACCG
TGTTATTGTGTCCACCGTCGGACCTACGAGGTTTTCTCGGAACTCCGCAT
CGTCCGGAGGGGCCATCAGCGCAGGCAACCGTGTTATTGTGTCCACCGTC
GGACCTACGAGGTTTTCTCGGAACTCCGCATCGTCCGGAGGTGCCCTTTG
TTCCTCCCAAGTAGCCATCGTGTCGTTCCAAGGCAAAACCCTTTTCGACA
ACAACACAGCATCGAACGACGGAGGTGCCCTTTGTTCCTCCCAAGTAGCC
ATCGTGTCGTTCCAAGGCAAAACCCTTTTCGACAACAACACAGCATCGAA
CGACGGAGGCGCCCTCCACTTCATGTTCTCCCGGGTGTCGATCGGAGGGT
CGTCGGAGTTCATCTTTAACGATGCGGTGGACGGATCAGGGGCGCCCTCC
ACTTCATGTTCTCCCGGGTGTCGATCGGAGGGTCGTCGGAGTTCATCTTT
AACGATGCGGTGGACGGATCAGGG
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